Group: iSEEM - with tag evolution [35 articles] Export

Recent papers posted by members of the iSEEM group with tag evolution

	Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations [My Copy] Genome Biology, Vol. 10, No. 10. (22 October 2009), R118. by Tom Conrad, Andrew Joyce, M. Kenyon Applebee, et al.Christian Barrett, Bin Xie, Yuan Gao, Bernhard Palsson posted to mutation evolution bacteria by djkt to the group iSEEM on 2009-11-03 01:39:46 as along with 4 people venancio nzm operon druvus
	Genome evolution and adaptation in a long-term experiment with Escherichia coli [My Copy] Nature, Vol. 461, No. 7268. (18 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong S. Yu, Sung H. Yoon, et al.Haeyoung Jeong, Tae K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to selection evolution bacteria by djkt to the group iSEEM on 2009-10-21 18:18:30 as along with 24 people and 3 groups jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm jjray treangen lp2 codonusage operon diamantis michaelbarton druvus DrRichardBadge richardfranzese Pedro Martinez EvoDevo lab Barcelona Journal picks BergmanLab
	Temporal Constraints on the Incorporation of Regulatory Mutants in Evolutionary Pathways [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2455-2462. by Kyle M. Brown, Mark A. DePristo, Daniel M. Weinreich, Daniel L. Hartl posted to selection proteins evolution enzymes bacteria by djkt to the group iSEEM on 2009-10-12 17:58:59 as along with 1 person JustinCrocker
	Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora [My Copy] Science, Vol. 325, No. 5944. (28 August 2009), pp. 1128-1131. by Morten O. A. Sommer, Gautam Dantas, George M. Church posted to pathogen microbiome microbes metagenomics evolution disease by djkt to the group iSEEM on 2009-09-03 18:03:10 as along with 4 people jgill pkm chriswillmott rpatward
	On the Accessibility of Adaptive Phenotypes of a Bacterial Metabolic Network [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000472. by Wilfred Ndifon, Joshua B. Plotkin, Jonathan Dushoff posted to sysbio evolution bacteria by djkt to the group iSEEM on 2009-08-21 16:34:18 as along with 2 people zwang biomcgary
	Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes? [My Copy] Genetics, Vol. 182, No. 4. (1 August 2009), pp. 1365-1375. by Weilong Hao, G. Brian Golding posted to gene-transfer evolution acceleration by djkt to the group iSEEM on 2009-08-21 01:13:05 as along with 2 people biomcgary operon
	Evidence for an early prokaryotic endosymbiosis. [My Copy] Nature, Vol. 460, No. 7258. (20 August 2009), pp. 967-971. by James A. Lake posted to symbiosis evolution bacteria by djkt to the group iSEEM on 2009-08-19 20:22:06 as along with 5 people cmzmasek cambray robfsouza neils behindtherabbit
	Evolutionary flexibility of protein complexes [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 155. by Michael Seidl, Jorg Schultz posted to duplication evolution indel proteins by djkt to the group iSEEM on 2009-07-27 18:06:39 as along with 1 person phoenixzxl
	Deletional Bias across the Three Domains of Life [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (10 July 2009), pp. 145-152. by Chih-Horng Kuo, Howard Ochman posted to chromosome drift evolution indel by djkt to the group iSEEM on 2009-07-14 20:53:46 as along with 1 person operon
	Adaptive prediction of environmental changes by microorganisms [My Copy] Nature, Vol. 460, No. 7252. (17 June 2009), pp. 220-224. by Amir Mitchell, Gal H. Romano, Bella Groisman, et al.Avihu Yona, Erez Dekel, Martin Kupiec, Orna Dahan, Yitzhak Pilpel posted to environment evolution microbes selection by djkt to the group iSEEM on 2009-07-08 19:46:07 as along with 8 people yyfwuhan kinestetika biomcgary sriesenfeld timotay izuleta jjray michaelbarton
	A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R65. by Diego Cortez, Patrick Forterre, Simonetta Gribaldo posted to evolution gene-transfer repeats virus by djkt to the group iSEEM on 2009-07-02 01:08:55 as along with 2 people barriot neils
