XML, bioinformatics and data integration. Export

@article{citeulike:242, abstract = {Motivation: The eXtensible Markup Language (XML) is an emerging standard for structuring documents, notably for the World Wide Web. In this paper, the authors present XML and examine its use as a data language for bioinformatics. In particular, XML is compared to other languages, and some of the potential uses of XML in bioinformatics applications are presented. The authors propose to adopt XML for data interchange between databases and other sources of data. Finally the discussion is illustrated by a test case of a pedigree data model in XML. Contact: Emmanuel.Barillot@infobiogen.fr}, address = {CRI Infobiogen, 523 place des terrasses de l'agora, 91000 Evry, France.}, author = {Achard, F. and Vaysseix, G. and Barillot, E.}, citeulike-article-id = {242}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/17.2.115}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/2/115}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/11238067}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=11238067}, doi = {10.1093/bioinformatics/17.2.115}, issn = {1367-4803}, journal = {Bioinformatics}, keywords = {data-representation}, month = {February}, number = {2}, pages = {115--125}, posted-at = {2006-01-11 15:54:59}, priority = {2}, title = {XML, bioinformatics and data integration.}, url = {http://dx.doi.org/10.1093/bioinformatics/17.2.115}, volume = {17}, year = {2001} }

TY - JOUR ID - citeulike:242 L3 - citeulike-article-id:242 N2 - Motivation: The eXtensible Markup Language (XML) is an emerging standard for structuring documents, notably for the World Wide Web. In this paper, the authors present XML and examine its use as a data language for bioinformatics. In particular, XML is compared to other languages, and some of the potential uses of XML in bioinformatics applications are presented. The authors propose to adopt XML for data interchange between databases and other sources of data. Finally the discussion is illustrated by a test case of a pedigree data model in XML. Contact: Emmanuel.Barillot@infobiogen.fr IS - 2 JF - Bioinformatics SN - 1367-4803 AD - CRI Infobiogen, 523 place des terrasses de l'agora, 91000 Evry, France. EP - 125 TI - XML, bioinformatics and data integration. VL - 17 SP - 115 KW - data-representation AU - Achard, F AU - Vaysseix, G AU - Barillot, E PY - 2001/02// UR - http://dx.doi.org/10.1093/bioinformatics/17.2.115 ER -