Group: iSEEM - with tag diversity [78 articles] Export

Recent papers posted by members of the iSEEM group with tag diversity

	Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to pyrosequencing methods diversity by skembel to the group iSEEM on 2009-09-03 20:05:56 as along with 2 people jgill jmeppley
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted to otu diversity 454 by skembel to the group iSEEM on 2009-08-21 22:29:55 as along with 7 people and 1 group halinat kinestetika jgill jonilaserson druvus orzenil danmaclean Bioinformatics
	Global patterns of speciation and diversity [My Copy] Nature, Vol. 460, No. 7253. (16 July 2009), pp. 384-387. by M. A. M. de Aguiar, M. Baranger, E. M. Baptestini, L. Kaufman, Y. Bar-Yam posted to community diversity ecology environment simulation speciation theory by djkt to the group iSEEM on 2009-07-15 19:35:21 as along with 6 people operon kinestetika sharpton jago melo_mcr dinnes
	ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences [My Copy] Nucl. Acids Res., Vol. 37, No. 10. (1 June 2009), e76. by Yijun Sun, Yunpeng Cai, Li Liu, et al.Fahong Yu, Michael L. Farrell, William Mckendree, William Farmerie posted to diversity pyrosequencing by jlgreen to the group iSEEM on 2009-06-08 02:53:33 as along with 2 people skembel esyoun
	The Red Queen and the Court Jester: Species Diversity and the Role of Biotic and Abiotic Factors Through Time [My Copy] Science, Vol. 323, No. 5915. (6 February 2009), pp. 728-732. by Michael J. Benton posted to diversity phylogenetics by jlgreen to the group iSEEM on 2009-05-14 18:58:16 as along with 4 people kinestetika ryevans anphony kshundyak
	Polymorphism Data Can Reveal the Origin of Species Abundance Statistics [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (24 April 2009), e1000359. by Yosef E. Maruvka, Nadav M. Shnerb posted to diversity popgen species_abundance by djkt to the group iSEEM on 2009-04-24 23:26:24 as along with 1 person jmeppley
	Supplemental programs for enhanced recovery of data from the DOTUR application [My Copy] Journal of Microbiological Methods, Vol. 75, No. 3. (December 2008), pp. 572-575. by S. Morales, T. Cosart, J. Johnson, W. Holben posted to diversity dotur rrna by jonathaneisen to the group iSEEM on 2009-03-02 18:53:29 as
	The last word: books as a statistical metaphor for microbial communities. [My Copy] Annual review of microbiology, Vol. 61 (2007), pp. 23-34. by P. D. Schloss, J. Handelsman posted to diversity microbial by skembel to the group iSEEM on 2009-02-20 23:01:10 as along with 1 person madhadron
	Clonal diversity of Streptococcus mitis biovar 1 isolates from the oral cavity of human neonates. [My Copy] Clinical and diagnostic laboratory immunology, Vol. 3, No. 5. (September 1996), pp. 517-522. by S. Fitzsimmons, M. Evans, C. Pearce, et al.M. J. Sheridan, R. Wientzen, G. Bowden, M. F. Cole posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 22:31:19 as
	Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history [My Copy] Molecular Ecology, Vol. 16, No. 10. (May 2007), pp. 2091-2102. by Jean-Luc Legras, Didier Merdinoglu, Jean-Marie Cornuet, Francis Karst posted to diversity human microbiome popgen symbiosis yeast by djkt to the group iSEEM on 2009-01-20 22:02:12 as along with 1 person dbensasson
	Population diversity and dynamics of Streptococcus mitis, Streptococcus oralis, and Streptococcus infantis in the upper respiratory tracts of adults, determined by a nonculture strategy. [My Copy] Infection and immunity, Vol. 76, No. 5. (May 2008), pp. 1889-1896. by M. Bek-Thomsen, H. Tettelin, I. Hance, K. E. Nelson, M. Kilian posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 22:01:01 as
	Molecular analysis of human oral microbiota [My Copy] Journal of Periodontal Research, Vol. 40, No. 3. (June 2005), pp. 277-285. by Mitsuo Sakamoto, Makoto Umeda, Yoshimi Benno posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 22:00:11 as
