Group: gatech-compgenomics - library 33 articles Export

	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted to qual by azazello to the group gatech-compgenomics on 2008-03-25 13:59:11 as along with 13 people and 1 group rneches foxpowa APRegier ArtemPankin hpaces Neeperando bcondon semrich operon catmat AaronDarling mariakmejia druvus Khavkin's lab
	Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 9. (4 March 2008), pp. 3473-3478. by Christoph Schoen, Jochen Blom, Heike Claus, et al.Anja Schramm-GlÃ¼ck, Petra Brandt, Tobias MÃ¼ller, Alexander Goesmann, Biju Joseph, Sebastian Konietzny, Oliver Kurzai, Corinna Schmitt, Torben Friedrich, Burkhard Linke, Ulrich Vogel, Matthias Frosch posted to qual by azazello to the group gatech-compgenomics on 2008-03-24 13:38:46 as along with 2 people druvus martainn
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to qual by azazello to the group gatech-compgenomics on 2008-03-21 15:41:38 as along with 12 people n00c APRegier jessopher natstreet druvus idoerg dakelley GustavoLacerda orzenil guhjy nedwards iris42
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to qual by azazello to the group gatech-compgenomics on 2008-03-21 15:40:48 as along with 15 people and 3 groups n00c GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology
	Pyrobayes: an improved base caller for SNP discovery in pyrosequences [My Copy] Nat Meth, Vol. 5, No. 2. (13 February 2008), pp. 179-181. by Aaron R. Quinlan, Donald A. Stewart, Michael P. Stromberg, Gabor T. Marth posted to no-tag by azazello to the group gatech-compgenomics on 2008-03-21 15:38:46 as along with 9 people n00c jonilaserson natstreet druvus hpaces orzenil jmeppley guhjy mariakmejia
	A general approach to single-nucleotide polymorphism discovery [My Copy] Nat Genet, Vol. 23, No. 4. (December 1999), pp. 452-456. by Gabor T. Marth, Ian Korf, Mark D. Yandell, et al.Raymond T. Yeh, Zhijie Gu, Hamideh Zakeri, Nathan O. Stitziel, Ladeana Hillier, Pui-Yan Kwok, Warren R. Gish posted to qual by azazello to the group gatech-compgenomics on 2008-03-21 15:37:44 as along with 4 people n00c gpappas Ayest farhat
	Hawkeye: an interactive visual analytics tool for genome assemblies [My Copy] Genome Biology, Vol. 8, No. 3. (09 March 2007), R34. by Michael Schatz, Adam Phillippy, Ben Shneiderman, Steven Salzberg posted to no-tag by azazello to the group gatech-compgenomics on 2008-02-12 23:36:36 as along with 11 people and 1 group darian n00c joule Thaverkamp hpaces orzenil GustavoLacerda natstreet druvus stajich Neeperando Mycology
	Characterization of ST-4821 complex, a unique Neisseria meningitidis clone. [My Copy] Genomics, Vol. 91, No. 1. (January 2008), pp. 78-87. by J. Peng, L. Yang, F. Yang, et al.J. Yang, Y. Yan, H. Nie, X. Zhang, Z. Xiong, Y. Jiang, F. Cheng, X. Xu, S. Chen, L. Sun, W. Li, Y. Shen, Z. Shao, X. Liang, J. Xu, Q. Jin posted to meningitidis by tpreeprem to the group gatech-compgenomics on 2008-01-28 21:10:13 as
	A sequencing method based on real-time pyrophosphate. [My Copy] Science, Vol. 281, No. 5375. (17 July 1998) by M. Ronaghi, M. Uhlén, P. Nyrén posted to pyrosequencing by tpreeprem to the group gatech-compgenomics on 2008-01-28 06:43:22 as along with 3 people idoerg kieran101 bozdagd
	Improved performance of pyrosequencing using single-stranded DNA-binding protein. [My Copy] Anal Biochem, Vol. 286, No. 2. (15 November 2000), pp. 282-288. by M. Ronaghi posted to pyrosequencing by tpreeprem to the group gatech-compgenomics on 2008-01-28 06:36:15 as along with 1 person bozdagd
