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Group: VUMCGenomics - library [304 articles]

Recent papers posted by members of the VUMCGenomics group
  • Comprehensive MicroRNA Profiling Reveals a Unique Human Embryonic Stem Cell Signature Dominated by a Single Seed Sequence
    Stem Cells (10 April 2008), 2007-1081.
    by Louise C Laurent, Jing Chen, Igor Ulitsky, Franz J Mueller, Christina Lu, Ron Shamir, Jian B Fan, Jeanne F Loring
    posted to cell micro mirna profiling rna stem by slevy03 to the group VUMCGenomics on 2008-04-11 22:32:48 as ** along with 1 person jfr
  • The Genomic Landscapes of Human Breast and Colorectal Cancers.
    Science (11 October 2007)
    by Laura D D Wood, D Williams W Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J J Leary, Dong Shen, Simina M M Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A Wilson, Joshua S S Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H Park, Charit L L Pethiyagoda, P V Krishna V Pant, Dennis G G Ballinger, Andrew B B Sparks, James Hartigan, Douglas R R Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D Markowitz, Giovanni Parmigiani, Kenneth W W Kinzler, Victor E E Velculescu, Bert Vogelstein
    posted to breast cancer colon genomics by slevy03 to the group VUMCGenomics on 2008-03-24 19:31:30 as ** along with 14 people cerami gwenknight jyuh tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani
  • Comparative genomics and experimental promoter analysis reveal functional liver-specific elements in mammalian hepatic lipase genes
    BMC Genomics, Vol. 8 (11 April 2007), 99.
    by Diederik van Deursen, Gert-Jan Botma, Hans Jansen, Adrie JM Verhoeven
    posted to genomics hnf4 by slevy03 to the group VUMCGenomics on 2008-03-24 19:30:45 as ** along with 1 person yevishere
  • Sex-specific, male-line transgenerational responses in humans
    European Journal of Human Genetics, Vol. aop, No. current.
    by Marcus E Pembrey, Lars O Bygren, Gunnar Kaati, Sören Edvinsson, Kate Northstone, Michael Sjöström, Jean A Golding
    posted to bibtex-import epigenetics hypothesis inheritance reproduction by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • notes Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors
    Cell, Vol. 126, No. 4. (August 2006), pp. 663-676.
    by Kazutoshi Takahashi, Shinya Yamanaka
    posted to bibtex-import cells epigenetics stem by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • notes Transgeneration memory of stress in plants
    Nature, Vol. 442, No. 7106. (August 2006), pp. 1046-1049.
    by Jean Molinier, Gerhard Ries, Cyril Zipfel, Barbara Hohn
    posted to bibtex-import epigenetics plant science by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • notes Genome-Wide Location and Function of DNA Binding Proteins
    Science, Vol. 290, No. 5500. (December 2000), pp. 2306-2309.
    by Bing Ren, Francois Robert, John J Wyrick, Oscar Aparicio, Ezra G Jennings, Itamar Simon, Julia Zeitlinger, Jorg Schreiber, Nancy Hannett, Elenita Kanin, Thomas L Volkert, Christopher J Wilson, Stephen P Bell, Richard A Young
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • The Transcription Factor Nerve Growth Factor-Inducible Protein A Mediates Epigenetic Programming: Altering Epigenetic Marks by Immediate-Early Genes
    J. Neurosci., Vol. 27, No. 7. (February 2007), pp. 1756-1768.
    by Ian C Weaver, Ana C D'Alessio, Shelley E Brown, Ian C Hellstrom, Sergiy Dymov, Shakti Sharma, Moshe Szyf, Michael J Meaney
    posted to bibtex-import epigenetics neuroscience by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • notes Methylation-Specific Oligonucleotide Microarray: A New Potential for High-Throughput Methylation Analysis
    Genome Res., Vol. 12, No. 1. (January 2002), pp. 158-164.
    by Raad S Gitan, Huidong Shi, Chuan M Chen, Pearlly S Yan, Tim H Huang
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • notes Gene–environment interactions in psychiatry: joining forces with neuroscience
    Nature Reviews Neuroscience, Vol. 7, No. 7., pp. 583-590.
    by Avshalom Caspi, Terrie E Moffitt
    posted to bibtex-import epigenetics neuroscience by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • Localizing hotspots of antisense transcription
    Nucleic Acids Research, Vol. 35, No. 5. (March 2007), pp. 1488-1500.
