Group: Mycology - with tag solexa [19 articles] Export

Recent papers posted by members of the Mycology group with tag solexa

	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to bioinformatics methods nextgensequencing resequencing snp solexa by stajich to the group Mycology on 2009-07-01 18:57:14 as along with 16 people and 2 groups humburg hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus malcook Journal picks SIMR bioinformatics
	Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3264-3269. by Moran Yassour, Tommy Kaplan, Hunter B. Fraser, et al.Joshua Z. Levin, Jenna Pfiffner, Xian Adiconis, Gary Schroth, Shujun Luo, Irina Khrebtukova, Andreas Gnirke, Chad Nusbaum, Dawn-Anne Thompson, Nir Friedman, Aviv Regev posted to resequencing solexa yeast by stajich to the group Mycology on 2009-04-01 00:23:50 as along with 8 people hzoltan fstrozzi GustavoLacerda stubrown jfr GeeSharpMinor jmcq provero
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to assembly genome sequencing shortread solexa by stajich to the group Mycology on 2008-12-08 19:48:45 as along with 17 people n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to binding_site bioinformatics chipseq computational_biology methods shortread solexa by stajich to the group Mycology on 2008-09-26 16:02:11 as along with 24 people and 1 group hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to assembly bacteria genome shortread solexa by stajich to the group Mycology on 2008-09-26 16:01:15 as along with 17 people and 4 groups skembel n00c operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research by Heng Li, J. Ruan, R. Durbin posted to bioinformatics methods nextgensequencing shortread solexa by stajich to the group Mycology on 2008-09-01 06:20:33 as along with 1 person and 1 group GustavoLacerda EisenLab
	Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. [My Copy] Current biology : CB, Vol. 18, No. 10. (20 May 2008), pp. 758-762. by C. Addo-Quaye, T. W. Eshoo, D. P. Bartel, M. J. Axtell posted to bioinformatics illumina methods mirna sequencing sirna smallrna solexa by stajich to the group Mycology on 2008-06-13 01:19:25 as along with 4 people and 1 group natstreet GustavoLacerda heliopais giovenko microRNA
	Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. [My Copy] Nature biotechnology, Vol. 26, No. 8. (9 August 2008), pp. 941-946. by Marcelo A. German, Manoj Pillay, Dong-Hoon H. Jeong, et al.Amit Hetawal, Shujun Luo, Prakash Janardhanan, Vimal Kannan, Linda A. Rymarquis, Kan Nobuta, Rana German, Emanuele De Paoli, Cheng Lu, Gary Schroth, Blake C. Meyers, Pamela J. Green posted to bioinformatics htg methods mirna sequencing smallrna solexa by stajich to the group Mycology on 2008-06-13 01:11:30 as along with 11 people and 1 group danaiancu guhjy valeriehilgers natstreet inesdesantiago GustavoLacerda lptolik heliopais giovenko jfr megraw microRNA
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to bioinformatics gene_expression methods rnaseq sequencing solexa by stajich to the group Mycology on 2008-06-11 21:57:15 as along with 48 people and 2 groups AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda CPI UU SIMR bioinformatics
	The new paradigm of flow cell sequencing [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by Robert A. Holt, Steven J. M. Jones posted to 454 genome illumina nextgensequencing sequencing solexa by stajich to the group Mycology on 2008-06-02 20:17:41 as along with 18 people n00c mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science In Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted to rnaseq solexa transcription by stajich to the group Mycology on 2008-05-02 06:49:25 as along with 24 people hzoltan bartjacobse GustavoLacerda debasis dbensasson cfvillalta rdowell poschm jmcq waszak michaelbarton djkt urgi semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo
	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets [My Copy] Genome Research, Vol. 18, No. 3. (7 March 2008), pp. 393-403. by David S. Johnson, Wei Li, D. Benjamin Gordon, et al.Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek, Christoph M. Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J. Farnham, Philipp Kapranov, David A. Nix, Thomas R. Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland D. Green, Jun S. Song, Scott A. Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D. Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C. Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P. Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M. Myers, Jason D. Lieb, X. Shirley Liu posted to chipseq sequencing solexa by stajich to the group Mycology on 2008-05-02 02:05:43 as along with 12 people and 1 group fenghezi jfr kengg djkt xiaobeizhao cabbagezs idonaldson caseybrown magusina lp2 gracio gdb BergmanLab
	Statistical issues in the analysis of Illumina data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Mark Dunning, Nuno B. Morais, Andy Lynch, Simon Tavare, Matthew Ritchie posted to methods shortread solexa statistics by stajich to the group Mycology on 2008-04-25 16:11:11 as along with 12 people daforerog natstreet druvus ptrobajo akdess heliopais neveaire RockHI thomaskelder srp33 guhjy Stew
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:52:07 as along with 23 people ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:51:49 as along with 16 people and 1 group operon n00c robsyme dakelley acn druvus nmohelli natstreet timflutre ghattem azazello GustavoLacerda niallhaslam flexer jwhitney iris42 DeNovoAssembly-SIMR
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:51:32 as along with 15 people and 3 groups n00c GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley azazello Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen gatech-compgenomics
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research In Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly solexa by stajich to the group Mycology on 2008-04-01 21:51:06 as along with 42 people and 2 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR
	Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. [My Copy] Genome research, Vol. 18, No. 4. (19 April 2008), pp. 610-621. by Ryan D. Morin, Michael D. O'Connor, Malachi Griffith, et al.Florian Kuchenbauer, Allen Delaney, Anna-Liisa L. Prabhu, Yongjun Zhao, Helen McDonald, Thomas Zeng, Martin Hirst, Connie J. Eaves, Marco A. Marra posted to bioinformatics human mirna sequencing solexa by stajich to the group Mycology on 2008-02-19 22:01:54 as along with 11 people and 1 group hzoltan giovenko ealloza fishtank inesdesantiago GustavoLacerda heliopais maralena jfr caseybrown gdb microRNA
	Whole-genome sequencing and variant discovery in C. elegans - Nature Methods [My Copy] Nature Methods by Ladeana posted to celegans coverage genome population resequencing snp solexa strain worm by sharpton to the group Mycology on 2008-01-29 18:56:46 as