	Survey of oral microbial diversity using PCR-based denaturing gradient gel electrophoresis. [My Copy] Journal of dental research, Vol. 84, No. 6. (June 2005), pp. 559-564. by Y. Li, C. Y. Ku, J. Xu, D. Saxena, P. W. Caufield posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 21:59:18 as
	It's all relative: ranking the diversity of aquatic bacterial communities. [My Copy] Environmental microbiology (14 July 2008) by Allison K K. Shaw, Aaron L L. Halpern, Karen Beeson, Bao Tran, J Craig C. Venter, Jennifer B H B. Martiny posted to diversity metagenomics by skembel to the group iSEEM on 2009-01-09 01:06:33 as along with 3 people idoerg liucun skato_toyaku
	Diversity as a concept and its measurement [My Copy] Journal of the American Statistical Association, Vol. 77, No. 379. (1982), pp. 548-561. by G. P. Patil, C. Taillie posted to biogeography diversity ecology review statistics by jladau to the group iSEEM on 2008-12-14 21:37:38 as along with 2 people aceting adgrativol
	Microbial diversity in the deep sea and the underexplored "rare biosphere". [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 32. (8 August 2006), pp. 12115-12120. by Mitchell L. Sogin, Hilary G. Morrison, Julie A. Huber, et al.David Mark Welch, Susan M. Huse, Phillip R. Neal, Jesus M. Arrieta, Gerhard J. Herndl posted to 454 diversity pyrosequencing by skembel to the group iSEEM on 2008-11-24 18:40:48 as along with 12 people and 1 group hwright jbhiatt skato_toyaku jmeppley balicea madhadron rabu bluto xingxu kinestetika mcox Olaf_Ilzins microbiology_nijmegen
	A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library [My Copy] Nucl. Acids Res. (5 August 2008), gkn496. by Chaysavanh Manichanh, Charles E. Chapple, Lionel Frangeul, Karine Gloux, Roderic Guigo, Joel Dore posted to diversity metagenomics methods by skembel to the group iSEEM on 2008-11-19 19:17:16 as along with 3 people bluto sconlan druvus
	Measurement of biological information with applications from genes to landscapes [My Copy] Molecular Ecology, Vol. 15, No. 10. (September 2006), pp. 2857-2869. by William B. Sherwin, Franck Jabot, Rebecca Rush, Maurizio Rossetto posted to diversity entropy by skembel to the group iSEEM on 2008-11-18 23:05:40 as along with 1 person liucun
	Diversity and dissimilarity coefficients: A unified approach [My Copy] Theoretical Population Biology, Vol. 21, No. 1. (February 1982), pp. 24-43. by C. Rao posted to diversity entropy functionaldiversity phylodiversity by skembel to the group iSEEM on 2008-11-18 20:48:54 as along with 1 person liucun
	Bridging the gap between ecological diversity indices and measures of biodiversity with Shannon's entropy: comment to Izsák and Papp [My Copy] Ecological Modelling, Vol. 152, No. 1. (15 June 2002), pp. 1-3. by C. Ricotta posted to diversity entropy phylodiversity by skembel to the group iSEEM on 2008-11-18 20:48:08 as along with 1 person liucun
	Global patterns in bacterial diversity [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 27. (3 July 2007), pp. 11436-11440. by Catherine A. Lozupone, Rob Knight posted to diversity microbial by skembel to the group iSEEM on 2008-11-10 01:33:42 as along with 1 person jonathaneisen
	MEGAN analysis of metagenomic data [My Copy] Genome Research, Vol. 17, No. 3., 377. by Huson posted to diversity otu phylogenetics by djkt to the group iSEEM on 2008-09-17 19:00:57 as
	Metagenomics reveals our incomplete knowledge of global diversity. [My Copy] Bioinformatics (Oxford, England) (13 July 2008) by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames posted to diversity metagenomic by djkt to the group iSEEM on 2008-09-05 19:09:34 as along with 10 people and 2 groups hwright Thaverkamp jmeppley microrita skembel druvus vaulot reyez bootsy nuin Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks [My Copy] Genome Research by Shannon posted to diversity networks ploscb08 by jlgreen to the group iSEEM on 2008-08-12 20:19:42 as
	Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil [My Copy] Science, Vol. 309, No. 5739. (26 August 2005), pp. 1387-1390. by Jason Gans, Murray Wolinsky, John Dunbar posted to diversity empirical kinetics by jlgreen to the group iSEEM on 2008-08-12 07:08:08 as along with 4 people knaseanka jmeppley paleorthid djkt
	Toward a census of bacteria in soil. [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (21 July 2006) by P. D. Schloss, J. Handelsman posted to 16s diversity estimator ploscb08 by jlgreen to the group iSEEM on 2008-08-08 23:52:21 as along with 4 people and 2 groups anphony azazello fornstar mjetten anammox microbiology_nijmegen
	Status of the Microbial Census [My Copy] Microbiol. Mol. Biol. Rev., Vol. 68, No. 4. (1 December 2004), pp. 686-691. by Patrick D. Schloss, Jo Handelsman posted to diversity method ploscb08 rarefaction review by jlgreen to the group iSEEM on 2008-08-08 23:51:10 as along with 3 people anphony mcox Olaf_Ilzins
	Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions [My Copy] ISME J, Vol. 2, No. 8. (May 2008), pp. 865-886. by Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, et al.Jose C. Alba, Elena Ivars-Martinez, Matthew R. Henn, Emmanuel Talla, Purificacion Lopez-Garcia posted to diversity metagenomic ploscb08 by jlgreen to the group iSEEM on 2008-08-08 01:16:06 as along with 2 people and 1 group anphony djkt Green Lab
	Spatial and Temporal Patterns in the Microbial Diversity of a Meromictic Soda Lake in Washington State [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 15. (1 August 2008), pp. 4877-4888. by Pedro A. Dimitriu, Holly C. Pinkart, Brent M. Peyton, Melanie R. Mormile posted to dgge diversity by jlgreen to the group iSEEM on 2008-08-07 22:53:55 as along with 1 group Green Lab
	Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques [My Copy] Nature Reviews Microbiology, Vol. 6, No. 5., pp. 339-348. by Rudolf Amann, Bernhard M. Fuchs posted to 16s abundance diversity fish review by jlgreen to the group iSEEM on 2008-08-05 23:33:12 as along with 5 people and 4 groups hwright Katje vrich vaulot Huub_odc microbiology_nijmegen Microbial-Ecology Papers recommended by the Roscoff Plankton Group Green Lab
	The rational exploration of microbial diversity [My Copy] ISME (2008) by Christopher Quince, Thomas P. Curtis, William T. Sloan posted to 16s diversity estimator metagenomic parametric ploscb08 by jlgreen to the group iSEEM on 2008-08-04 20:30:02 as along with 2 people and 1 group anphony djkt Green Lab
	Beta Diversity in Spatially Implicit Neutral Models: A New Way to Assess Species Migration [My Copy] American Naturalist (2008) by François Munoz, Pierre Couteron, B. R. Ramesh1 posted to beta diversity neutral by jlgreen to the group iSEEM on 2008-08-04 20:20:06 as along with 1 group Green Lab
	Ecological consequences of genetic diversity [My Copy] Ecology Letters, Vol. 11, No. 6. (June 2008), pp. 609-623. by Hughes, A. Randall, Inouye, et al.D. Brian, Johnson, T. J. Marc, Underwood, Nora, Vellend, Mark posted to diversity genetic by jlgreen to the group iSEEM on 2008-08-04 20:06:45 as along with 2 people and 1 group anphony jbsaltz Green Lab
	Less lineages more trait variation: phylogenetically clustered plant communities are functionally more diverse [My Copy] Ecology Letters, Vol. 11, No. 8. (August 2008), pp. 809-819. by Prinzing, Andreas, Reiffers, et al. Reineke, Braakhekke, G. Wim, Hennekens, M. Stephan, Tackenberg, Oliver, Ozinga, A. Wim, Schaminee, H. J. Joop, Van Groenendael, M. Jan posted to assembly community diversity functional phylogenetics by jlgreen to the group iSEEM on 2008-08-04 20:03:09 as along with 1 person and 1 group anphony Green Lab
