Group: iSEEM - with tag 16s [27 articles] Export

Recent papers posted by members of the iSEEM group with tag 16s

	Microbial community profiling for human microbiome projects: Tools, techniques, and challenges [My Copy] Genome Research, Vol. 19, No. 7. (21 July 2009), pp. 1141-1152. by Micah Hamady, Rob Knight posted to 16s clustering human methods microbiome otu review by djkt to the group iSEEM on 2009-07-01 22:03:21 as along with 6 people and 1 group jbhiatt dakelley skembel sharpton ppgardne neils Journal picks
	Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing [My Copy] PLoS Genet, Vol. 4, No. 11. (21 November 2008), e1000255. by Susan M. Huse, Les Dethlefsen, Julie A. Huber, David M. Welch, David A. Relman, Mitchell L. Sogin posted to 16s metagenomics otu phylogenetics sequencing by djkt to the group iSEEM on 2008-11-22 01:24:16 as along with 4 people and 1 group Huub_odc azazello sconlan skembel microbiology_nijmegen
	The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [My Copy] PLoS Biol, Vol. 6, No. 11. (18 November 2008), e280. by Les Dethlefsen, Sue Huse, Mitchell L. Sogin, David A. Relman posted to 16s human metagenomics microbes by djkt to the group iSEEM on 2008-11-18 23:47:20 as along with 7 people and 1 group hexaquo azazello sconlan jmeppley treangen skembel maggiecontreras Waikato - Erebus
	Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers [My Copy] Nucl. Acids Res., Vol. 36, No. 18. (1 October 2008), e120. by Zongzhi Liu, Todd Z. Desantis, Gary L. Andersen, Rob Knight posted to 16s 454 taxonomy by jlgreen to the group iSEEM on 2008-10-16 17:28:20 as along with 5 people and 2 groups esyoun skembel sconlan ojabado vaulot Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	The Airborne Metagenome in an Indoor Urban Environment [My Copy] PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1862. by Susannah G. Tringe, Tao Zhang, Xuguo Liu, et al.Yiting Yu, Wah H. Lee, Jennifer Yap, Fei Yao, Sim T. Suan, Seah K. Ing, Matthew Haynes, Forest Rohwer, Chia L. Wei, Patrick Tan, James Bristow, Edward M. Rubin, Yijun Ruan posted to 16s empirical metagenomic by djkt to the group iSEEM on 2008-08-15 17:55:03 as along with 3 people skembel vmedina09 semrich
	Toward a census of bacteria in soil. [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (21 July 2006) by P. D. Schloss, J. Handelsman posted to 16s diversity estimator ploscb08 by jlgreen to the group iSEEM on 2008-08-08 23:52:21 as along with 4 people and 2 groups anphony azazello fornstar mjetten anammox microbiology_nijmegen
	Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques [My Copy] Nature Reviews Microbiology, Vol. 6, No. 5., pp. 339-348. by Rudolf Amann, Bernhard M. Fuchs posted to 16s abundance diversity fish review by jlgreen to the group iSEEM on 2008-08-05 23:33:12 as along with 4 people and 4 groups Katje vrich vaulot Huub_odc microbiology_nijmegen Microbial-Ecology Papers recommended by the Roscoff Plankton Group Green Lab
	The rational exploration of microbial diversity [My Copy] ISME (2008) by Christopher Quince, Thomas P. Curtis, William T. Sloan posted to 16s diversity estimator metagenomic parametric ploscb08 by jlgreen to the group iSEEM on 2008-08-04 20:30:02 as along with 2 people and 1 group anphony djkt Green Lab
	High local and global diversity of Flavobacteria in marine plankton [My Copy] Environmental Microbiology, Vol. 9, No. 5. (May 2007), pp. 1253-1266. by Alonso, Cecilia, Warnecke, et al. Falk, Amann, Rudolf, Pernthaler, Jakob posted to 16s clone-library diversity by jlgreen to the group iSEEM on 2008-07-25 23:44:16 as along with 1 person and 2 groups beatrizfernandez Microbial-Ecology Green Lab
	Genotypic Diversity Within a Natural Coastal Bacterioplankton Population [My Copy] Science, Vol. 307, No. 5713. (25 February 2005), pp. 1311-1313. by Janelle R. Thompson, Sarah Pacocha, Chanathip Pharino, et al.Vanja Klepac-Ceraj, Dana E. Hunt, Jennifer Benoit, Ramahi Sarma-Rupavtarm, Daniel L. Distel, Martin F. Polz posted to 16s genome population by jlgreen to the group iSEEM on 2008-07-25 22:53:04 as along with 3 people and 1 group gjuggler yonatanf vrich Green Lab
	Biogeography and Ecological Setting of Indian Ocean Hydrothermal Vents [My Copy] Science, Vol. 294, No. 5543. (26 October 2001), pp. 818-823. by C. L. Van Dover, S. E. Humphris, D. Fornari, et al.C. M. Cavanaugh, R. Collier, S. K. Goffredi, J. Hashimoto, M. D. Lilley, A. L. Reysenbach, T. M. Shank, K. L. Von Damm, A. Banta, R. M. Gallant, D. Gotz, D. Green, J. Hall, T. L. Harmer, L. A. Hurtado, P. Johnson, Z. P. Mckiness, C. Meredith, E. Olson, I. L. Pan, M. Turnipseed, Y. Won, Young, R. C. Vrijenhoek posted to 16s assembly biogeography by jlgreen to the group iSEEM on 2008-07-25 20:25:17 as along with 1 group Green Lab
	FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Yanan Yu, Mya Breitbart, Pat Mcnairnie, Forest Rohwer posted to 16s method ploscb08 webtool by djkt to the group iSEEM on 2008-07-24 23:08:05 as
	A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. [My Copy] BMC bioinformatics, Vol. 9 (23 January 2008), 34. by Patrick D. Schloss, Jo Handelsman posted to 16s diversity metagenomic rna by djkt to the group iSEEM on 2008-07-24 18:51:25 as along with 11 people and 3 groups orzenil taylor73 idoerg jonathaneisen skembel druvus jmeppley Thaverkamp alexisfjdufresne mjetten bluto Microbial-Ecology anammox microbiology_nijmegen
	Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. [My Copy] Applied and environmental microbiology, Vol. 67, No. 9. (September 2001), pp. 4374-4376. by D. R. Singleton, M. A. Furlong, S. L. Rathbun, W. B. Whitman posted to 16s diversity ecology method ploscb08 by djkt to the group iSEEM on 2008-07-24 18:41:42 as along with 1 person mcox
	Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries [My Copy] Appl. Environ. Microbiol., Vol. 70, No. 9. (1 September 2004), pp. 5485-5492. by Patrick D. Schloss, Bret R. Larget, Jo Handelsman posted to 16s diversity ecology method ploscb08 by djkt to the group iSEEM on 2008-07-24 18:39:53 as along with 2 people jmeppley mcox
	Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. [My Copy] Applied and environmental microbiology, Vol. 72, No. 10. (October 2006), pp. 6773-6779. by P. D. Schloss, J. Handelsman posted to 16s diversity metagenomic method phylogenetics ploscb08 by djkt to the group iSEEM on 2008-07-24 18:30:20 as along with 1 person sconlan
	EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. [My Copy] International journal of systematic and evolutionary microbiology, Vol. 57, No. Pt 10. (October 2007), pp. 2259-2261. by J. Chun, J. H. Lee, Y. Jung, et al.M. Kim, S. Kim, B. K. Kim, Y. W. Lim posted to 16s method ploscb08 webtool by djkt to the group iSEEM on 2008-07-24 18:25:58 as
	Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny. [My Copy] Int J Syst Evol Microbiol, Vol. 56, No. Pt 7. (July 2006), pp. 1565-1575. by Knut Rudi, Monika Zimonja, Tormod Næs posted to 16s method phylogenetics by djkt to the group iSEEM on 2008-07-24 18:24:33 as along with 1 person Bevan_Weir
	FastGroup: a program to dereplicate libraries of 16S rDNA sequences. [My Copy] BMC bioinformatics, Vol. 2 (2001) by V. Seguritan, F. Rohwer posted to 16s alignment method ploscb08 by djkt to the group iSEEM on 2008-07-24 18:23:05 as
	NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W394-399. by T. Z. Desantis, P. Hugenholtz, K. Keller, et al.E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, G. L. Andersen posted to 16s alignment method ploscb08 webtool by djkt to the group iSEEM on 2008-07-24 18:20:03 as along with 5 people sim82 esyoun jmeppley nghoffma mcox
	An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) [My Copy] PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566. by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen posted to 16s alignment method phylogenetics ploscb08 by djkt to the group iSEEM on 2008-07-24 18:14:38 as along with 7 people and 3 groups Katje AaronDarling skembel sriesenfeld druvus vaulot skato_toyaku microbiology_nijmegen Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. [My Copy] Nucleic acids research, Vol. 35, No. 21. (18 December 2007), pp. 7188-7196. by Elmar Pruesse, Christian Quast, Katrin Knittel, et al.Bernhard M. Fuchs, Wolfgang Ludwig, Jörg Peplies, Frank Oliver O. Glöckner posted to 16s database ploscb08 by djkt to the group iSEEM on 2008-07-24 18:10:45 as along with 1 person l00cas
	Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. [My Copy] Applied and environmental microbiology, Vol. 72, No. 7. (July 2006), pp. 5069-5072. by T. Z. DeSantis, P. Hugenholtz, N. Larsen, et al.M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen posted to 16s database ploscb08 webtool by djkt to the group iSEEM on 2008-07-24 18:08:12 as along with 3 people esyoun idoerg mcox
	Microbial population structures in the deep marine biosphere. [My Copy] Science (New York, N.Y.), Vol. 318, No. 5847. (5 October 2007), pp. 97-100. by Julie A. Huber, David B. Mark Welch, Hilary G. Morrison, et al.Susan M. Huse, Phillip R. Neal, David A. Butterfield, Mitchell L. Sogin posted to 16s biogeography diversity empirical by djkt to the group iSEEM on 2008-07-24 17:45:08 as along with 8 people and 2 groups inquil madhadron mblwhoi stajich kinestetika mellabee Fabnot hpaces microbiology_nijmegen Papers recommended by the Roscoff Plankton Group
	Viral Population Estimation Using Pyrosequencing [My Copy] posted to 16s diversity metagenomic method ploscb08 popgen sequencing virus by djkt to the group iSEEM on 2008-07-24 17:37:55 as
	Evolution of Mammals and Their Gut Microbes [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1647-1651. by Ruth E. Ley, Micah Hamady, Catherine Lozupone, et al.Peter J. Turnbaugh, Rob R. Ramey, Stephen J. Bircher, Michael L. Schlegel, Tammy A. Tucker, Mark D. Schrenzel, Rob Knight, Jeffrey I. Gordon posted to 16s empirical evolution mammals ploscb08 by djkt to the group iSEEM on 2008-07-24 01:31:19 as along with 11 people and 1 group sameersoi pavitra treangen skembel krausedo Zephyrus dinnes dchughes lp2 jlgreen qwermish Green Lab
	A diversity profile of the human skin microbiota [My Copy] Genome Research, Vol. 18, No. 7. (23 July 2008), pp. 1043-1050. by Elizabeth A. Grice, Heidi H. Kong, Gabriel Renaud, et al.Alice C. Young, Gerard G. Bouffard, Robert W. Blakesley, Tyra G. Wolfsberg, Maria L. Turner, Julia A. Segre posted to 16s empirical human by djkt to the group iSEEM on 2008-07-24 01:30:16 as along with 4 people jenkelly aprasad caseybrown sconlan

