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Group: Papers recommended by the Roscoff Plankton Group - library [63 articles]

Recent papers posted by members of the Papers recommended by the Roscoff Plankton Group group
  • Feasibility of assessing the community composition of prasinophytes at the helgoland roads sampling site with a DNA microarray.
    Applied and environmental microbiology, Vol. 74, No. 17. (September 2008), pp. 5305-5316.
  • Composition of freshwater small eukaryotes community: unexpected importance of potential parasites.
    Applied and environmental microbiology (21 March 2008)
    by Cécile Lepère, Isabelle Domaizon, Didier Debroas
  • Metagenomics reveals our incomplete knowledge of global diversity.
    Bioinformatics (Oxford, England) (13 July 2008)
    by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames
  • Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000m vertical profile in the North Pacific Subtropical Gyre
    Environmental Microbiology, Vol. 10, No. 9. (September 2008), pp. 2313-2330.
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
  • Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes.
    Current biology : CB, Vol. 18, No. 6. (25 March 2008), pp. 410-418.
  • An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566.
    by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A Eisen
  • Bosque: Integrated phylogenetic analysis software.
    Bioinformatics (Oxford, England) (1 September 2008)
    by Salvador Ramírez-Flandes, Osvaldo Ulloa
  • Microbial diversity and the genetic nature of microbial species
    Nature Reviews Microbiology, Vol. 6, No. 6., pp. 431-440.
    by Mark Achtman, Michael Wagner
  • From the Cover: A latitudinal diversity gradient in planktonic marine bacteria
    Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778.
    by Jed A Fuhrman, Joshua A Steele, Ian Hewson, Michael S Schwalbach, Mark V Brown, Jessica L Green, James H Brown
  • Improved Methodology for Identification of Protists and Microalgae from Plankton Samples Preserved in Lugol's Iodine Solution: Combining Microscopic Analysis with Single-Cell PCR
    Appl. Environ. Microbiol., Vol. 74, No. 8. (15 April 2008), pp. 2505-2510.
    by Barbara M Auinger, Karin Pfandl, Jens Boenigk
  • Chloroplast DNA content in Dinophysis (Dinophyceae) from different cell cycle stages is consistent with kleptoplasty
    Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Susanna Minnhagen, Wanderson F Carvalho, Paulo S Salomon, Sven Janson
  • Unbiased Whole-Genome Amplification Directly From Clinical Samples
    Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 954-964.
    by Seiyu Hosono, Fawad A Faruqi, Frank B Dean, Yuefen Du, Zhenyu Sun, Xiaohong Wu, Jing Du, Stephen F Kingsmore, Michael Egholm, Roger S Lasken
  • Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214.
    by Mircea Podar, Carl B Abulencia, Marion Walcher, Don Hutchison, Karsten Zengler, Joseph A Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller
  • From the Cover: Extreme polyploidy in a large bacterium
    Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6730-6734.
    by Jennifer E Mendell, Kendall D Clements, Howard J Choat, Esther R Angert
  • Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560.
    by Yuichi Hongoh, Vineet K Sharma, Tulika Prakash, Satoko Noda, Todd D Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Atsushi Toyoda, Masahira Hattori, Moriya Ohkuma
  • Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments
    Environmental Microbiology, Vol. 7, No. 7. (July 2005), pp. 1024-1028.
    by Juan M Gonzalez, Carmen C Portillo, Cesareo Saiz-Jimenez
  • Application of Combined Morphological-Molecular Approaches to the Identification of Planktonic Protists from Environmental Samples
    The Journal of Eukaryotic Microbiology, Vol. 0, No. ja. (0)
    by Joel R Duff, BALL Hope, Peter J Lavrentyev
  • A Hierarchical View of Convergent Evolution in Microbial Eukaryotes
    Journal of Eukaryotic Microbiology, Vol. 55, No. 2. (April 2008), pp. 59-68.
    by Brian S Leander
  • Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
  • Microbial Population Structures in the Deep Marine Biosphere
    Science, Vol. 318, No. 5847. (5 October 2007), pp. 97-100.
    by Julie A Huber, David B Welch, Hilary G Morrison, Susan M Huse, Phillip R Neal, David A Butterfield, Mitchell L Sogin
  • Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar raphidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics
    Phycological Research, Vol. 55, No. 3. (September 2007), pp. 185-192.
  • Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system
    Limnology and Oceanography, Vol. 53, No. 3. (2008), pp. 922-935.
    by Andrew K Hamilton, C Lovejoy, PE Galand, RG Ingram
  • Genetic Diversity of Parasitic Dinoflagellates in the Genus Amoebophrya and Its Relationship to Parasite Biology and Biogeography
    Journal of Eukaryotic Microbiology, Vol. 55, No. 1. (February 2008), pp. 1-8.
    by Sunju Kim, Myung GIL Park, Keun-Yong Kim, Chang-Hoon Kim, Wonho Yih, Jong SOO Park, Wayne D Coats
  • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.
    Environmental microbiology (18 February 2008)
    by Heike Stevens, Osvaldo Ulloa
  • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    Nature Reviews Microbiology, Vol. 6, No. 5., pp. 339-348.
    by Rudolf Amann, Bernhard M Fuchs
  • The emergence of automated high-frequency flow cytometry: revealing temporal and spatial phytoplankton variability
    J. Plankton Res., Vol. 30, No. 3. (1 March 2008), pp. 333-343.
    by Melilotus Thyssen, Glen A Tarran, Mikhail V Zubkov, Ross J Holland, Gerald Gregori, Peter H Burkill, Michel Denis
  • Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000186.
    by Steven L Salzberg, Daniel D Sommer, Daniela Puiu, Vincent T Lee
  • Metagenomics: Read length matters
    Appl. Environ. Microbiol. (11 January 2008), AEM.02181-07.
    by Eric K Wommack, Jaysheel Bhavsar, Jacques Ravel
  • A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes
    Systematic and Applied Microbiology, Vol. In Press, Corrected Proof
    by Jörg Peplies, Renzo Kottmann, Wolfgang Ludwig, Frank O Glöckner
  • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity.
    The ISME journal (8 May 2008)
    by Stephen J J Bent, Larry J J Forney
  • An original adaptation of photosynthesis in the marine green alga Ostreococcus
    Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7881-7886.
    by Pierre Cardol, Benjamin Bailleul, Fabrice Rappaport, Evelyne Derelle, Daniel Béal, Cécile Breyton, Shaun Bailey, Francis A Wollman, Arthur Grossman, Hervé Moreau, Giovanni Finazzi
  • High bacterivory by the smallest phytoplankton in the North Atlantic Ocean
    Nature (10 August 2008)
    by Mikhail V Zubkov, Glen A Tarran
  • Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea
    Environmental Microbiology, Vol. 7, No. 5. (May 2005), pp. 649-659.
    by Arantxa Lopez-Lopez, Sergio G Bartual, Lucas Stal, Olga Onyshchenko, Francisco Rodriguez-Valera
  • CULTURE OF THE HETEROTROPHIC DINOFLAGELLATE PROTOPERIDINIUM CRASSIPES (DINOPHYCEAE) WITH NONCELLULAR FOOD ITEMS
    Journal of Phycology, Vol. 44, No. 4. (August 2008), pp. 1090-1092.
    posted to heterotrophy dinoflagellate culture by vaulot to the group Papers recommended by the Roscoff Plankton Group on 2008-09-02 09:08:14 as **
  • Eukaryotic diversity in an anaerobic aquifer polluted with landfill leachate.
    Applied and environmental microbiology, Vol. 74, No. 13. (July 2008), pp. 3959-3968.
  • PCR Amplification of Microsatellites from Single Cells of Karenia brevis Preserved in Lugols Iodine Solution
    Marine Biotechnology, Vol. 10, No. 2. (March 2008), pp. 122-127.
  • Life-Cycle and Genome of OtV5, a Large DNA Virus of the Pelagic Marine Unicellular Green Alga Ostreococcus tauri.