	CONSEQUENCES OF DOMINANCE: A REVIEW OF EVENNESS EFFECTS ON LOCAL AND REGIONAL ECOSYSTEM PROCESSES [My Copy] Ecology (2008) by Helmut Hillebrand, Danuta M. Bennett, Marc W. Cadotte posted to diversity ecology by jlgreen to the group iSEEM on 2008-08-04 19:59:15 as along with 1 person and 1 group danutter Green Lab
	AN INCIDENCE-BASED RICHNESS ESTIMATOR FOR QUADRATS SAMPLED WITHOUT REPLACEMENT [My Copy] Ecology (2008) by Tsung-Jen Shen, Fangliang He posted to diversity estimator ploscb08 by jlgreen to the group iSEEM on 2008-08-04 19:38:58 as along with 1 group Green Lab
	ON THE RELATIONSHIP BETWEEN REGIONAL AND LOCAL SPECIES RICHNESS: A TEST OF SATURATION THEORY [My Copy] Ecology (2008) by Brian M. Starzomski1, Raenelle L. Parker, Diane S. Srivastava posted to diversity by jlgreen to the group iSEEM on 2008-08-04 19:35:14 as along with 1 group Green Lab
	Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness [My Copy] ISME J, Vol. 2, No. 6. (28 February 2008), pp. 642-655. by Liyou Wu, Xueduan Liu, Matthew W. Fields, et al.Dorothea K. Thompson, Christopher E. Bagwell, James M. Tiedje, Terry C. Hazen, Jizhong Zhou posted to diversity microarray ploscb08 by jlgreen to the group iSEEM on 2008-08-04 17:18:34 as along with 1 group Green Lab
	Proteorhodopsins: an array of physiological roles? [My Copy] Nature Reviews Microbiology, Vol. 6, No. 6. (13 May 2008), pp. 488-494. by Jed A. Fuhrman, Michael S. Schwalbach, Ulrich Stingl posted to diversity proteorhodopsin review trait by jlgreen to the group iSEEM on 2008-07-26 00:54:11 as along with 1 group Green Lab
	The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. [My Copy] The ISME journal (8 May 2008) by Stephen J J. Bent, Larry J J. Forney posted to clone diversity fingerprinting pcr ploscb08 review by jlgreen to the group iSEEM on 2008-07-26 00:50:56 as along with 7 people and 3 groups lorenalizarraga80 microrita druvus vaulot jdelcampo djkt skembel Papers recommended by the Roscoff Plankton Group Microbial-Ecology Green Lab
	Fungal metabolism: Dissecting catalysis [My Copy] Nature Reviews Microbiology, Vol. 6, No. 6. (13 May 2008), pp. 414-415. by Rachel Smallridge posted to diversity endemism by jlgreen to the group iSEEM on 2008-07-26 00:36:26 as along with 1 group Green Lab
	Ibis T5000: a universal biosensor approach for microbiology [My Copy] Nature Reviews Microbiology, Vol. 6, No. 7. (03 June 2008), pp. 553-558. by David J. Ecker, Rangarajan Sampath, Christian Massire, et al.Lawrence B. Blyn, Thomas A. Hall, Mark W. Eshoo, Steven A. Hofstadler posted to diversity technology by jlgreen to the group iSEEM on 2008-07-26 00:35:03 as along with 1 group Green Lab
	High local and global diversity of Flavobacteria in marine plankton [My Copy] Environmental Microbiology, Vol. 9, No. 5. (May 2007), pp. 1253-1266. by Alonso, Cecilia, Warnecke, et al. Falk, Amann, Rudolf, Pernthaler, Jakob posted to 16s clone-library diversity by jlgreen to the group iSEEM on 2008-07-25 23:44:16 as along with 1 person and 2 groups beatrizfernandez Microbial-Ecology Green Lab
	Abundance and diversity of microbial life in ocean crust [My Copy] Nature, Vol. 453, No. 7195., pp. 653-656. by Cara M. Santelli, Beth N. Orcutt, Erin Banning, et al.Wolfgang Bach, Craig L. Moyer, Mitchell L. Sogin, Hubert Staudigel, Katrina J. Edwards posted to diversity microscopy qpcr by jlgreen to the group iSEEM on 2008-07-25 23:42:51 as along with 1 person and 3 groups vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group Green Lab
	Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments [My Copy] Environmental Microbiology, Vol. 10, No. 4. (April 2008), pp. 1039-1056. by Sharma, K. Adrian, Zhaxybayeva, et al. Olga, Papke, R. Thane, Doolittle, W. Ford posted to diversity gos ocean phylogenetics ploscb08 rhodopsin by jlgreen to the group iSEEM on 2008-07-25 23:34:52 as along with 1 group Green Lab
