Group: Mycology - with tag phylogenetics [34 articles] Export

Recent papers posted by members of the Mycology group with tag phylogenetics

	PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (19 September 2009), 298. by Philippe Gouret, Julie Thompson, Pierre Pontarotti posted to tree_comparison phyloinformatics phylogenetics evolutionary_biology by stajich to the group Mycology on 2009-09-24 06:06:56 as along with 4 people nuin scmelton druvus rschulz
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to evolution phylogenetics tree by stajich to the group Mycology on 2009-07-03 21:51:46 as along with 26 people and 3 groups gjuggler parnell kinestetika robertrentzsch xianjun gdb jbhiatt operon biomcgary kieran101 zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre inquil TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Journal picks iSEEM
	Phylogenetic diversity of stress signaling pathways in fungi [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009) by Elissavet Nikolaou, Ino Agriafioti, Michael Stumpf, Janet Quinn, Ian Stansfield, Alistair Brown posted to fungi phylogenetics saccharomyces stress_response by stajich to the group Mycology on 2009-02-28 19:30:51 as along with 5 people bcondon GustavoLacerda fungal gillianturgeon druvus
	Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009) by Stephen Smith, Jeremy Beaulieu, Michael Donoghue posted to methods phylogenetics phylogeny supertree treeoflife by stajich to the group Mycology on 2009-02-19 19:07:57 as along with 5 people and 1 group rs Schmidtc djkt skembel druvus iSEEM
	Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies [My Copy] Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 613-627. by Aguileta, G., Marthey, et al. S., Chiapello, H., Lebrun, -H, Rodolphe, F., Fournier, E., Gendrault-Jacquemard, A., Giraud, T. posted to fungi method phylogenetics phylogenomics phylogeny systematics by stajich to the group Mycology on 2009-02-02 22:02:19 as along with 2 people dbensasson nlapalu
	Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern “Urmetazoon” Hypothesis [My Copy] PLoS Biology, Vol. 7, No. 1. (1 January 2009), e20. by Bernd Schierwater, Michael Eitel, Wolfgang Jakob, et al.Hans-Jürgen Osigus, Heike Hadrys, Stephen L. Dellaporta, Sergios-Orestis Kolokotronis, Rob Desalle posted to evolution metazoa metazoan phylogenetics phylogeny by stajich to the group Mycology on 2009-01-28 22:34:20 as along with 4 people renatomilani biomcgary grahamc jmeppley
	Evidence for a New Root of the Tree of Life [My Copy] Systematic Biology, Vol. 57, No. 6. (2008), pp. 835-843. by James A. Lake, Jacqueline A. Servin, Craig W. Herbold, Ryan G. Skophammer posted to phylogenetics phylogeny tree treeoflife by stajich to the group Mycology on 2008-12-11 21:18:55 as
	EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates [My Copy] Genome Research, Vol. 19, No. 2. (24 February 2009), pp. 327-335. by Albert J. Vilella, Jessica Severin, Abel Ureta-Vidal, Li Heng, Richard Durbin, Ewan Birney posted to comparative_genomics duplication ensembl ensemblcompara evolution gene_tree phylogenetics tree vertebrate by stajich to the group Mycology on 2008-12-01 18:58:31 as along with 7 people and 1 group Keywan druvus operon alpae isimpson birney gjuggler Jarman Lab
	Funybase: a Fungal phylogenomic database [My Copy] BMC Bioinformatics, Vol. 9 (27 October 2008), 456. by Sylvain Marthey, Gabriela Aguileta, Francois Rodolphe, et al.Annie Gendrault, Tatiana Giraud, Elisabeth Fournier, Manuela Lopez-Villavicencio, Angelique Gautier, Marc-Henri Lebrun, Helene Chiapello posted to annotation database fungi genome phylogenetics phylogenomics by stajich to the group Mycology on 2008-10-29 22:23:48 as along with 6 people GustavoLacerda fungal nlapalu ojabado druvus nklee
	PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. [My Copy] Nucleic acids research (2 October 2008) by Tim Hulsen, Peter M A M. Groenen, Jacob de Vlieg, Wynand Alkema posted to bioinformatics comparative_genomics methods phylogenetics by stajich to the group Mycology on 2008-10-10 20:43:20 as along with 2 people druvus nuin
	Insights into the Evolutionary Origin and Genome Architecture of the Unicellular Opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica [My Copy] Journal of Eukaryotic Microbiology, Vol. 53, No. 5. (October 2006), pp. 379-384. by Inaki Ruiz-Trillo, Christopher E. Lane, John M. Archibald, Andrew J. Roger posted to fungi metazoa multicellular phylogenetics phylogeny protist by stajich to the group Mycology on 2008-10-07 22:53:30 as
	PhySIC_IST: cleaning source trees to infer more informative supertrees [My Copy] BMC Bioinformatics, Vol. 9 (04 October 2008), 413. by Celine Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez posted to methods phylogenetics supertree by stajich to the group Mycology on 2008-10-06 04:12:19 as along with 1 person nuin
	Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota) [My Copy] BMC Evolutionary Biology, Vol. 8 (22 September 2008), 257. by Thorsten H. Lumbsch, Andrew L. Hipp, Pradeep K. Divakar, Oscar Blanco, Ana Crespo posted to ascomycota fungi lichen molecular_evolution phylogenetics sequence_analysis by stajich to the group Mycology on 2008-09-23 19:10:00 as
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to bioinformatics gene_tree methods orthology paralogs phylogenetics phylogenomics by stajich to the group Mycology on 2008-08-17 18:17:13 as along with 4 people and 1 group GustavoLacerda cgaugain dandaman rvosa FAB-lab
	Multigene phylogeny of choanozoa and the origin of animals. [My Copy] PLoS ONE, Vol. 3, No. 5. (2008) by K. Shalchian-Tabrizi, M. A. Minge, M. Espelund, et al.R. Orr, T. Ruden, K. S. Jakobsen, T. Cavalier-Smith posted to animal metazoa multicellular phylogenetics phylogeny by stajich to the group Mycology on 2008-08-16 00:46:36 as
	Evolution and phylogenetic relationships of APSES proteins from Hemiascomycetes. [My Copy] FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 511-519. by B. Ramírez-Zavala, A. Domínguez posted to evolution fungi phylogenetics saccharomyces by stajich to the group Mycology on 2008-07-21 04:13:26 as