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diversity	58
bacteria	28
phylogeny	22
bioinformatics	18
methods	18
metagenomics	17
fish	16
ecology	15
rrna	14
ploscb08	12
statistics	12
rna	11
microbial-diversity	10
clone	9
clone_libraries	9
library	9
method	9
23s	8
454	8
microarray	8
anammox	7
pcr	7
pyrosequencing	7
genome	6
pacific	6
review	6
sequencing	6
sofware	6
taxonomy	6
wga	6
environmental	5
microbial_diversity	5
phylogenetics	5
ribosome	5
sequence	5
soil	5
structure	5
clustering	4
database	4
empirical	4
human	4
jarasch	4
rpob	4
webtool	4
algorithm	3
alignment	3
arb	3
archaea	3
blast	3
card-fish	3
chile	3
chimeras	3
cultures	3
dgge	3
evolution	3
flow_cytometry	3
francisella	3
hydrazine	3
hzo	3
its	3
jettenia	3
marine	3
metagenomic	3
microbial	3
microbial_ecology	3
microbiology	3
molecular_techniques	3
ocean	3
omz	3
otu	3
population	3
probes	3
validation	3
30s	2
abundance	2
activity	2
asiatica	2
biodiversity	2
biogeography	2
bioinformatics_software	2
botulinum	2
butyricum	2
clostridium	2
corynebacteria	2
functional	2
gene	2
hmp	2
metagenome	2
microbiome	2
neurotoxin	2
next-gen_sequencing	2
nodule	2
oxygen	2
primer	2
rdna	2
salt	2
probing	1
program	1
rbfa	1
species	1

Group: iSEEM - with tag 16s [27 articles] Export

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