Group: Mycology - with tag shortread [11 articles] Export

Recent papers posted by members of the Mycology group with tag shortread

	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to shortread methods bioinformatics assembly by stajich to the group Mycology on 2009-10-02 16:01:50 as along with 10 people djkt n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson druvus neils
	Benchmarking Next-Generation Transcriptome Sequencing for Functional and Evolutionary Genomics [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2731-2744. by John G. Gibbons, Eric M. Janson, Chris T. Hittinger, Mark Johnston, Patrick Abbot, Antonis Rokas posted to transcription_profiling shortread nextgensequencing gene_expression by stajich to the group Mycology on 2009-09-26 22:37:40 as along with 7 people djkt mlog kiekyon biomcgary GustavoLacerda natstreet druvus
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to bioinformatics genome mapping nextgensequencing sequencing shortread by stajich to the group Mycology on 2009-05-22 17:40:49 as along with 22 people and 3 groups heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Journal picks Bioinformatics
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by D. W. Bryant, W. K. Wong, T. C. Mockler posted to assembly bioinformatics methods nextgensequencing shortread by stajich to the group Mycology on 2009-02-28 19:32:31 as along with 10 people and 1 group hzoltan GustavoLacerda GeeSharpMinor jfr n00c dakelley pengchy natstreet idoerg druvus Bioinformatics
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to bioinformatics chipseq methods nextgensequencing shortread by stajich to the group Mycology on 2009-02-19 00:11:11 as along with 19 people and 1 group hzoltan darian n00c polivares idonaldson tonamswish ewilban1 humburg Thaverkamp natstreet druvus cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to assembly genome sequencing shortread solexa by stajich to the group Mycology on 2008-12-08 19:48:45 as along with 18 people darian n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to binding_site bioinformatics chipseq computational_biology methods shortread solexa by stajich to the group Mycology on 2008-09-26 16:02:11 as along with 24 people and 1 group hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to assembly bacteria genome shortread solexa by stajich to the group Mycology on 2008-09-26 16:01:15 as along with 17 people and 4 groups skembel n00c operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen
	Sequencing of natural strains of Arabidopsis thaliana with short reads [My Copy] Genome Research (September 2008) by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to arabidopsis population_genetics population_genomics resequencing shortread snp by stajich to the group Mycology on 2008-09-25 22:18:30 as along with 2 people natstreet druvus
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research by Heng Li, J. Ruan, R. Durbin posted to bioinformatics methods nextgensequencing shortread solexa by stajich to the group Mycology on 2008-09-01 06:20:33 as along with 1 person and 1 group GustavoLacerda EisenLab
	Statistical issues in the analysis of Illumina data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Mark Dunning, Nuno B. Morais, Andy Lynch, Simon Tavare, Matthew Ritchie posted to methods shortread solexa statistics by stajich to the group Mycology on 2008-04-25 16:11:11 as along with 12 people daforerog natstreet druvus ptrobajo akdess heliopais neveaire RockHI thomaskelder srp33 guhjy Stew

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assembly	13
bioinformatics	12
methods	11
solexa	10
sequencing	9
nextgensequencing	8
genome	7
chipseq	5
r	4
bioconductor	3
mapping	3
nextgen	3
algorithm	2
alignment	2
bacteria	2
binding_site	2
computational_biology	2
gene_expression	2
illumina	2
nextgenseq	2
sequence	2
statistics	2
transcription_profiling	2
454	1
analysis	1
analysis-tool	1
array	1
assessment	1
data	1
exploration	1
genomeassembly	1
high-throughput	1
highthroughput	1
informatics	1
informatics_tools	1
input	1
insilico	1
mirna	1
next-gen-seq	1
package	1
quality	1
r-project	1
review	1
short-read	1
software	1
solid	1
wholegenome	1

Group: Mycology - with tag shortread [11 articles] Export

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