	Phylogenetic Signal in the Eukaryotic Tree of Life [My Copy] Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123. by Michael J. Sanderson posted to methods phylogenetic_marker_selection phylogenetics by stajich to the group Mycology on 2008-07-07 04:58:37 as along with 8 people and 2 groups cmzmasek caseybrown dchughes gulsacan jlgreen aprasad djkt marck Green Lab iSEEM
	An improved general amino acid replacement matrix. [My Copy] Molecular biology and evolution, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320. by Si Quang Q. Le, Olivier Gascuel posted to bioinformatics evolution methods molecular_evolution phylogenetics protein_evolution by stajich to the group Mycology on 2008-06-14 07:08:01 as along with 5 people BioNica lizbiogen druvus friendpine dmp
	DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1540-1541. by Andre Wehe, Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein posted to duplication gene_duplication gene_tree methods phylogenetics by stajich to the group Mycology on 2008-05-14 22:09:21 as along with 6 people parnell thegoose2 druvus treangen operon tharris
	Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. [My Copy] Molecular biology and evolution, Vol. 17, No. 4. (1 April 2000), pp. 540-552. by J. Castresana posted to alignment coccipaper methods phylogenetics by stajich to the group Mycology on 2008-04-21 01:28:35 as along with 9 people biomcgary ramonvidal operon druvus dmp aprasad treangen ArtemPankin cmzmasek
	A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. [My Copy] Fungal genetics and biology : FG & B, Vol. 45, No. 3. (March 2008), pp. 266-277. by J. E. Blair, M. D. Coffey, S. Y. Park, D. M. Geiser, S. Kang posted to oomycete phylogenetic_marker_selection phylogenetics phylogeny phytophthora by stajich to the group Mycology on 2008-04-19 21:42:49 as
	PAML: a program package for phylogenetic analysis by maximum likelihood. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 13, No. 5. (October 1997), pp. 555-556. by Z. Yang posted to coccipaper codon_model methods molecular_evolution paml phylogenetics by stajich to the group Mycology on 2008-04-19 21:34:23 as along with 15 people and 2 groups seb1 thegoose2 alexeid druvus jmjimenez bjorns chrn chad_davis indigoviolet penka BioNica pv usagi-kirin tharris skumagai EisenLab Nie
	Testing Congruence in Phylogenomic Analysis [My Copy] Systematic Biology, Vol. 57, No. 1. (2008), pp. 104-115. by Jessica W. Leigh, Edward Susko, Manuela Baumgartner, Andrew J. Roger posted to methods phylogenetics phylogenomics by stajich to the group Mycology on 2008-03-14 21:08:27 as
	Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota). [My Copy] Mycol Res, Vol. 111, No. Pt 9. (September 2007), pp. 1133-1141. by H. T. Lumbsch, I. Schmitt, A. Mangold, M. Wedin posted to evolution fungi homoplasy phylogenetics by stajich to the group Mycology on 2008-03-03 22:15:30 as
	AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 581-583. by Johan A. Nylander, James C. Wilgenbusch, Dan L. Warren, David L. Swofford posted to mcmc phylogenetics by stajich to the group Mycology on 2008-02-14 18:58:45 as along with 2 people aprasad mailund
	megB1, a novel macroevolutionary genomic marker of the fungal phylum Basidiomycota. [My Copy] Biosci Biotechnol Biochem, Vol. 71, No. 8. (August 2007), pp. 1927-1939. by K. Babasaki, H. Neda, H. Murata posted to basidiomycota phylogenetics by stajich to the group Mycology on 2007-12-24 03:19:22 as
	EvolveAGene 3: A DNA coding sequence evolution simulation program : Nature Precedings [My Copy] by Barry G. Hall posted to dna phylogenetics simulation by stajich to the group Mycology on 2007-12-18 19:38:41 as
	Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution [My Copy] Genome Biology, Vol. 8, No. 7. (16 July 2007), R141. by Matthew Hahn posted to duplication gene_tree phylogenetics reconciliation by stajich to the group Mycology on 2007-12-06 22:48:10 as along with 1 person bpcusack
	Evaluation of the models handling heterotachy in phylogenetic inference [My Copy] BMC Evolutionary Biology, Vol. 7 (01 November 2007), 206. by Yan Zhou, Nicolas Rodrigue, Nicolas Lartillot, Herve Philippe posted to heterotachy methods phylogenetics phylogenomics by stajich to the group Mycology on 2007-12-06 22:47:24 as
	Profiling Phylogenetic Informativeness [My Copy] Systematic Biology, Vol. 56, No. 2. (2007), pp. 222-231. by Jeffrey P. Townsend posted to evolution phylogenetic_marker_selection phylogenetics phylogenomics by stajich to the group Mycology on 2007-12-06 22:46:05 as along with 4 people and 1 group gjuggler aprasad rvosa Jporci FAB-lab
	Detecting and overcoming systematic errors in genome-scale phylogenies. [My Copy] Syst Biol, Vol. 56, No. 3. (June 2007), pp. 389-399. by N. Rodríguez-Ezpeleta, H. Brinkmann, B. Roure, N. Lartillot, B. F. Lang, H. Philippe posted to methods phylogenetics phylogenomics by stajich to the group Mycology on 2007-12-04 19:01:04 as along with 3 people and 1 group aprasad rvosa dandaman FAB-lab
	Species Concepts and Species Delimitation [My Copy] Systematic Biology, Vol. 56, No. 6. (2007), pp. 879-886. by Kevin De Queiroz posted to gene_tree phylogenetics phylogeny speciation by stajich to the group Mycology on 2007-12-04 18:58:27 as
	Delimiting Species without Monophyletic Gene Trees [My Copy] Systematic Biology, Vol. 56, No. 6. (2007), pp. 887-895. by Lacey L. Knowles, Bryan C. Carstens posted to gene_tree phylogenetics speciation by stajich to the group Mycology on 2007-12-04 18:58:03 as
	Automatic genome-wide reconstruction of phylogenetic gene trees [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i549-558. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to evolution genome phylogenetics synteny yeast by stajich to the group Mycology on 2007-12-04 18:10:14 as along with 7 people djkt biomcgary thegoose2 gjuggler shigepong seitentaisei tharris