	Molecular diversity and ecology of microbial plankton [My Copy] Nature, Vol. 437, No. 7057. (14 September 2005), pp. 343-348. by Stephen J. Giovannoni, Ulrich Stingl posted to diversity ocean review by jlgreen to the group iSEEM on 2008-07-25 23:17:46 as along with 6 people and 3 groups hwright Stenuite jdelcampo beatrizfernandez vrich jmeppley African_Lakes_Limnology Microbial-Ecology Green Lab
	Comparative Metagenomics of Microbial Communities [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to diversity egts metagenomic ploscb08 by jlgreen to the group iSEEM on 2008-07-25 22:59:38 as along with 18 people and 4 groups hwright skembel Thaverkamp Scis0000002 idoerg jbhiatt kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten djkt Microbial-Ecology anammox microbiology_nijmegen Green Lab
	Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior [My Copy] Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503. by Edward F. Delong, Christina M. Preston, Tracy Mincer, et al.Virginia Rich, Steven J. Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B. Sullivan, Robert Edwards, Beltran R. Brito, Sallie W. Chisholm, David M. Karl posted to diversity empirical metagenomic ocean ploscb08 traits by jlgreen to the group iSEEM on 2008-07-25 22:57:43 as along with 15 people and 4 groups hwright anphony Thaverkamp skembel eoghanharr dayjm jmeppley michC bluto jdelcampo beatrizfernandez mjetten mcox vrich djkt Savage Lab, UCLA Microbial-Ecology microbiology_nijmegen Green Lab
	Spatial scaling of microbial biodiversity [My Copy] Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 501-507. by Jessica Green, Brendan J. Bohannan posted to biogeography diversity ploscb08 review by jlgreen to the group iSEEM on 2008-07-25 22:45:27 as along with 7 people and 2 groups fornstar liucun jmeppley cmm mcox vrich djkt FAB-lab Green Lab
	From the Cover: A latitudinal diversity gradient in planktonic marine bacteria [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778. by Jed A. Fuhrman, Joshua A. Steele, Ian Hewson, et al.Michael S. Schwalbach, Mark V. Brown, Jessica L. Green, James H. Brown posted to arisa biogeography diversity ocean ploscb08 by jlgreen to the group iSEEM on 2008-07-25 22:42:18 as along with 6 people and 3 groups hwright paulm skembel skato_toyaku vaulot djkt Green Lab Microbial-Ecology Papers recommended by the Roscoff Plankton Group

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ecology	162
plant	111
evolution	92
microeukaryotes	77
phylogeny	74
review	74
marine	67
community	64
biogeography	63
islands	63
metagenomics	61
16s	58
microbial-ecology	56
genetic	51
theory	51
methods	49
ploscb08	49
population-genetics	46
microbial	38
conservation	37
species	35
bacteria	31
gradients	27
statistics	27
measurement	26
model	26
fish	25
genetics	25
pollinator	25
inpro	24
microbe	24
elevation	22
hnf	22
mimo	22
multiuser	21
phylogenetics	20
freshwater	18
functional	18
genome	18
genomics	18
soil	18
biodiversity	17
method	17
microarray	17
morphology	17
selection	17
culture	16
metagenomic	16
rapd	16
spatial	16
allozyme	15
bacterial	15
bioinformatics	15
canary	15
habitat	15
niche	15
prokaryotes	15
richness	15
search	15
stability	15
cultural	14
disturbance	14
population	14
ranking	14
scale	14
birds	13
microbes	13
microbiology	13
resilience	13
climate	12
crisis	12
ea	12
ecosystem	12
mediterranean	12
microsatellite	12
of	12
research	12
simulation	12
sustainability	12
adaptive-radiation	11
aflp	11
archaea	11
area	11
distribution	11
ecosystems	11
growth	11
human	11
institutions	11
library	11
measures	11
metagenome	11
mref	11
wireless	11
biology	10
clone	10
communication	10
education	10
fungi	10
heterogeneity	10
rna	10

Group: iSEEM - with tag diversity [78 articles] Export

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