Group: Mycology - with tag evolution [67 articles] Export

Recent papers posted by members of the Mycology group with tag evolution

	Mononucleotide repeats are asymmetrically distributed in fungal genes. [My Copy] BMC genomics, Vol. 9 (11 December 2008), 596. by Mark W. van Passel, Leo H. de Graaff posted to repeats fungi evolution by stajich to the group Mycology on 2009-11-04 17:05:00 as
	Self-Recognition and Ca2+-Dependent Carbohydrate-Carbohydrate Cell Adhesion Provide Clues to the Cambrian Explosion [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2551-2561. by Xavier Fernandez-Busquets, Andre Kornig, Iwona Bucior, Max M. Burger, Dario Anselmetti posted to multicellular_animals multicellular evolution calcium_levels by stajich to the group Mycology on 2009-11-03 23:46:06 as
	An epistatic ratchet constrains the direction of glucocorticoid receptor evolution [My Copy] Nature, Vol. 461, No. 7263. (24 September 2009), pp. 515-519. by Jamie T. Bridgham, Eric A. Ortlund, Joseph W. Thornton posted to parsimony evolution dollo by stajich to the group Mycology on 2009-09-26 22:05:42 as along with 9 people venancio merpublic docv bpcusack cmzmasek jjray zwang Annab stevanspringer
	General Rules for Optimal Codon Choice [My Copy] PLoS Genet, Vol. 5, No. 7. (10 July 2009), e1000556. by Ruth Hershberg, Dmitri A. Petrov posted to codon_bias design evolution by stajich to the group Mycology on 2009-07-10 18:58:38 as along with 4 people codonusage GustavoLacerda kiekyon djkt
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to evolution phylogenetics tree by stajich to the group Mycology on 2009-07-03 21:51:46 as along with 26 people and 3 groups gjuggler parnell kinestetika robertrentzsch xianjun gdb jbhiatt operon biomcgary kieran101 zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre inquil TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Journal picks iSEEM
	Non Mycobacterial Virulence Genes in the Genome of the Emerging Pathogen <italic>Mycobacterium abscessus</italic> [My Copy] PLoS ONE, Vol. 4, No. 6. (19 June 2009), e5660. by Fabienne Ripoll, Sophie Pasek, Chantal Schenowitz, et al.Carole Dossat, Valérie Barbe, Martin Rottman, Edouard Macheras, Beate Heym, Jean-Louis Herrmann, Mamadou Daffé, Roland Brosch, Jean-Loup Risler, Jean-Louis Gaillard posted to bacteria evolution pathogen by stajich to the group Mycology on 2009-06-30 05:23:05 as
	microRNAs as prime players in a combinatorial view of evolution. [My Copy] RNA biology, Vol. 5, No. 3. (8 July 2008) by Davide Cacchiarelli, Daniele Santoni, Irene Bozzoni posted to development evodevo evolution mirna rna smallrna by stajich to the group Mycology on 2009-06-11 21:21:11 as along with 1 person erel10
	Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome [My Copy] PLoS Genet, Vol. 5, No. 5. (15 May 2009), e1000485. by Jonathan L. Gordon, Kevin P. Byrne, Kenneth H. Wolfe posted to evolution genome reconstruction yeast by stajich to the group Mycology on 2009-05-15 16:34:49 as along with 4 people bpcusack cabbagesofdoom leomrtns djkt
	Widespread Genomic Signatures of Natural Selection in Hominid Evolution [My Copy] PLoS Genet, Vol. 5, No. 5. (8 May 2009), e1000471. by Graham Mcvicker, David Gordon, Colleen Davis, Phil Green posted to evolution genome human population_genomics by stajich to the group Mycology on 2009-05-13 07:01:01 as along with 8 people bhengeveld jbhiatt gjuggler lp2 farhat ilyashl djkt sameersoi
	Evolution of the Caenorhabditis elegans genome. [My Copy] Molecular biology and evolution, Vol. 26, No. 6. (1 June 2009), pp. 1199-1234. by Asher D. Cutter, Alivia Dey, Rosalind L. Murray posted to caenorhabditis evolution by stajich to the group Mycology on 2009-05-13 01:17:56 as along with 5 people and 1 group rshe operon dpollard sujaikumar jasontsai RockmanLab
	Evolution in Candida albicans Populations During Single Passage Through a Mouse Host. [My Copy] Genetics (4 May 2009) by Anja Forche, Pete Magee, Anna Selmecki, Judith Berman, Georgiana May posted to candida evolution fungi pathogen by stajich to the group Mycology on 2009-05-10 22:00:04 as
