Group: Motif Discovery - library 39 articles Export

	Statistics review 13: receiver operating characteristic curves. [My Copy] Crit Care, Vol. 8, No. 6. (December 2004), pp. 508-512. by V. Bewick, L. Cheek, J. Ball posted to statistics by nklee to the group Motif Discovery on 2008-05-09 03:21:51 as along with 1 person guhjy
	Assessment of composite motif discovery methods. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by K. Klepper, G. K. Sandve, O. Abul, J. Johansen, F. Drablos posted to composite evaluation by nklee to the group Motif Discovery on 2008-04-16 08:25:34 as along with 8 people wowalz chad_davis maximilianh idonaldson xili03 csdhwang isimpson yoonk
	An efficient method for statistical significance calculation of transcription factor binding sites. [My Copy] Bioinformation, Vol. 2, No. 5. (2007), pp. 169-174. by Z. Qian, L. Lu, L. Qi, Y. Li posted to significance statistical by nklee to the group Motif Discovery on 2008-04-14 02:23:24 as along with 3 people maximilianh idonaldson isimpson
	Detecting cis-regulatory binding sites for cooperatively binding proteins [My Copy] Nucleic AcidsRes., Vol. 0, No. 0. by Liesbeth van Oeffelen1, Pierre Cornelis, Wouter Van Delm, Fedor De Ridder, Bart De Moor, Yves Moreau1 posted to cis-regulatory composite discovery motif by nklee to the group Motif Discovery on 2008-04-10 06:45:32 as
	A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli [My Copy] PLoS Computational Biology, Vol. 4, No. 3. (2008), e1000044. by Jason Ernst, Qasim K. Beg, Krin A. Kay, Ga´bor B. Zsi, Zolta´n N. Oltvai, Ziv Bar-Joseph1 posted to semi-supervised by nklee to the group Motif Discovery on 2008-04-03 06:44:20 as along with 1 person jjray
	A profile-based deterministic sequential Monte Carlo algorithm for motif discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 1. (1 January 2008), pp. 46-55. by K. C. Liang, X. Wang, D. Anastassiou posted to no-tag by nklee to the group Motif Discovery on 2008-04-01 08:23:44 as along with 6 people wowalz grahamc cjeans maximilianh idonaldson isimpson
	JASPAR: an open-access database for eukaryotic transcription factor binding profiles [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D91-94. by Albin Sandelin, Wynand Alkema, Par Engstrom, Wyeth W. Wasserman, Boris Lenhard posted to database eukaryotic jaspar by nklee to the group Motif Discovery on 2008-04-01 02:08:44 as along with 5 people and 1 group antonkratz aalibes indigoviolet jguinney heliopais EisenLab
	A deterministic motif finding algorithm with application to the human genome [My Copy] Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1047-1054. by Lawrence S. Hon, Ajay N. Jain posted to deterministic discovery motif search by nklee to the group Motif Discovery on 2008-03-30 03:08:58 as along with 5 people wowalz shwu idonaldson dquest maximilianh
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted to discovery motif by nklee to the group Motif Discovery on 2008-03-25 21:12:01 as along with 17 people and 1 group cerca ilyashl TRHvidsten leelarcombe kieran101 ana brant cwbrown aswin cjeans zwang cabbagezs maximilianh idonaldson sb_journal_club kristen barwil EisenLab
	Analysis of computational approaches for motif discovery [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (May 2006), 8. by Nan Li, Martin Tompa posted to analysis discovery motif tools by th2do to the group Motif Discovery on 2008-03-19 01:55:25 as
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nature Biotechnology, Vol. 23, No. 1. (January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart D. De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, James J. Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to benchmarking binding discovery sites motif by th2do to the group Motif Discovery on 2008-03-19 01:55:25 as
	Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (August 2007), 283. by Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic posted to no-tag by th2do to the group Motif Discovery on 2008-03-19 01:55:25 as
	MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs [My Copy] BMC Bioinformatics, Vol. 8 (March 2007), 100. by Mamoru Kato, Tatsuhiko Tsunoda posted to algorithm genetic discovery motif by th2do to the group Motif Discovery on 2008-03-19 01:55:25 as
	Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. [My Copy] Genome Biol, Vol. 5, No. 9. (2004) by B. P. Berman, B. D. Pfeiffer, T. R. Laverty, et al.S. L. Salzberg, G. M. Rubin, M. B. Eisen, S. E. Celniker posted to enhancers discovery motif by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	Computational prediction of transcription-factor binding site locations. [My Copy] Genome Biol, Vol. 5, No. 1. (2003) by M. L. Bulyk posted to survey discovery motif by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	Self-organizing hierarchic networks for pattern recognition in protein sequence [My Copy] Protein Sci, Vol. 5, No. 1. (January 1996), pp. 72-82. by J. Hanke, G. Beckmann, P. Bork, J. G. Reich posted to map motif organizing self discovery by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations. [My Copy] J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945. by S. Gunewardena, P. Jeavons, Z. Zhang posted to no-tag by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	Discriminative motif discovery in DNA and protein sequences using the DEME Algorithm [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Emma Redhead, Timothy Bailey posted to discovery discriminative motif by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (2004) by Davide Cora, Ferdinando Di Cunto, Paolo Provero, Lorenzo Silengo, Michele Caselle posted to no-tag by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	A novel ensemble learning method for de novo computational identification of DNA binding sites [My Copy] BMC Bioinformatics, Vol. 8 (July 2007), 249. by Arijit Chakravarty, Jonathan M. Carlson, Radhika S. Khetani, Robert H. Gross posted to ensemble discovery motif by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	An algorithm for finding signals of unknown length in DNA sequences. [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001) by G. Pavesi, G. Mauri, G. Pesole posted to length unknown discovery motif by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	Regulatory motif discovery using a population clustering evolutionary algorithm. [My Copy] IEEE/ACM Trans Comput Biol Bioinform, Vol. 4, No. 3. (2007), pp. 403-414. by M. A. Lones, A. M. Tyrrell posted to algorithm genetic discovery motif by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as along with 1 person csdhwang
	Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Victor Levitsky, Elena Ignatieva, Elena Ananko, et al.Igor Turnaev, Tatyana Merkulova, Nikolay Kolchanov, T. Hodgman posted to algorithm genetic discovery motif by th2do to the group Motif Discovery on 2008-03-19 01:55:24 as
	Data Augmentation Algorithms for Detecting Conserved Domains in Protein Sequences: A Comparative Study [My Copy] J. Proteome Res. (December 2007) by Chengpeng Bi posted to no-tag by th2do to the group Motif Discovery on 2008-03-19 01:55:23 as
	Informative priors based on transcription factor structural class improve de novo motif discovery [My Copy] Bioinformatics, Vol. 22, No. 14. (July 2006), pp. e384-392. by Leelavati Narlikar, Raluca Gordan, Uwe Ohler, Alexander J. Hartemink posted to bibtex-import discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:36:55 as
	TFBS Identification Based on Genetic Algorithm with Combined Representations and Adaptive Post-processing. [My Copy] Bioinformatics (December 2007) by Tak, Kwong, Kin posted to algorithm bibtex-import genetic discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:36:55 as
	iGibbs: Improving Gibbs motif sampler for proteins by sequence clustering and iterative pattern sampling [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 671-681. by Sun Kim, Zhiping Wang, Mehmet Dalkilic posted to bibtex-import clustering gibbs discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:36:55 as
	Prediction of transcription factor binding sites using ChIP-chip and phylogenetic footprinting data [My Copy] Journal of Bioinformatics and Computational Biology, Vol. 5, No. 1. (February 2007), pp. 105-116. by Markus T. Friberg posted to bibtex-import chip comparative genomic discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:36:55 as
	Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. [My Copy] Nat Biotechnol, Vol. 21, No. 4. (April 2003), pp. 435-439. by Z. S. Qin, L. A. Mccue, W. Thompson, L. Mayerhofer, C. E. Lawrence, J. S. Liu posted to bibtex-import clustering discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:36:55 as
	A novel approach to identifying regulatory motifs in distantly related genomes [My Copy] Genome Biology, Vol. 6, No. 13. (2005) by Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal posted to bibtex-import clustering comparative footprinting genomic discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:36:54 as
	Distinguishing Regulatory DNA From Neutral Sites [My Copy] Genome Res., Vol. 13, No. 1. (January 2003), pp. 64-72. by Laura Elnitski, Ross C. Hardison, Jia Li, et al.Shan Yang, Diana Kolbe, Pallavi Eswara, Michael J. O'Connor, Scott Schwartz, Webb Miller, Francesca Chiaromonte posted to bibtex-import neutral site discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:36:54 as
	Efficient Detection of Network Motifs [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 3, No. 4. (Oct.-Dec. 2006), pp. 347-359. by Sebastian Wernicke posted to algorithm bibtex-import biology computing design detection graphs methodsnetwork motif networks principles random sampling structural subgraphs discovery by th2do to the group Motif Discovery on 2008-03-18 23:18:05 as