	INDELible: A Flexible Simulator of Biological Sequence Evolution [My Copy] Mol Biol Evol, Vol. 26, No. 8. (1 August 2009), pp. 1879-1888. by William Fletcher, Ziheng Yang posted to evolution indel simulation by djkt to the group iSEEM on 2009-06-09 19:34:20 as along with 6 people and 1 group friendpine zwang ppgardne druvus nuin gjuggler Journal picks
	Genome-Wide Functional Divergence after the Symbiosis of Proteobacteria with Insects Unraveled through a Novel Computational Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000344. by Christina Toft, Tom A. Williams, Mario A. Fares posted to evolution microbes microbiome symbiosis by djkt to the group iSEEM on 2009-04-03 16:44:52 as along with 2 people mpvazquez bourby
	Rapid Pathway Evolution Facilitated by Horizontal Gene Transfers across Prokaryotic Lineages [My Copy] PLoS Genet, Vol. 5, No. 3. (6 March 2009), e1000402. by Wataru Iwasaki, Toshihisa Takagi posted to evolution gene-transfer microbes sysbio by djkt to the group iSEEM on 2009-03-06 19:37:03 as along with 2 people fishinwind trfield
	Estimating the size of the bacterial pan-genome. [My Copy] Trends in genetics : TIG, Vol. 25, No. 3. (23 March 2009), pp. 107-110. by Pascal Lapierre, J. Peter Gogarten posted to evolution genome microbes proteins by djkt to the group iSEEM on 2009-03-05 16:26:54 as along with 4 people treangen azazello skembel nyyu
	A hierarchical model for evolution of 23S ribosomal RNA [My Copy] Nature, Vol. 457, No. 7232. (19 February 2009), pp. 977-980. by Konstantin Bokov, Sergey V. Steinberg posted to evolution rna by djkt to the group iSEEM on 2009-02-18 20:57:22 as along with 7 people and 1 group nurban svozil reyez bratwurst mhamada phoenixzxl kinestetika microbiology_nijmegen
	Inferring genomic flux in bacteria [My Copy] Genome Research, Vol. 19, 306. by Xavier Didelot, Aaron Darling, Daniel Falush posted to duplication evolution indel microbes by djkt to the group iSEEM on 2009-02-10 00:38:49 as
	Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000344. by Marie Touchon, Claire Hoede, Olivier Tenaillon, et al.Valérie Barbe, Simon Baeriswyl, Philippe Bidet, Edouard Bingen, Stéphane Bonacorsi, Christiane Bouchier, Odile Bouvet, Alexandra Calteau, Hélène Chiapello, Olivier Clermont, Stéphane Cruveiller, Antoine Danchin, Médéric Diard, Carole Dossat, Meriem E. Karoui, Eric Frapy, Louis Garry, Jean M. Ghigo, Anne M. Gilles, James Johnson, Chantal Le Bouguénec, Mathilde Lescat, Sophie Mangenot, Vanessa Martinez-Jéhanne, Ivan Matic, Xavier Nassif, Sophie Oztas, Marie A. Petit, Christophe Pichon, Zoé Rouy, Claude S. Ruf, Dominique Schneider, Jérôme Tourret, Benoit Vacherie, David Vallenet, Claudine Médigue, Eduardo P. C. Rocha, Erick Denamur posted to chromosome duplication evolution microbes selection by djkt to the group iSEEM on 2009-02-05 17:55:51 as along with 3 people calderonv katholt jjray
	Protein kinase R reveals an evolutionary model for defeating viral mimicry [My Copy] Nature (30 November 2008) by Nels C. Elde, Stephanie J. Child, Adam P. Geballe, Harmit S. Malik posted to evolution microbes pathogen virus by djkt to the group iSEEM on 2009-01-21 20:48:38 as along with 2 people kieran101 neils
	The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria [My Copy] Science, Vol. 323, No. 5912. (16 January 2009), pp. 379-382. by Nancy A. Moran, Heather J. Mclaughlin, Rotem Sorek posted to evolution indel microbes mutation symbiosis by djkt to the group iSEEM on 2009-01-17 00:44:00 as along with 7 people and 1 group kinestetika JeremyZucker emptyhb abizar behindtherabbit bpb pansapiens MetabolicModeling
	Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics [My Copy] BMC Evolutionary Biology, Vol. 8, No. 1. (03 December 2008), 327. by J. Gregory Caporaso, Sandra Smit, Brett Easton, Lawrence Hunter, Gavin Huttley, Rob Knight posted to evolution phylogenetics proteins by djkt to the group iSEEM on 2009-01-13 23:21:53 as along with 4 people dfdong mgomes qluo sjcockell
	A major clade of prokaryotes with ancient adaptations to life on land [My Copy] Mol Biol Evol (10 November 2008), msn247. by Fabia U. Battistuzzi, Blair S. Hedges posted to environment evolution microbes by djkt to the group iSEEM on 2009-01-13 17:23:51 as along with 2 people jmeppley skato_toyaku