	How confident can we be that orthologs are similar, but paralogs differ? [My Copy] Trends in Genetics, Vol. 25, No. 5. (13 May 2009), pp. 210-216. by Romain A. Studer, Marc Robinson-Rechavi posted to evolution gene_duplication orthology paralogs by stajich to the group Mycology on 2009-04-26 03:28:21 as along with 8 people idoerg dchughes natstreet druvus kshameer GustavoLacerda kiekyon gjuggler
	Evolution of protein modularity. [My Copy] Current opinion in structural biology (20 April 2009) by Edward N N. Trifonov, Zakharia M M. Frenkel posted to evolution module protein protein_evolution by stajich to the group Mycology on 2009-04-26 03:25:44 as along with 1 person zwang
	A maximum likelihood method for reconstruction of the evolution of eukaryotic gene structure. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 1-15. by L. Carmel, I. B. Rogozin, Y. I. Wolf, E. V. Koonin posted to eukaryota evolution intron_evolution by stajich to the group Mycology on 2009-04-26 03:24:01 as
	The origins of phagocytosis and eukaryogenesis [My Copy] Biology Direct, Vol. 4, No. 1. (26 February 2009), 9. by Natalya Yutin, Maxim Wolf, Yuri Wolf, Eugene Koonin posted to eukarytoa evolution phagocytosis by stajich to the group Mycology on 2009-04-26 03:23:42 as along with 3 people tomhebbron idoerg JoeDunckley
	Accelerated Adaptive Evolution on a Newly Formed X Chromosome [My Copy] PLoS Biology, Vol. 7, No. 4. (1 April 2009), e82. by Doris Bachtrog, Jeffrey D. Jensen, Zhi Zhang posted to drosophila evolution sex_chromosome by stajich to the group Mycology on 2009-04-15 17:41:55 as along with 3 people and 1 group polivares kieran101 djkt BergmanLab
	Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups" [My Copy] Proceedings of the National Academy of Sciences of the United States of America (23 February 2009) by Vladimir Hampl, Laura Hug, Jessica W W. Leigh, et al.Joel B B. Dacks, B Franz F. Lang, Alastair G B G. Simpson, Andrew J J. Roger posted to eukarytoa evolution excavata jakobid phylogenomics phylogeny by stajich to the group Mycology on 2009-02-28 22:20:21 as
	Ancient animal ancestry for nuclear myosin. [My Copy] Journal of cell science, Vol. 122, No. Pt 5. (1 March 2009), pp. 636-643. by W. A. Hofmann, T. A. Richards, P. de Lanerolle posted to animal_evolution eukarytoa evolution myosin opisthokont by stajich to the group Mycology on 2009-02-22 22:03:46 as
	Evolution of Reproductive Morphology in Leaf Endophytes [My Copy] PLoS ONE, Vol. 4, No. 1. (22 January 2009), e4246. by Zheng Wang, Peter R. Johnston, Zhu L. Yang, Jeffrey P. Townsend posted to development evolution fungi phylogeny by stajich to the group Mycology on 2009-02-19 22:35:19 as
	Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern “Urmetazoon” Hypothesis [My Copy] PLoS Biology, Vol. 7, No. 1. (1 January 2009), e20. by Bernd Schierwater, Michael Eitel, Wolfgang Jakob, et al.Hans-Jürgen Osigus, Heike Hadrys, Stephen L. Dellaporta, Sergios-Orestis Kolokotronis, Rob Desalle posted to evolution metazoa metazoan phylogenetics phylogeny by stajich to the group Mycology on 2009-01-28 22:34:20 as along with 4 people renatomilani biomcgary grahamc jmeppley
	Phylogeny of the SNARE vesicle fusion machinery yields insights into the conservation of the secretory pathway in fungi [My Copy] BMC Evolutionary Biology, Vol. 9 (23 January 2009), 19. by Nickias, Dirk Fasshauer posted to chytridgenomepaper evolution fungi secreted secretory by stajich to the group Mycology on 2009-01-27 19:32:28 as
	Where Do Introns Come From? [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e283. by Francesco Catania, Michael Lynch posted to evolution evolutionary_theory intron by stajich to the group Mycology on 2008-12-15 04:42:34 as along with 13 people and 2 groups azazello GustavoLacerda myzhang andreasapostolides alipi Zephyrus natstreet druvus dchughes clearbluespring djkt barry xianjun R.E.A.D McCammon
	Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence [My Copy] Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 143-153. by Cadhla Ramsden, Edward C. Holmes, Michael A. Charleston posted to co-evolution cospeciation evolution pathogen rodent virus by stajich to the group Mycology on 2008-12-15 04:38:12 as
	The Secretin GPCRs Descended from the Family of Adhesion GPCRs [My Copy] Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 71-84. by Karl J. Nordstrom, Malin C. Lagerstrom, Linn M. Waller, Robert Fredriksson, Helgi B. Schioth posted to cell_surface cell_wall evolution gpcr multicellular by stajich to the group Mycology on 2008-12-15 04:35:52 as
	EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates [My Copy] Genome Research, Vol. 19, No. 2. (24 February 2009), pp. 327-335. by Albert J. Vilella, Jessica Severin, Abel Ureta-Vidal, Li Heng, Richard Durbin, Ewan Birney posted to comparative_genomics duplication ensembl ensemblcompara evolution gene_tree phylogenetics tree vertebrate by stajich to the group Mycology on 2008-12-01 18:58:31 as along with 7 people and 1 group Keywan druvus operon alpae isimpson birney gjuggler Jarman Lab
	The Early Evolution of the Phosphagen Kinases—Insights from Choanoflagellate and Poriferan Arginine Kinases [My Copy] Journal of Molecular Evolution, Vol. 66, No. 1. (24 January 2008), pp. 11-20. by Maria Conejo, Matt Bertin, Shirley Pomponi, W. Ellington posted to evolution multicellular opisthokont by stajich to the group Mycology on 2008-12-01 06:43:53 as
	Titration of repeat-induced point mutation (RIP) by chromosome segment duplications in Neurospora crassa. [My Copy] Genetica, Vol. 134, No. 3. (November 2008), pp. 267-275. by P. K. Singh, D. P. Kasbekar posted to evolution genome rip by stajich to the group Mycology on 2008-11-23 21:21:05 as
	A Novel Gene Family Controls Species-Specific Morphological Traits in Hydra [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e278. by Konstantin Khalturin, Friederike Anton-Erxleben, Sylvia Sassmann, Jörg Wittlieb, Georg Hemmrich, Thomas C. Bosch posted to evolution gene gene_expression hydra lineage-specific molecular_evolution morphology species-specific subtractive_hybridization by stajich to the group Mycology on 2008-11-18 23:05:44 as along with 3 people biomcgary grahamc djkt
	Transitions in Sexuality: Recapitulation of an Ancestral Tri- and Tetrapolar Mating System in Cryptococcus neoformans [My Copy] Eukaryotic Cell, Vol. 7, No. 10. (1 October 2008), pp. 1847-1855. by Yen-Ping Hsueh, James A. Fraser, Joseph Heitman posted to basidiomycota cryptococcus evolution fungi mating_genes mating_systems mating_type by stajich to the group Mycology on 2008-11-17 00:10:59 as
	Molecular Population Genetics and Evolution of Drosophila Meiosis Genes [My Copy] Genetics (3 November 2008), genetics.108.093807. by Jennifer A. Anderson, William D. Gilliland, Charles H. Langley posted to drosophila evolution meiosis population_genetics positive_selection by stajich to the group Mycology on 2008-11-04 05:52:02 as along with 2 people and 1 group dpollard druvus RockmanLab
	Fusion and Fission of Genes Define a Metric between Fungal Genomes [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000200. by Pascal Durrens, Macha Nikolski, David Sherman posted to duplication evolution filamentous fungi gene genome_evolution neurospora yeast by stajich to the group Mycology on 2008-10-27 15:24:03 as along with 5 people and 1 group jameswasmuth skembel cthachuk taguchi djkt iSEEM
	Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution. [My Copy] Trends in genetics : TIG (9 September 2008) by Tanya Vavouri, Jennifer I I. Semple, Ben Lehner posted to duplication evolution gene_duplication genome_evolution by stajich to the group Mycology on 2008-10-01 22:20:17 as along with 1 person benjaminsb
	Gene Expansion and Retention Leads to a Diverse Tyrosine Kinase Superfamily in Amphioxus [My Copy] Mol Biol Evol, Vol. 25, No. 9. (1 September 2008), pp. 1841-1854. by Salvatore D'Aniello, Manuel Irimia, Ignacio Maeso, et al.Juan Pascual-Anaya, Senda Jimenez-Delgado, Stephanie Bertrand, Jordi Garcia-Fernandez posted to animal chordate evolution expansion gene_family metazoa by stajich to the group Mycology on 2008-08-17 19:30:18 as
