Group: McCammon - with tag protein_dynamics [16 articles] Export

Recent papers posted by members of the McCammon group with tag protein_dynamics

	Docking Flexible Peptide to Flexible Protein by Molecular Dynamics Using Two Implicit-Solvent Models: An Evaluation in Protein Kinase and Phosphatase Systems [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 43. (29 October 2009), pp. 14343-14354. by Zunnan Huang, Chung F. Wong posted to solvation protein_dynamics protein-ligand peptides molecular_dynamics_simulations md_simulation drug-discovery conformational_transitions binding by jmccammon to the group McCammon on 2009-11-21 20:27:49 as along with 1 person anuragsethi
	Theory of Free Energy and Entropy in Noncovalent Binding [My Copy] Chemical Reviews, Vol. 109, No. 9. (9 September 2009), pp. 4092-4107. by Huan-Xiang Zhou, Michael K. Gilson posted to protein_dynamics protein-ligand molecular_dynamics_simulations md_simulation free_energy entropy drug-discovery binding by jmccammon to the group McCammon on 2009-11-12 01:00:02 as along with 7 people and 1 group cchang agrossfield anuragsethi sobolevnrm dr_proton qshao paulschlesinger Chang group
	Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 9. (8 September 2009), pp. 2486-2502. by Christopher L. McClendon, Gregory Friedland, David L. Mobley, Homeira Amirkhani, Matthew P. Jacobson posted to protein_dynamics protein-ligand molecular_dynamics_simulations md_simulation drug-discovery binding allostery by jmccammon to the group McCammon on 2009-10-31 19:59:28 as along with 3 people anuragsethi pmung acpan
	Computation of conformational transitions in proteins by virtual atom molecular mechanics as validated in application to adenylate kinase. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 37. (15 September 2009), pp. 15673-15678. by Anil Korkut, Wayne A. Hendrickson posted to protein_dynamics molecular_mechanics_calculations functional_modes conformational_transitions coarse_grain adenylate_kinase by jmccammon to the group McCammon on 2009-10-17 20:42:54 as along with 1 person anuragsethi
	Atomistic View of the Conformational Activation of Src Kinase Using the String Method with Swarms-of-Trajectories [My Copy] Biophysical Journal, Vol. 97, No. 4. (19 August 2009), pp. L8-L10. by Wenxun Gan, Sichun Yang, Benoît Roux posted to tyrosine_kinase string_method simulation_methodology protein_dynamics molecular_dynamics_simulations md_simulation functional_modes conformational_transitions c_src by jmccammon to the group McCammon on 2009-10-14 23:04:22 as along with 1 person anuragsethi
	RedMD - Reduced molecular dynamics package [My Copy] Journal of Computational Chemistry, Vol. 30, No. 14. (2009), pp. 2364-2373. by Adam Górecki, Marcin Szypowski, Maciej D&lstrok;ugosz, Joanna Trylska posted to protein_dynamics md_simulation coarse_grain brownian_dynamics by jmccammon to the group McCammon on 2009-09-12 21:46:20 as along with 4 people anuragsethi oteri flbarroso shwu
	Detection of Functional Modes in Protein Dynamics [My Copy] PLoS Computational Biology (August 2009) by J. S. Hub, B. L. de Groot posted to proteins protein_dynamics md_simulation functional_modes coarse_grain by jmccammon to the group McCammon on 2009-09-03 01:15:01 as
	Navigating the ribosome's metastable energy landscape. [My Copy] Trends in biochemical sciences (30 July 2009) by James B. Munro, Kevin Y. Sanbonmatsu, Christian M. Spahn, Scott C. Blanchard posted to protein_dynamics review ribosome by barry to the group McCammon on 2009-08-06 23:38:31 as along with 2 people and 1 group anuragsethi reyez structural_bioinformatics
	Relating protein conformational changes to packing efficiency and disorder. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 6. (June 2009), pp. 1230-1240. by N. Bhardwaj, M. Gerstein posted to protein_dynamics by barry to the group McCammon on 2009-06-08 04:44:37 as along with 3 people and 1 group skywalkerus02 klexa sobolevnrm structural_bioinformatics
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to protein_dynamics protein_evolution protein_sequence review by barry to the group McCammon on 2009-04-23 02:50:03 as along with 22 people and 2 groups skywalkerus02 paulymer dfdong tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics baker-group
	Conservation of Side-Chain Dynamics Within a Protein Family [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony B. Law, Ernesto J. Fuentes, Andrew L. Lee posted to nmr protein_dynamics by barry to the group McCammon on 2009-04-23 02:46:58 as along with 4 people and 2 groups anuragsethi skywalkerus02 pablocarb sobolevnrm structural_bioinformatics baker-group
	Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000343. by Bosco K. Ho, David A. Agard posted to md_simulation protein_dynamics torsion_angles by barry to the group McCammon on 2009-04-06 17:55:04 as along with 5 people and 2 groups skywalkerus02 dimka operon sobolevnrm bourby baker-group structural_bioinformatics
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted to allosteric networks protein_dynamics by barry to the group McCammon on 2009-02-20 19:17:41 as along with 9 people and 2 groups anuragsethi skywalkerus02 sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin baker-group structural_bioinformatics
	Visualizing myosin–actin interaction with a genetically-encoded fluorescent strain sensor [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 44. (4 November 2008), pp. 16882-16887. by Sosuke Iwai, Taro Q. Uyeda posted to gfp myosin protein_dynamics by barry to the group McCammon on 2008-11-07 01:41:23 as along with 3 people okapi cactus melting
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to allosteric protein_dynamics by barry to the group McCammon on 2008-10-27 22:23:54 as along with 9 people and 1 group mittinatten oteri bmduggan xdeupi okapi aqeel raik ruvido zwang structural_bioinformatics
	Understanding mechanisms governing protein-protein interactions from synthetic binding interfaces [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Anthony A. Kossiakoff, Shohei Koide posted to protein_dynamics protein_protein review by barry to the group McCammon on 2008-10-02 19:21:01 as along with 2 people and 2 groups grahamc paulschlesinger structural_bioinformatics Bioinformatics

