Group: iSEEM - Hugenholtz:P [13 articles] Export

Papers posted to the group iSEEM by author Hugenholtz:P. You can also see everyone's Hugenholtz:P.

	ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2737-2738. by Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi posted to sysbio metagenomics environment annotation by djkt to the group iSEEM on 2009-10-09 16:40:27 as along with 4 people operon jmeppley dswan skembel
	Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to pyrosequencing methods diversity by skembel to the group iSEEM on 2009-09-03 20:05:56 as along with 2 people jgill jmeppley
	Annotation of metagenome short reads using proxygenes [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i7-13. by Daniel Dalevi, Natalia N. Ivanova, Konstantinos Mavromatis, et al.Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos C. Kyrpides, Victor M. Markowitz posted to metagenomics methods by skembel to the group iSEEM on 2009-04-15 18:24:29 as along with 4 people Thaverkamp druvus hpaces neils
	A bioinformatician's guide to metagenomics. [My Copy] Microbiology and molecular biology reviews : MMBR, Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted to bioinformatics metagenomics by skembel to the group iSEEM on 2009-04-15 00:46:26 as along with 38 people and 6 groups sconlan jasontsai halinat hwright michaelbarton taylor73 esyoun bluto idoerg hpaces inquil EKotlarska anphony stajich sharpton vrich vaulot adgrativol jakechen balicea dbk GustavoLacerda guhjy hessec fhalbrit Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils Katje allysonlister skato_toyaku Shared Literature Resource of the Microbial Fitness Group - MPI Bremen Papers recommended by the Roscoff Plankton Group Microbial-Ecology Translational Bioinformatics Roswell Cancer Crosstalk microbiology_nijmegen
	Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite [My Copy] Nature, Vol. 450, No. 7169., pp. 560-565. by Falk Warnecke, Peter Luginbühl, Natalia Ivanova, et al.Majid Ghassemian, Toby H. Richardson, Justin T. Stege, Michelle Cayouette, Alice C. Mchardy, Gordana Djordjevic, Nahla Aboushadi, Rotem Sorek, Susannah G. Tringe, Mircea Podar, Hector G. Martin, Victor Kunin, Daniel Dalevi, Julita Madejska, Edward Kirton, Darren Platt, Ernest Szeto, Asaf Salamov, Kerrie Barry, Natalia Mikhailova, Nikos C. Kyrpides, Eric G. Matson, Elizabeth A. Ottesen, Xinning Zhang, Myriam Hernández, Catalina Murillo, Luis G. Acosta, Isidore Rigoutsos, Giselle Tamayo, Brian D. Green, Cathy Chang, Edward M. Rubin, Eric J. Mathur, Dan E. Robertson, Philip Hugenholtz, Jared R. Leadbetter posted to metagenomic termite by jlgreen to the group iSEEM on 2008-07-25 23:45:54 as along with 6 people and 1 group Thaverkamp anphony bluto azazello wenhan carpi Green Lab
	Building on basic metagenomics with complementary technologies [My Copy] Genome Biology, Vol. 8, No. 12. (28 December 2007), 231. by Falk Warnecke, Philip Hugenholtz posted to metagenomics by jlgreen to the group iSEEM on 2008-07-25 23:45:00 as along with 3 people and 2 groups dakelley alexisfjdufresne mjetten microbiology_nijmegen Green Lab
	Quantitative phylogenetic assessment of microbial communities in diverse environments. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130. by C. von Mering, P. Hugenholtz, J. Raes, et al.S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, P. Bork posted to phylogenetics ploscb08 by jlgreen to the group iSEEM on 2008-07-25 23:31:12 as along with 18 people and 6 groups pkm michaelbarton idoerg sriesenfeld skembel kozo-ni ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes mjetten djkt structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology microbiology_nijmegen Green Lab
	Accurate phylogenetic classification of variable-length DNA fragments [My Copy] Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72. by Alice C. Mchardy, Héctor G. Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos posted to methods ploscb08 phylogenetics by jlgreen to the group iSEEM on 2008-07-25 23:29:06 as along with 10 people and 3 groups esyoun dakelley Thaverkamp skembel idoerg jmeppley bluto azazello wenhan djkt Bioinformatics MBLAB Green Lab
	Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. [My Copy] Nature methods, Vol. 4, No. 6. (29 June 2007), pp. 495-500. by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, et al.Harris Shapiro, Eugene Goltsman, Alice C. McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C. Kyrpides posted to assembly binning metagenomic methods otu ploscb08 simulation by jlgreen to the group iSEEM on 2008-07-25 23:27:12 as along with 16 people and 4 groups dakelley taylor73 sriesenfeld Thaverkamp skembel druvus Yanno oamg jmeppley bluto azazello GustavoLacerda carlk alexl mjetten djkt Glimcher_Lab Bioinformatics microbiology_nijmegen Green Lab
	Comparative Metagenomics of Microbial Communities [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to diversity egts metagenomic ploscb08 by jlgreen to the group iSEEM on 2008-07-25 22:59:38 as along with 18 people and 4 groups hwright skembel Thaverkamp Scis0000002 idoerg jbhiatt kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten djkt Microbial-Ecology anammox microbiology_nijmegen Green Lab
	NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W394-399. by T. Z. Desantis, P. Hugenholtz, K. Keller, et al.E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, G. L. Andersen posted to 16s alignment method ploscb08 webtool by djkt to the group iSEEM on 2008-07-24 18:20:03 as along with 5 people sim82 esyoun jmeppley nghoffma mcox
	Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 14. (22 September 2004), pp. 2317-2319. by T. Huber, G. Faulkner, P. Hugenholtz posted to alignment chimera method by djkt to the group iSEEM on 2008-07-24 18:12:09 as along with 2 people esyoun mcox
	Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. [My Copy] Applied and environmental microbiology, Vol. 72, No. 7. (July 2006), pp. 5069-5072. by T. Z. DeSantis, P. Hugenholtz, N. Larsen, et al.M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen posted to 16s database ploscb08 webtool by djkt to the group iSEEM on 2008-07-24 18:08:12 as along with 3 people esyoun idoerg mcox