	EVOLUTION: Modernizing the Modern Synthesis [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 196-197. by Elizabeth Pennisi posted to evolution evolutionary_theory modernsynthesis by stajich to the group Mycology on 2008-07-25 06:44:15 as along with 2 people renatomilani bpcusack
	Evolution and phylogenetic relationships of APSES proteins from Hemiascomycetes. [My Copy] FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 511-519. by B. Ramírez-Zavala, A. Domínguez posted to evolution fungi phylogenetics saccharomyces by stajich to the group Mycology on 2008-07-21 04:13:26 as
	Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106. by Emily E. Hare, Brant K. Peterson, Venky N. Iyer, Rudolf Meier, Michael B. Eisen posted to binding_site drosophila even-skipped evodevo evolution promotor transcription_factor by stajich to the group Mycology on 2008-06-28 18:16:38 as along with 8 people and 1 group lusk maximilianh Stew emptyhb djkt pradiptaray cisevol caseybrown cis-regulatory-evolution
	Tinker where the tinkering's good. [My Copy] Trends in genetics : TIG (29 May 2008) by Matthew V V. Rockman, David L L. Stern posted to cis-regulatory drosophila evodevo evolution by stajich to the group Mycology on 2008-06-22 20:12:47 as along with 1 person Stew
	Alternative splicing: A missing piece in the puzzle of intron gain. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (7 May 2008) by Rosa Tarrío, Francisco J J. Ayala, Francisco Rodríguez-Trelles posted to evolution intron_evolution intron_gain intron_loss intron_sliding by stajich to the group Mycology on 2008-06-20 18:00:42 as along with 3 people imtechnology clearbluespring bootsy
	An improved general amino acid replacement matrix. [My Copy] Molecular biology and evolution, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320. by Si Quang Q. Le, Olivier Gascuel posted to bioinformatics evolution methods molecular_evolution phylogenetics protein_evolution by stajich to the group Mycology on 2008-06-14 07:08:01 as along with 5 people BioNica lizbiogen druvus friendpine dmp
	The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain. [My Copy] Development genes and evolution, Vol. 218, No. 1. (January 2008), pp. 23-32. by M. Gauthier, B. M. Degnan posted to development evolution metazoa multicellular by stajich to the group Mycology on 2008-06-09 00:54:16 as
	Genome Analysis of the Unicellular Green Alga Chlamydomonas reinhardtii Indicates an Ancient Evolutionary Origin for Key Pattern Recognition and Cell-Signaling Protein Families [My Copy] Genetics, Vol. 179, No. 1. (1 May 2008), pp. 193-197. by Glen L. Wheeler, Diego Miranda-Saavedra, Geoffrey J. Barton posted to chlamydomonas evolution gene_family genome genome_evolution signaling by stajich to the group Mycology on 2008-05-26 16:51:35 as along with 1 person cmzmasek
	Complete mitochondrial genome sequence of the wine yeast Candida zemplinina: intraspecies distribution of a novel group-IIB1 intron with eubacterial affiliations. [My Copy] FEMS yeast research, Vol. 8, No. 2. (March 2008), pp. 311-327. by P. V. Pramateftaki, V. N. Kouvelis, P. Lanaridis, M. A. Typas posted to candida evolution intron yeast by stajich to the group Mycology on 2008-05-11 23:44:29 as along with 1 person druvus
	Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation [My Copy] Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562. by Herve Hogues, Hugo Lavoie, Adnane Sellam, et al.Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway posted to evolution fungi ribosomes transcription_factor by stajich to the group Mycology on 2008-05-05 02:58:14 as along with 1 person zwang
	Rapid large-scale evolutionary divergence in morphology and performance associated with exploitation of a different dietary resource [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4792-4795. by Anthony Herrel, Katleen Huyghe, Bieke Vanhooydonck, et al.Thierry Backeljau, Karin Breugelmans, Irena Grbac, Raoul Van Damme, Duncan J. Irschick posted to evolution by stajich to the group Mycology on 2008-05-02 02:05:55 as along with 4 people and 1 group sarar jbyoder operon iBartomeus macroevolution