    by Finocchiaro, Giacomo, Carro, Maria Stella, Francois, Stephanie, Parise, Paola, Dininni, Valentina, Muller, Heiko
    posted to bibtex-import bioinformatics epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:56 as ***
  • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    Nature Genetics, Vol. 39, No. 4. (March 2007), pp. 457-466.
    by Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler
    posted to bibtex-import bioinformatics epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:55 as ***
  • Evidence for an epigenetic mechanism by which Hsp90 acts as a capacitor for morphological evolution
    Nat Genet, Vol. 33, No. 1. (January 2003), pp. 70-74.
    by Vincent Sollars, Xiangyi Lu, Li Xiao, Xiaoyan Wang, Mark D Garfinkel, Douglas M Ruden
    posted to bibtex-import epigenetics evolution by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:55 as ***
  • DNA demethylation in the Arabidopsis genome
    PNAS, Vol. 104, No. 16. (April 2007), pp. 6752-6757.
    by Jon Penterman, Daniel Zilberman, Jin H Huh, Tracy Ballinger, Steven Henikoff, Robert L Fischer
    posted to bibtex-import epigenetics plant science by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:55 as ***
  • On the use of the word `epigenetic'
    Current Biology, Vol. 17, No. 7. (April 2007), pp. R233-R236.
    by Mark Ptashne
    posted to bibtex-import epigenetics reviews by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:55 as ***
  • notes Knockout Mice: Is It Just Genetics? Effect of Enriched Housing on Fibulin-4 /− Mice
    PLoS ONE, Vol. 2, No. 2. (February 2007), e229.
    by E Cudilo, Al, L Marmorstein, Baldwin Al
    posted to bibtex-import epigenetics neuroscience by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:55 as ***
  • notes In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray.
    Methods, Vol. 31, No. 1. (September 2003), pp. 90-95.
    by SK Kurdistani, M Grunstein
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:54 as ***
  • A microarray-based method for detecting methylated loci
    Journal of Human Genetics, Vol. 47, No. 8. (2002), pp. 448-451.
    by I Hatada, A Kato, S Morita, Y Obata, K Nagaoka, A Sakurada, M Sato, A Horii, A Tsujimoto, K Matsubara
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:54 as ***
  • Formaldehyde-Mediated DNA-Protein Crosslinking: A Probe for in vivo Chromatin Structures
    PNAS, Vol. 82, No. 19. (October 1985), pp. 6470-6474.
    by Mark J Solomon, Alexander Varshavsky
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:54 as ***
  • COBRA: a sensitive and quantitative DNA methylation assay.
    Nucleic Acids Res, Vol. 25, No. 12. (June 1997), pp. 2532-2534.
    by Z Xiong, PW Laird
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:54 as ***
  • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (February 2007)
    by Nathaniel DD Heintzman, Rhona KK Stuart, Gary Hon, Yutao Fu, Christina WW Ching, David, Leah OO Barrera, Sara Van Calcar, Chunxu Qu, Keith AA Ching, Wei Wang, Zhiping Weng, Roland DD Green, Gregory EE Crawford, Bing Ren
    posted to bibtex-import by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Use of capillary electrophoresis to study methylation patterns in DNA
    Ultrasensitive Biochemical Diagnostics, Vol. 2680, No. 1. (1996), pp. 214-218.
    by Karl Voss, Pieter Roos, Jian Z Zhang, Norman J Dovichi
    edited by Gerald E Cohn, Steven A Soper, Winston CH Chen
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Restriction landmark genome scanning
    Methods, Vol. 27, No. 2. (June 2002), pp. 144-149.
    by Joseph F Costello, Dominic J Smiraglia, Christoph Plass
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    Nature Genetics, Vol. 37, No. 8. (July 2005), pp. 853-862.
    by Michael Weber, Jonathan J Davies, David Wittig, Edward J Oakeley, Michael Haase, Wan L Lam, Dirk Schübeler
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • A Toxicogenomics Approach to Identify New Plausible Epigenetic Mechanisms of Ochratoxin A Carcinogenicity in Rat
    Toxicological Sciences, Vol. 89, No. 1. (January 2006), pp. 120-134.
    by Marin M Kuan, S Nestler, C Verguet, C Bezencon, D Piguet, R Mansourian, J Holzwarth, M Grigorov, T Delatour, P Mantle, C Cavin, B Schilter
    posted to bibtex-import epigenetics toxicology by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • High-performance capillary electrophoretic method for the quantification of 5-methyl 2'-deoxycytidine in genomic DNA: application to plant, animal and human cancer tissues.