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diversity	78
phylogenetics	74
ploscb08	74
metagenomic	52
microbes	48
metagenomics	47
review	41
evolution	35
ecology	28
16s	27
method	27
biogeography	26
empirical	23
microbiome	23
alignment	20
popgen	19
ocean	18
community	17
human	17
otu	16
sequencing	15
proteins	14
symbiosis	13
virus	13
assembly	12
methods	12
bacteria	9
genomics	9
rna	9
selection	9
simulation	9
environment	8
pyrosequencing	8
indel	7
population	6
database	5
duplication	5
ecotype	5
expression	5
gene-transfer	5
genome	5
metabolic	5
microbial	5
mlst	5
sysbio	5
bayesian	4
binning	4
clustering	4
neutral	4
pathogen	4
proteomics	4
repeats	4
statistics	4
technology	4
webtool	4
454	3
annotation	3
distance	3
entropy	3
environmental	3
estimator	3
eukaryote	3
genomic_similarity	3
gos	3
microbe	3
mutation	3
species	3
theory	3
traits	3
variation	3
acceleration	2
adaptation	2
archaea	2
bias	2
chromosome	2
comparative	2
comparativemethods	2
db	2
drift	2
functional	2
genographic	2
gradient	2
hmm	2
immunity	2
kmer	2
microarray	2
migration	2
model	2
niche	2
pangenome	2
phage	2
phylodiversity	2
phylogenetic	2
phylogenomic	2
phylogenomics	2
protein	2
rarefaction	2
recombination	2
sampling	2
sar	2
software	2
species_abundance	2
structure	2
supermatrix	2
wolbachia	2
yeast	2
11	1
abundance	1
alga	1
another	1
arisa	1
arrays	1
association	1
bacterial	1
bacterial_communities	1
bee	1
beta	1
bioinformatics	1
biomarkers	1
chimera	1
clades	1
classification	1
clone	1
clone-library	1
codon	1
community_assembly	1
community_composition	1
computing	1
conservation	1
core	1
correlation	1
cpg	1
data	1
density	1
dgge	1
disease	1
dispersal	1
distribution	1
divergence	1
dotur	1
egts	1
endemism	1
enzymes	1
estimation	1
ethics	1
eukaryotes	1
extinction	1
ffp	1
fingerprinting	1
fish	1
functionaldiversity	1
gccontent	1
genetic	1
genomes	1
genome_size	1
genome-size	1
genomic_island	1
geochemistry	1
geography	1
hgt	1
history	1
hiv	1
imm	1
incongruence	1
kinetics	1
mammals	1
marine	1
metacommunity	1
metagenome	1
metatranscriptomics	1
microbiology	1
microbiota	1
microflora	1
microscopy	1
minimess	1
missingdata	1
molclock	1
motif	1
msa	1
network	1
networks	1
parametric	1
pathways	1
pcr	1
phylogeny	1
phylotyping	1
phytoplankton	1
positive	1
private_alleles	1
prochlorococcus	1
prokaryotes	1
proteorhodopsin	1
protistists	1
pyrosequening	1
qpcr	1
rhodopsin	1
ribosome	1
rrna	1
sequence	1
shotgun	1
skin	1
snps	1
soil	1
soils	1
spatial	1
speciation	1
species_data	1
statistical	1
strain	1
supertrees	1
taxonomy	1
temoporal	1
temporal_variability	1
termite	1
testing	1
tf	1
tiling	1
trait	1
virome	1
visual	1
whole-genome-amplification	1
workflow	1
worm	1

Group: iSEEM - Hugenholtz:P [13 articles] Export

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