    PLoS ONE, Vol. 3 (2008), e2250.
    by Evelyne Derelle1, Conchita Ferraz, Marie-Line Escande, Sophie Eychenié, Richard Cooke, Gwenaël Piganeau1, Yves Desdevises, Laure Bellec, Hervé Moreau1, Nigel Grimsley
  • Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
    Proceedings of the National Academy of Sciences (8 May 2008), 0711303105.
    by Annelie Pernthaler, Anne E Dekas, Titus C Brown, Shana K Goffredi, Tsegereda Embaye, Victoria J Orphan
  • Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations.
    Applied and environmental microbiology, Vol. 72, No. 6. (June 2006), pp. 4293-4301.
  • Feasibility of transferring fluorescent in situ hybridization probes to an 18S rRNA gene phylochip and mapping of signal intensities.
    Applied and environmental microbiology, Vol. 74, No. 9. (May 2008), pp. 2814-2821.
    by K Metfies, LK Medlin
  • Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 2005-2010.
    by Wesley D Swingley, Min Chen, Patricia C Cheung, Amber L Conrad, Liza C Dejesa, Jicheng Hao, Barbara M Honchak, Lauren E Karbach, Ahmet Kurdoglu, Surobhi Lahiri, Stephen D Mastrian, Hideaki Miyashita, Lawrence Page, Pushpa Ramakrishna, Soichirou Satoh, Matthew W Sattley, Yuichiro Shimada, Heather L Taylor, Tatsuya Tomo, Tohru Tsuchiya, Zi T Wang, Jason Raymond, Mamoru Mimuro, Robert E Blankenship, Jeffrey W Touchman
  • Expanding Oxygen-Minimum Zones in the Tropical Oceans
    Science, Vol. 320, No. 5876. (2 May 2008), pp. 655-658.
    by Lothar Stramma, Gregory C Johnson, Janet Sprintall, Volker Mohrholz
  • Marine Polyphosphate: A Key Player in Geologic Phosphorus Sequestration
    Science, Vol. 320, No. 5876. (2 May 2008), pp. 652-655.
    by Julia Diaz, Ellery Ingall, Claudia Benitez-Nelson, David Paterson, Martin D de Jonge, Ian Mcnulty, Jay A Brandes
  • Exploring Ocean Biogeochemistry by Single-Cell Microprobe Analysis of Protist Elemental Composition
    Journal of Eukaryotic Microbiology, Vol. 55, No. 3. (June 2008), pp. 151-162.
    by Benjamin S Twining, Stephen B Baines, Stefan Vogt, E de Jong, D Martin
  • Development of a PNA probe for the detection of the toxic dinoflagellate Takayama pulchella
    Harmful Algae, Vol. 7, No. 4. (June 2008), pp. 495-503.
    by Bangqin Huang, Jianjun Hou, Senjie Lin, Jixin Chen, Huasheng Hong
  • The ALEX CHIP--Development of a DNA chip for identification and monitoring of Alexandrium
    Harmful Algae, Vol. 7, No. 4. (June 2008), pp. 485-494.
    by Christine Gescher, Katja Metfies, Linda K Medlin
  • Molecular probe sets for the detection of toxic algae for use in sandwich hybridization formats
    J. Plankton Res., Vol. 30, No. 4. (1 April 2008), pp. 439-448.
    by Sonja Diercks, Katja Metfies, Linda K Medlin
  • A Cryptic Algal Group Unveiled: A Plastid Biosynthesis Pathway in the Oyster Parasite Perkinsus marinus.
    Molecular biology and evolution (20 March 2008)
    by Motomichi Matsuzaki, Haruko Kuroiwa, Tsuneyoshi Kuroiwa, Kiyoshi Kita, Hisayoshi Nozaki
  • Plastid-Derived Genes in the Non-Photosynthetic Alveolate Oxyrrhis marina.
    Molecular biology and evolution (2 April 2008)
    by Claudio H H Slamovits, Patrick J J Keeling
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