	Pyrosequencing sheds light on DNA sequencing. [My Copy] Genome research, Vol. 11, No. 1. (1 January 2001), pp. 3-11. by M. Ronaghi posted to pyrosequencing by tpreeprem to the group gatech-compgenomics on 2008-01-28 06:32:44 as along with 7 people seb1 dzunkova mariakmejia kieran101 darioacha balicea bozdagd
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to 454 by tpreeprem to the group gatech-compgenomics on 2008-01-26 21:17:47 as along with 38 people and 4 groups n00c rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG Green Lab iSEEM
	The Genome Assembly Archive: A New Public Resource [My Copy] PLoS Biology, Vol. 2, No. 9. (1 September 2004), e285. by Steven L. Salzberg, Deanna Church, Michael Dicuccio, Eugene Yaschenko, James Ostell posted to assembly software by tpreeprem to the group gatech-compgenomics on 2008-01-25 20:45:51 as along with 1 person GustavoLacerda
	Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by S. A. van Hijum, A. L. Zomer, O. P. Kuipers, J. Kok posted to scaffolding by azazello to the group gatech-compgenomics on 2008-01-25 17:14:23 as along with 1 person AaronDarling
	Projector: automatic contig mapping for gap closure purposes. [My Copy] Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003) by S. A. van Hijum, A. L. Zomer, O. P. Kuipers, J. Kok posted to scaffolding by azazello to the group gatech-compgenomics on 2008-01-25 17:13:26 as
	Comparative genome assembly. [My Copy] Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248. by M. Pop, A. Phillippy, A. L. Delcher, S. L. Salzberg posted to assembly comparasion by tpreeprem to the group gatech-compgenomics on 2008-01-22 06:54:31 as along with 11 people and 1 group robsyme dakelley natstreet druvus treangen azazello wenhan urgi mariakmejia Neeperando Ema MBLAB
	A whole-genome assembly of Drosophila. [My Copy] Science (New York, N.Y.), Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204. by E. W. Myers, G. G. Sutton, A. L. Delcher, et al.I. M. Dew, D. P. Fasulo, M. J. Flanigan, S. A. Kravitz, C. M. Mobarry, K. H. Reinert, K. A. Remington, E. L. Anson, R. A. Bolanos, H. H. Chou, C. M. Jordan, A. L. Halpern, S. Lonardi, E. M. Beasley, R. C. Brandon, L. Chen, P. J. Dunn, Z. Lai, Y. Liang, D. R. Nusskern, M. Zhan, Q. Zhang, X. Zheng, G. M. Rubin, M. D. Adams, J. C. Venter posted to assembly by tpreeprem to the group gatech-compgenomics on 2008-01-17 01:45:30 as along with 8 people and 2 groups dakelley taroleo Neeperando bluto azazello wenhan yoanjacquemin cisevol MBLAB Drosophila-Genetics-Genomics-2008
	The greedy path-merging algorithm for contig scaffolding [My Copy] J. ACM, Vol. 49, No. 5. (September 2002), pp. 603-615. by Daniel H. Huson, Knut Reinert, Eugene W. Myers posted to algorithm by tpreeprem to the group gatech-compgenomics on 2008-01-17 01:41:30 as along with 2 people dakelley azazello
	The greedy path-merging algorithm for sequence assembly [My Copy] In RECOMB '01: Proceedings of the fifth annual international conference on Computational biology (2001), pp. 157-163. by Daniel H. Huson, Knut Reinert, Eugene Myers posted to algorithm by tpreeprem to the group gatech-compgenomics on 2008-01-17 01:36:38 as
