Group: Mycology - with tag assembly [12 articles] Export

Recent papers posted by members of the Mycology group with tag assembly

	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to shortread methods bioinformatics assembly by stajich to the group Mycology on 2009-10-02 16:01:50 as along with 10 people djkt n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson druvus neils
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to nextgensequencing assembly by stajich to the group Mycology on 2009-08-30 21:11:52 as along with 17 people and 1 group operon fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian APRegier thegoose danmaclean natstreet neils druvus GustavoLacerda avilella Journal picks
	Whole genome assembly from 454 sequencing output via modified DNA graph concept [My Copy] Computational Biology and Chemistry, Vol. 33, No. 3. (04 June 2009), pp. 224-230. by Jacek Blazewicz, Marcin Bryja, Marek Figlerowicz, et al.Piotr Gawron, Marta Kasprzak, Edward Kirton, Darren Platt, Jakub Przybytek, Aleksandra Swiercz, Lukasz Szajkowski posted to assembly bioinformatics computational_biology dna genomics methods by stajich to the group Mycology on 2009-08-04 00:00:31 as along with 5 people n00c GustavoLacerda orzenil natstreet druvus
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly bioinformatics computational_biology nextgensequencing parallel by stajich to the group Mycology on 2009-03-06 16:08:59 as along with 23 people and 1 group ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan jbhiatt erikarner BergmanLab
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by D. W. Bryant, W. K. Wong, T. C. Mockler posted to assembly bioinformatics methods nextgensequencing shortread by stajich to the group Mycology on 2009-02-28 19:32:31 as along with 9 people and 1 group GustavoLacerda GeeSharpMinor jfr n00c dakelley pengchy natstreet idoerg druvus Bioinformatics
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to assembly genome sequencing shortread solexa by stajich to the group Mycology on 2008-12-08 19:48:45 as along with 17 people n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to assembly bacteria genome shortread solexa by stajich to the group Mycology on 2008-09-26 16:01:15 as along with 16 people and 4 groups n00c operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:52:07 as along with 22 people n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:51:49 as along with 16 people and 1 group operon n00c robsyme dakelley acn druvus nmohelli natstreet timflutre ghattem azazello GustavoLacerda niallhaslam flexer jwhitney iris42 DeNovoAssembly-SIMR
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:51:32 as along with 15 people and 3 groups n00c GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley azazello Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen gatech-compgenomics
	Velvet: algorithms for de novo short read assembly using de Bruijn graphs. [My Copy] Genome research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:51:06 as along with 36 people and 2 groups azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR
	Hawkeye: an interactive visual analytics tool for genome assemblies [My Copy] Genome Biology, Vol. 8, No. 3. (09 March 2007), R34. by Michael Schatz, Adam Phillippy, Ben Shneiderman, Steven Salzberg posted to assembly bioinformatics comparison genome by stajich to the group Mycology on 2008-03-23 21:27:35 as along with 11 people and 1 group darian n00c joule Thaverkamp hpaces orzenil GustavoLacerda natstreet druvus azazello Neeperando gatech-compgenomics

Note: You may cite this page as: http://www.citeulike.org/group/3565/tag/assembly

sequencing	82
genome	75
software	61
454	55
bioinformatics	55
review	42
genomics	38
thesis	38
short-reads	37
solexa	37
next_generation	35
structure	35
algorithm	34
phage	31
hiv	28
capsid	27
virus	27
short-read	26
theory	25
ngs	24
read	22
alignment	19
evolution	19
illumina	19
short	19
community	17
dna	17
self	17
bacteria	16
optical	16
method	15
est	14
focus	14
metagenomics	14
methods	14
complex	13
ht_sequencing	13
protein	13
shortread	13
apobec	12
sequence	12
wgs	11
2008	10
kinetics	10
nanoparticles	10
rna	10
srs	10
tweezers	10
ais	9
fragment	9
mapping	9
targeting	9
experiment	8
nextgen	8
pressure	8
radiation	8
resequencing	8
tool	8
transcriptome	8
ankg	7
annotation	7
assembler	7
de-bruijn	7
de-novo	7
dynamics	7
gag	7
haplotype	7
polymer	7
secretion	7
short-read-assembly	7
subassemblypaper	7
validation	7
vif	7
399	6
bacterial	6
molecular	6
nextgensequencing	6
pf454-paper	6
pilus	6
post-assembly	6
replication	6
trait	6
velvet	6
visualisation	6
celera	5
comparative	5
de	5
ecology	5
gold	5
hcv	5
hts	5
novo	5
parallel	5
recombination	5
ribosome	5
rna-seq	5
savignyi	5
scaffolding	5
surface	5
virulence	5

Group: Mycology - with tag assembly [12 articles] Export

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