	Discovering microRNAs from deep sequencing data using miRDeep [My Copy] Nat Biotech, Vol. 26, No. 4. (April 2008), pp. 407-415. by Marc R. Friedlander, Wei Chen, Catherine Adamidi, et al.Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky posted to evolution methods mirna smallrna by stajich to the group Mycology on 2008-04-25 23:40:15 as along with 13 people and 2 groups hzoltan thegoose2 natstreet fishtank ealloza GustavoLacerda iris42 tharris tmmurali giovanni jfr heliopais gdb C. elegans / WormBase microRNA
	Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila [My Copy] Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 929-938. by Jian Lu, Yonggui Fu, Supriya Kumar, et al.Yang Shen, Kai Zeng, Anlong Xu, Richard Carthew, Chung-I Wu posted to drosophila evolution mirna smallrna by stajich to the group Mycology on 2008-04-25 23:38:18 as along with 4 people and 1 group heliopais hrogers valeriehilgers lp2 microRNA
	The birth and death of microRNA genes in Drosophila. [My Copy] Nature genetics, Vol. 40, No. 3. (17 March 2008), pp. 351-355. by Jian Lu, Yang Shen, Qingfa Wu, et al.Supriya Kumar, Bin He, Suhua Shi, Richard W. Carthew, San Ming M. Wang, Chung-I I. Wu posted to drosophila evolution methods mirna smallrna by stajich to the group Mycology on 2008-04-25 23:38:05 as along with 9 people and 1 group heliopais hrogers daforerog valeriehilgers djkt bootsy emptyhb cellison megraw microRNA
	Conservation of divergent transcription in fungi [My Copy] Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211. by Philip R. Kensche, Martin Oti, Bas E. Dutilh, Martijn A. Huynen posted to divergent_genes evolution fungi transcription by stajich to the group Mycology on 2008-04-25 23:37:16 as along with 2 people GustavoLacerda nklee
	DNA from herbarium specimens settles a controversy about origins of the European potato [My Copy] Am. J. Bot., Vol. 95, No. 2. (1 February 2008), pp. 252-257. by Mercedes Ames, David M. Spooner posted to evolution herbarium hybridization plant by stajich to the group Mycology on 2008-04-24 18:28:18 as
	Evolution of microRNAs and their targets: Are all microRNAs biologically relevant? [My Copy] Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. 1779, No. 11. (November 2008), pp. 725-734. by M. Axtell posted to evolution mirna smallrna by stajich to the group Mycology on 2008-04-23 20:09:56 as along with 7 people and 1 group druvus natstreet GustavoLacerda heliopais eckart_bindewald maralena tolot27 microRNA

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review	641
selection	617
phylogenetics	579
genome	542
read	530
genetics	475
protein	466
genomics	433
network	416
biology	415
development	407
cooperation	404
phylogeny	388
transposon	360
mutation	344
language	337
model	332
human	331
structure	322
bacteria	300
bioinformatics	300
gene	291
ecology	255
drosophila	251
expression	249
networks	233
software	222
theory	191
cognition	188
adaptation	187
complexity	181
rna	181
elegans	167
celegans	166
duplication	165
c_elegans	164
nematode	164
caenorhabditis_elegans	162
wormbase	162
yeast	156
master	154
article	150
transcription	150
cancer	149
immune	147
simulation	144
sequence	143
statistics	141
culture	140
enzyme	140
dna	139
molecular	137
regulation	136
epigenetics	135
mirna	131
microrna	130
social	130
evolutionary-genomics	127
population	122
modeling	120
genetic	119
epidemiology	118
evolvability	115
behavior	114
proteins	111
alignment	110
primates	108
recombination	108
sex	107
virus	107
altruism	105
dynamics	105
gene-expression	104
domain	102
disease	100
metabolism	100
language_evolution	98
indel	97
immunology	95
plant	95
conservation	94
speciation	94
intron	93
variation	93
diversity	92
psychology	92
mind	91
game	88
modularity	88
galaxies	87
comparative_genomics	86
history	85
coevolution	82
fungi	82
interaction	82
genes	81
methods	81
modelling	81
algorithm	80
evo-devo	80

Group: Mycology - with tag evolution [67 articles] Export

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