    Electrophoresis, Vol. 23, No. 11. (June 2002), pp. 1677-1681.
    by MF Fraga, E Uriol, Borja L Diego, M Berdasco, M Esteller, Ca\ MJ nal, R Rodríguez
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Epigenetic disruption of ribosomal RNA genes and nucleolar architecture in DNA methyltransferase 1 (Dnmt1) deficient cells
    Nucl. Acids Res., Vol. 35, No. 7. (April 2007), pp. 2191-2198.
    by Jesus Espada, Esteban Ballestar, Raffaella Santoro, Mario F Fraga, Ana V Garea, Attila Nemeth, Lidia L Serra, Santiago Ropero, Agustin Aranda, Helena Orozco, Vanessa Moreno, Angeles Juarranz, Juan C Stockert, Gernot Langst, Ingrid Grummt, Wendy Bickmore, Manel Esteller
    posted to bibtex-import epigenetics methylation by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Histone modifications and silencing prior to DNA methylation of a tumor suppressor gene
    Cancer Cell, Vol. 3, No. 1. (January 2003), pp. 89-95.
    by Kurtis E Bachman, Ben H Park, Ina Rhee, Harith Rajagopalan, James G Herman, Stephen B Baylin, Kenneth W Kinzler, Bert Vogelstein
    posted to bibtex-import cancer epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Specific protection of methylated CpGs in mammalian nuclei
    Cell, Vol. 58, No. 3. (August 1989), pp. 509-517.
    by Francisco Antequera, Donald Macleod, Adrian P Bird
    posted to bibtex-import epigenetics methylation by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • CpG islands as gene markers in the vertebrate nucleus
    Trends in Genetics, Vol. 3 (1987), pp. 342-347.
    by Adrian P Bird
    posted to bibtex-import epigenetics methylation by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin
    Science, Vol. 316, No. 5827. (May 2007), pp. 1050-1054.
    by Bing Li, Madelaine Gogol, Mike Carey, Daeyoup Lee, Chris Seidel, Jerry L Workman
    posted to bibtex-import chromatin epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • notes Bypassing genomic imprinting allows seed development
    Nature (April 2007)
    by Moritz K Nowack, Reza Shirzadi, Nico Dissmeyer, Andreas Dolf, Elmar Endl, Paul E Grini, Arp Schnittger
    posted to bibtex-import epigenetics imprinting by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo
    PLoS Biology, Vol. 5, No. 5. (May 2007), e117.
    by Stefano De Renzis, Olivier Elemento, Saeed Tavazoie, Eric F Wieschaus
    posted to bibtex-import development epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • Consumption of folate-related nutrients and metabolism of arsenic in Bangladesh
    Am J Clin Nutr, Vol. 85, No. 5. (May 2007), pp. 1367-1374.
    by Julia E Heck, Mary V Gamble, Yu Chen, Joseph H Graziano, Vesna Slavkovich, Faruque Parvez, John A Baron, Geoffrey R Howe, Habibul Ahsan
    posted to bibtex-import epigenetics nutrition by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:53 as ***
  • DNA methylation affects nuclear organization, histone modifications, and linker histone binding but not chromatin compaction
    J. Cell Biol., Vol. 177, No. 3. (May 2007), pp. 401-411.
    by Nick Gilbert, Inga Thomson, Shelagh Boyle, James Allan, Bernard Ramsahoye, Wendy A Bickmore
    posted to bibtex-import chromatin epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:52 as ***
  • Histones associated with downregulated genes are hypo-acetylated in Huntington's disease models
    Hum. Mol. Genet., Vol. 16, No. 11. (June 2007), pp. 1293-1306.
    by Ghazaleh S Vakili, Berengere Bouzou, Caroline L Benn, Mee O Kim, Prianka Chawla, Ryan P Overland, Kelly E Glajch, Eva Xia, Zhihua Qiu, Steven M Hersch, Timothy W Clark, George J Yohrling, Jang
    posted to bibtex-import disease epigenetics neuroscience by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:52 as ***
  • Capillary electrophoretic analysis of genomic DNA methylation levels
    Nucl. Acids Res., Vol. 31, No. 2. (January 2003), e2.
    by Dirk Stach, Oliver J Schmitz, Stephan Stilgenbauer, Axel Benner, Hartmut Dohner, Manfred Wiessler, Frank Lyko
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:52 as ***
  • Methylome profiling of cancer cells by amplification of inter-methylated sites (AIMS)
    Nucl. Acids Res., Vol. 30, No. 7. (April 2002), e28.