	Genome Sequence Assembly: Algorithms and Issues [My Copy] posted to algorithms and assembly genome issues sequence by vineith to the group gatech-compgenomics on 2008-01-16 15:03:15 as along with 1 person tpreeprem
	PCAP: A Whole-Genome Assembly Program [My Copy] Genome Research, Vol. 13, No. 9. (1 September 2003), pp. 2164-2170. by Xiaoqiu Huang, Jianmin Wang, Srinivas Aluru, Shiaw-Pyng Yang, LaDeana Hillier posted to no-tag by vineith to the group gatech-compgenomics on 2008-01-16 14:54:02 as along with 4 people mpizbioinfo natstreet wenhan Neeperando
	Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes. [My Copy] Microbiology (Reading, England), Vol. 152, No. Pt 12. (1 December 2006), pp. 3733-3749. by Julie Dunning C. Hotopp, Renata Grifantini, Nikhil Kumar, et al.Yih Ling L. Tzeng, Derrick Fouts, Elisabetta Frigimelica, Monia Draghi, Marzia Monica M. Giuliani, Rino Rappuoli, David S. Stephens, Guido Grandi, Hervé Tettelin posted to functional meningitidis by tpreeprem to the group gatech-compgenomics on 2008-01-16 05:26:26 as along with 3 people azazello disrael treangen
	Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58 [My Copy] Science, Vol. 287, No. 5459. (10 March 2000), pp. 1809-1815. by Hervé Tettelin, Nigel J. Saunders, John Heidelberg, et al.Alex C. Jeffries, Karen E. Nelson, Jonathan A. Eisen, Karen A. Ketchum, Derek W. Hood, John F. Peden, Robert J. Dodson, William C. Nelson, Michelle L. Gwinn, Robert Deboy, Jeremy D. Peterson, Erin K. Hickey, Daniel H. Haft, Steven L. Salzberg, Owen White, Robert D. Fleischmann, Brian A. Dougherty, Tanya Mason, Anne Ciecko, Debbie S. Parksey, Eric Blair, Henry Cittone, Emily B. Clark, Matthew D. Cotton, Terry R. Utterback, Hoda Khouri, Haiying Qin, Jessica Vamathevan, John Gill, Vincenzo Scarlato, Vega Masignani, Mariagrazia Pizza, Guido Grandi, Li Sun, Hamilton O. Smith, Claire M. Fraser, Richard E. Moxon, Rino Rappuoli, Craig J. Venter posted to meningitidis sequence by tpreeprem to the group gatech-compgenomics on 2008-01-16 04:37:08 as along with 2 people treangen karenidwilson
	Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18. [My Copy] PLoS Genet, Vol. 3, No. 2. (16 February 2007) by S. D. Bentley, G. S. Vernikos, L. A. Snyder, et al.C. Churcher, C. Arrowsmith, T. Chillingworth, A. Cronin, P. H. Davis, N. E. Holroyd, K. Jagels, M. Maddison, S. Moule, E. Rabbinowitsch, S. Sharp, L. Unwin, S. Whitehead, M. A. Quail, M. Achtman, B. Barrell, N. J. Saunders, J. Parkhill posted to meningitidis sequence by tpreeprem to the group gatech-compgenomics on 2008-01-16 04:21:14 as
	Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491. [My Copy] Nature, Vol. 404, No. 6777. (30 March 2000), pp. 502-506. by J. Parkhill, M. Achtman, K. D. James, et al.S. D. Bentley, C. Churcher, S. R. Klee, G. Morelli, D. Basham, D. Brown, T. Chillingworth, R. M. Davies, P. Davis, K. Devlin, T. Feltwell, N. Hamlin, S. Holroyd, K. Jagels, S. Leather, S. Moule, K. Mungall, M. A. Quail, M. A. Rajandream, K. M. Rutherford, M. Simmonds, J. Skelton, S. Whitehead, B. G. Spratt, B. G. Barrell posted to meningitidis sequence by tpreeprem to the group gatech-compgenomics on 2008-01-16 03:55:53 as along with 1 person treangen
	Comparison Of 454 Sequencing Platform With Traditional Sanger Sequencing: A Case Study With De Novo Sequencing Of Prochlorococcus Marinus NATL2A Genome [My Copy] by Feng Chen, Joseph Alessi, Edward Kirton, Vasanth Singan, Paul Richardson posted to 454 comparasion by tpreeprem to the group gatech-compgenomics on 2008-01-16 03:00:17 as
	Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology [My Copy] BMC Genomics, Vol. 7 (24 October 2006), 272. by Foo Cheung, Brian J. Haas, Susanne M. D. Goldberg, Gregory D. May, Yongli Xiao, Christopher D. Town posted to 454 sequencing by tpreeprem to the group gatech-compgenomics on 2008-01-16 02:43:48 as along with 4 people maren orzenil usagi-kirin tonia_schwartz
	ARACHNE: A Whole-Genome Shotgun Assembler [My Copy] Genome Res., Vol. 12, No. 1. (1 January 2002), pp. 177-189. by Serafim Batzoglou, David B. Jaffe, Ken Stanley, et al.Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P. Mesirov, Eric S. Lander posted to arachne assembly software by tpreeprem to the group gatech-compgenomics on 2008-01-16 02:36:32 as along with 11 people and 2 groups natstreet dakelley bpb dayjm balajis indigoviolet balicea ccr azazello wenhan Neeperando EisenLab MBLAB
	454 sequencing put to the test using the complex genome of barley [My Copy] BMC Genomics, Vol. 7 (26 October 2006), 275. by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J. Close, Beat Keller, Nils Stein posted to 454 by tpreeprem to the group gatech-compgenomics on 2008-01-16 02:35:06 as along with 7 people and 2 groups orzenil GustavoLacerda jmeppley balicea ghattem azazello cisevol MBLAB BergmanLab
	High-throughput sequence alignment using Graphics Processing Units [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 474. by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney posted to gpu sequencing software by tpreeprem to the group gatech-compgenomics on 2008-01-16 02:34:53 as along with 20 people and 2 groups cthachuk aheilbut druvus polivares naoya n00c natstreet rschulz operon orzenil Yanno guhjy sephy lusk laughcry nedwards mdimon cndewey heliopais urgi BergmanLab KCL & UCL Bioinformatics
	Optical mapping as a routine tool for bacterial genome sequence finishing [My Copy] BMC Genomics, Vol. 8, No. 1. (14 September 2007), 321. by Phil Latreille, Stacie Norton, Barry Goldman, et al.John Henkhaus, Nancy Miller, Brad Barbazuk, Helge Bode, Creg Darby, Zijin Du, Steve Forst, Sophie Gaudriault, Brad Goodner, Heidi G. Blair, Steven Slater posted to assembly optical by tpreeprem to the group gatech-compgenomics on 2008-01-16 02:33:33 as along with 1 person nnnagara
	Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey [My Copy] BMC Genomics, Vol. 8 (24 May 2007), 132. by Kankshita Swaminathan, Kranthi Varala, Matthew E. Hudson posted to 454 assembly by tpreeprem to the group gatech-compgenomics on 2008-01-16 02:31:38 as along with 5 people and 1 group orzenil floatingpoint ghattem GustavoLacerda bozdagd BergmanLab
	Accuracy and quality of massively parallel DNA pyrosequencing [My Copy] Genome Biology, Vol. 8, No. 7. (20 July 2007), R143. by Susan Huse, Julie Huber, Hilary Morrison, Mitchell Sogin, David Welch posted to 454 by azazello to the group gatech-compgenomics on 2008-01-14 21:34:38 as along with 17 people and 2 groups nfparrish druvus n00c jlgreen Thaverkamp orzenil mmartin floatingpoint Huub_odc gpappas jmeppley mblwhoi grahamc GustavoLacerda blobbybirdman Olaf_Ilzins bozdagd iSEEM Bioinformatics

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scaffolding	2
comparasion	2
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Group: gatech-compgenomics - library 33 articles Export

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