	Regulatory Motif Discovery Using a Population Clustering Evolutionary Algorithm [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 4, No. 3. (July-Sept. 2007), pp. 403-414. by M. A. Lones, A. M. Tyrrell posted to algorithm bibtex-import biology biophysics clustering computation computing data discovery diversity dna evolutionary frequency matrix models molecular motif population position processesdna promoter regulatory sequences sets solution stochastic synthetic by th2do to the group Motif Discovery on 2008-03-18 23:18:05 as
	Motif Search in Graphs: Application to Metabolic Networks [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 3, No. 4. (Oct.-Dec. 2006), pp. 360-368. by Vincent Lacroix, Cristina G. Fernandes, Marie F. Sagot posted to bibtex-import biochemistry biology biophysicsbiochemical computing evolution features graphs metabolic metabolism molecular motif networks pathway reaction search structural discovery by th2do to the group Motif Discovery on 2008-03-18 23:18:04 as
	Motif discoveries in unaligned molecular sequences using self-organizing neural networks [My Copy] Neural Networks, IEEE Transactions on, Vol. 17, No. 4. (July 2006), pp. 919-928. by Derong Liu, Xiaoxu Xiong, B. Dasgupta, Huaguang Zhang posted to algorithms bibtex-import biology biophysics classification complexity computational computing discoveries dna identification input molecular motif nets networks neural pattern patterns problems protein proteins search self-organizing sequence sequences unaligned discovery by th2do to the group Motif Discovery on 2008-03-18 23:18:04 as along with 1 person csdhwang
	Finding a Common Motif of RNA Sequences Using Genetic Programming: The GeRNAMo System [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 4, No. 4. (Oct.-Dec. 2007), pp. 596-610. by S. Michal, T. Ivry, Schalit O. Cohen, M. Sipper, D. Barash posted to algorithms bibtex-import biology biophysics compounds computing consensus genetic macromolecules molecular motif organic prediction programming rna sequences sequencesgernamo system discovery by th2do to the group Motif Discovery on 2008-03-18 23:18:04 as
	Improved K-means clustering algorithm for exploring local protein sequence motifs representing common structural property [My Copy] NanoBioscience, IEEE Transactions on, Vol. 4, No. 3. (Sept. 2005), pp. 255-265. by Wei Zhong, G. Altun, R. Harrison, P. C. Tai, Yi Pan posted to activities algorithm algorithms analysis bibtex-import bioinformatics biology biophysics clustering common computing configurations conformation greedy improved initialization k-means local method molecular motifs property protein proteins sequence similarity statistical structural discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:18:04 as along with 2 people venkat_ritch csdhwang
	Computational Identification of Transcription Factor Binding Sites via a Transcription-factor-centric Clustering (TFCC) Algorithm [My Copy] Journal of Molecular Biology, Vol. 318, No. 1. (April 2002), pp. 71-81. by Zhou Zhu, Yitzhak Pilpel, George M. Church posted to bibtex-import clustering discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:18:04 as
	A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling [My Copy] Bioinformatics, Vol. 17, No. 12. (December 2001), pp. 1113-1122. by Gert Thijs, Magali Lescot, Kathleen Marchal, et al.Stephane Rombauts, Bart De Moor, Pierre Rouze, Yves Moreau posted to background bibtex-import model discovery motif by th2do to the group Motif Discovery on 2008-03-18 23:18:03 as

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discovery	29
motif	29
bibtex-import	15
algorithm	7
biology	6
clustering	6
computing	6
genetic	5
molecular	5
biophysics	4
algorithms	3
networks	3
search	3
sequences	3
structural	3
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graphs	2
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chip	1
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discriminative	1
diversity	1
enhancers	1
ensemble	1
eukaryotic	1
evaluation	1
evolution	1
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features	1
footprinting	1
frequency	1
gibbs	1
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identification	1
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initialization	1
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jaspar	1
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length	1
local	1
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nets	1
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Group: Motif Discovery - library 39 articles Export

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