    by Jordi Frigola, Maria Ribas, Rosa A Risques, Miguel A Peinado
    posted to bibtex-import epigenetics methods by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:52 as ***
  • Behavioural analysis of an inherited speech and language disorder: comparison with acquired aphasia
    Brain, Vol. 125, No. 3. (March 2002), pp. 452-464.
    by KE Watkins, NF Dronkers, Vargha F Khadem
    posted to bibtex-import disease epigenetics neuroscience by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:52 as ***
  • Modulation of Nucleosome Dynamics in Huntington's Disease
    Hum. Mol. Genet. (April 2007), ddm064.
    by Edward C Stack, Steven J Del Signore, Ruth L Carter, Byoung Y Soh, Darlene R Goldstein, Samantha Matson, Sarah Goodrich, Angela L Markey, Kerry Cormier, Sean W Hagerty, Karen Smith, Hoon Ryu, Robert J Ferrante
    posted to bibtex-import chromatin disease epigenetics neuroscience by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:52 as ***
  • Computational prediction of methylation status in human genomic sequences.
    Proc Natl Acad Sci U S A, Vol. 103, No. 28. (July 2006), pp. 10713-10716.
    by R Das, N Dimitrova, Z Xuan, RA Rollins, F Haghighi, JR Edwards, J Ju, TH Bestor, MQ Zhang
    posted to bibtex-import bioinformatics epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:52 as ***
  • Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns
    Genome Res., Vol. 17, No. 1. (January 2007), pp. 74-81.
    by Tae Y Roh, Gang Wei, Catherine M Farrell, Keji Zhao
    posted to bibtex-import bioinformatics chromatin epigenetics by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:51 as ***
  • CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure.
    PLoS Genet, Vol. 2, No. 3. (March 2006)
    by C Bock, M Paulsen, S Tierling, T Mikeska, T Lengauer, J Walter
    posted to bibtex-import bioinformatics epigenetics methylation by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:50 as ***
  • Large-scale structure of genomic methylation patterns.
    Genome Res (December 2005)
    by Robert AA Rollins, Fatemeh Haghighi, John RR Edwards, Rajdeep Das, Michael QQ Zhang, Jingyue Ju, Timothy HH Bestor
    posted to bibtex-import bioinformatics epigenetics methylation by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:50 as ***
  • methBLAST and methPrimerDB: web-tools for PCR based methylation analysis
    BMC Bioinformatics, Vol. 7 (November 2006), 496.
    by Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Evi Michels, Anne De Paepe, Guy Bottu, David Coornaert, Robert Herzog, Frank Speleman, Jo Vandesompele
    posted to bibtex-import bioinformatics epigenetics methylation by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:50 as ***
  • Transgenerational inheritance of epigenetic states at the murine AxinFu allele occurs after maternal and paternal transmission
    PNAS, Vol. 100, No. 5. (March 2003), pp. 2538-2543.
    by Vardhman K Rakyan, Suyinn Chong, Marnie E Champ, Peter C Cuthbert, Hugh D Morgan, Keith V Luu, Emma Whitelaw
    posted to bibtex-import epigenetics inheritance by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:50 as ***
  • The contributions of normal variation and genetic background to mammalian gene expression.
    Genome Biol, Vol. 7, No. 3. (March 2006)
    by Colin Pritchard, David Coil, Sarah Hawley, Li Hsu, Peter S Nelson
    posted to bibtex-import epigenetics evolution inheritance by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:50 as ***
  • Epigenetic Transgenerational Actions of Endocrine Disruptors and Male Fertility
    Science, Vol. 308, No. 5727. (June 2005), pp. 1466-1469.
    by Matthew D Anway, Andrea S Cupp, Mehmet Uzumcu, Michael K Skinner
    posted to bibtex-import epigenetics inheritance by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:50 as ***
  • RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse
    Nature, Vol. 441, No. 7092., pp. 469-474.
    by Minoo Rassoulzadegan, Val\ Grandjean, Pierre Gounon, St\ Vincent, Isabelle Gillot, Fran\ Cuzin
    posted to bibtex-import epigenetics evolution inheritance by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:49 as ***
  • Transgenerational epigenetic imprints on mate preference
    PNAS, Vol. 104, No. 14. (April 2007), pp. 5942-5946.
    by David Crews, Andrea C Gore, Timothy S Hsu, Nygerma L Dangleben, Michael Spinetta, Timothy Schallert, Matthew D Anway, Michael K Skinner
    posted to bibtex-import epigenetics evolution inheritance reproduction by slevy03 to the group VUMCGenomics on 2008-03-24 17:36:49 as ***
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