Note: You may cite this page as: http://www.citeulike.org/group/3565/tag/phylogenetics

evolution	572
selection	227
mutation	198
methods	139
genomics	112
tree	101
bioinformatics	94
phylogenomics	77
phylogeny	57
alignment	55
software	54
bayesian	51
mammal	46
review	44
transposon	42
metagenomics	35
method	33
tools	29
master	28
algorithm	27
congruence	27
doctorate	27
drosophila	26
likelihood	24
model	23
prokaryote	23
arthropod	22
bacteria	21
bayes	20
diversity	20
maximum-likelihood	20
fungi	18
indel	18
primate	18
genome	17
ortholog	17
proteins	17
clustering	16
gene	16
genetics	16
rare_genomic_characters	16
database	15
duplication	15
molecular_clock	15
protein	15
systematics	15
bioinformatics_software	14
comparative_genomics	14
parsimony	14
ploscb08	14
comparative	13
recombination	13
simulation	13
horizontal_transfer	12
molecular_evolution	12
platyrrhini	12
polyploidy	12
retroelement	12
bat	11
gene_tree	11
horizontal-gene-transfer	11
mcmc	11
microbes	11
sequence	11
virus	11
ecology	10
speciation	10
statistics	10
annotation	9
molecular_markers	9
nsfprop	9
protein-protein_interaction	9
root_eutheria	9
tree_visualization	9
visualization	9
classification	8
coalescence	8
community	8
comparative-genomics	8
comparative-sequence-analysis	8
hiv	8
long_branch_attraction	8
model-selection	8
molecular	8
mrbayes	8
msa	8
similarity	8
supertree	8
theria	8
tree-of-life	8
analysis	7
archaea	7
codon_bias	7
congruence_landscapes	7
functional	7
metazoa	7
repeats	7
rna	7
taxonomy	7
yeast	7

Group: Mycology - with tag phylogenetics [34 articles] Export

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