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protein_structure	198
md_simulation	68
review	59
nma	58
allosteric	47
molecular_motors	43
bioinf_methods	39
nmr	39
kinesin	38
protein_design	35
protein_sequence	33
protein_protein	29
pca	25
domain_motions	23
protein_folding	23
myosin	21
structure_comparison	20
protein_evolution	19
protein_ligand_binding	18
correlated_motions	17
molecular_dynamics	15
binding	14
free-energy	14
structural_bioinformatics	13
core_residues	12
core_structure	12
molecular_dynamics_simulations	12
conformational_transitions	11
protein_strut_func	11
mine	10
proteins	10
coarse_grain	9
drug-discovery	9
drug_design	9
eg5	9
journal	9
md	9
monastrol	9
nachr	9
ntpases	9
p-loop	9
protein-ligand	9
structure_flexible	9
allostery	8
docking	8
functional_modes	8
contacts	7
disorder	7
networks	7
normal_mode_analysis	7
torsion_angles	7
conformational_dynamics	6
enm	6
free_energy	6
gnm	6
inhibitor_design	6
kinases	6
markov	6
motor_model	6
protein_flexibility	6
protein_function	6
replica_exchange	6
smd	6
molecular_mechanics_calculations	5
relaxation	5
transition_path	5
chapt_cmn	4
clustering	4
energy_entropy	4
flexibility	4
myoglobin	4
plos	4
protein_conformations	4
protein_packing	4
protein_structure_determination	4
r	4
solvation	4
struct_decorr	4
tutorial	4
adk	3
beta-hairpin	3
brownian_dynamics	3
c_src	3
coarse-grained	3
conformation	3
f1atpase	3
first_passage	3
fret-fiona	3
g_proteins	3
mts	3
myov	3
ncd	3
protein_ligand	3
ribosome	3
sampling	3
solvent	3
swi-swii	3
time_series_analysis	3
tyrosine_kinase	3
umbrella	3

Group: McCammon - with tag protein_dynamics [16 articles] Export

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