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sequencing	149
illumina	129
genome-analyzer	75
analyzer	43
454	39
assembly	39
bioinformatics	24
genome	16
methods	16
software	16
solid	14
alignment	12
snp	12
resequencing	11
review	11
ht_sequencing	10
shortread	10
algorithm	9
expression	8
human	8
mapping	8
mirna	8
read-mapping	8
short-read	8
transcriptome	8
2009	7
base-calling	6
chipseq	6
chromatin	6
gene_expression	6
maq	6
methylation	6
microarray	6
rna-seq	6
sanger	6
abi	5
arabidopsis	5
chip-seq	5
deep-seq	5
genomics	5
high-throughput-sequencing	5
quality	5
rna	5
rnaseq	5
snp-calling	5
statistics	5
variation	5
annotation	4
capture	4
cnv	4
cpg	4
dna-methylation	4
enrichment	4
epigenetics	4
genome-wide	4
next-gen-seq	4
next-gen_sequencing	4
next_gen_sequencing	4
nextgensequencing	4
pipeline	4
smallrna	4
snp-discovery	4
technology	4
tool	4
transcription	4
analysis-tool	3
bacteria	3
bisulfite	3
dataset	3
denovo	3
error-model	3
evolution	3
gene	3
hts	3
method	3
mouse	3
next_generation	3
next_generation_sequencing	3
nextgenerationsequencing	3
nextgenseq	3
ngs	3
short	3
structural	3
swift	3
transcriptomics	3
wga	3
2008	2
binding_site	2
emulsion	2
h4k20me1	2
heliscope	2
insulator	2
metagenomics	2
microrna_microarray	2
muscle	2
parameter_estimation	2
reads	2
rolexa	2
sequence	2
sirna	2

Group: Mycology - with tag solexa [19 articles] Export

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