	Parallel adaptations to high temperatures in the Archaean eon. [My Copy] Nature, Vol. 456, No. 7224. (18 December 2008), pp. 942-945. by B. Boussau, S. Blanquart, A. Necsulea, N. Lartillot, M. Gouy posted to evolution phylogenetics by djkt to the group iSEEM on 2008-12-17 22:38:36 as along with 3 people chica idoerg cmzmasek
	High Functional Diversity in <named-content xmlns:xlink="http://www.w3.org/1999/xlink" content-type="genus-species" xlink:type="simple">Mycobacterium tuberculosis</named-content> Driven by Genetic Drift and Human Demography [My Copy] PLoS Biol, Vol. 6, No. 12. (16 December 2008), e311. by Ruth Hershberg, Mikhail Lipatov, Peter M. Small, et al.Hadar Sheffer, Stefan Niemann, Susanne Homolka, Jared C. Roach, Kristin Kremer, Dmitri A. Petrov, Marcus W. Feldman, Sebastien Gagneux posted to evolution human microbes popgen by djkt to the group iSEEM on 2008-12-16 19:35:28 as along with 7 people katholt sandfire xingxu skembel jlgreen druvus vplagnol
	Rules of Engagement: Interspecies Interactions that Regulate Microbial Communities [My Copy] Annual Review of Microbiology, Vol. 62, No. 1. (2008), pp. 375-401. by Ainslie E. F. Little, Courtney J. Robinson, Brook S. Peterson, Kenneth F. Raffa, Jo Handelsman posted to biogeography community ecology evolution review by jladau to the group iSEEM on 2008-11-19 20:22:59 as along with 1 person skembel
	Evolutionary Modeling of Rate Shifts Reveals Specificity Determinants in HIV-1 Subtypes [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000214. by Osnat Penn, Adi Stern, Nimrod D. Rubinstein, et al.Julien Dutheil, Eran Bacharach, Nicolas Galtier, Tal Pupko posted to acceleration evolution hiv by djkt to the group iSEEM on 2008-11-08 19:06:29 as along with 1 person skembel
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to evolution indel phylogenetics by djkt to the group iSEEM on 2008-11-06 18:14:53 as along with 11 people BioNica mhamada treangen pradiptaray zwang nuin timflutre druvus aprasad gjuggler emptyhb
	Phylogenetic distances are encoded in networks of interacting pathways [My Copy] Bioinformatics (26 September 2008), btn503. by Aurelien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck posted to evolution phylogenetics sysbio by djkt to the group iSEEM on 2008-11-05 16:07:48 as along with 4 people behindtherabbit markchen nuin renatomilani
	Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought [My Copy] Mol Biol Evol, Vol. 25, No. 11. (1 November 2008), pp. 2251-2254. by Uwe K. Simon, Michael Weiss posted to eukaryote evolution phylogenetics ribosome rna variation by djkt to the group iSEEM on 2008-10-16 18:35:23 as
	Site-Specific Evolutionary Rates in Proteins Are Better Modeled as Non-Independent and Strictly Relative [My Copy] Bioinformatics (28 July 2008), btn395. by Andrew D. Fernandes, William R. Atchley posted to evolution protein by djkt to the group iSEEM on 2008-09-29 18:04:02 as along with 1 person sunhwan
	Disentangling interactions between adaptive divergence and gene flow when ecology drives diversification [My Copy] Ecology Letters, Vol. 11, No. 6. (June 2008), pp. 624-636. by Katja Räsänen, Andrew P. Hendry posted to adaptation dispersal divergence evolution by jlgreen to the group iSEEM on 2008-08-04 20:09:12 as along with 4 people and 1 group jlin anphony skembel cellison Green Lab
	Convergence of Campylobacter Species: Implications for Bacterial Evolution [My Copy] Science, Vol. 320, No. 5873. (11 April 2008), pp. 237-239. by Samuel K. Sheppard, Noel D. McCarthy, Daniel Falush, Martin C. J. Maiden posted to bacterial evolution by jlgreen to the group iSEEM on 2008-07-27 23:38:52 as along with 5 people and 1 group pkm druvus jmeppley biomcgary dinnes Green Lab
	The Microbial Engines That Drive Earth's Biogeochemical Cycles [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1034-1039. by Paul G. Falkowski, Tom Fenchel, Edward F. Delong posted to ecology evolution review by djkt to the group iSEEM on 2008-07-24 23:22:11 as along with 6 people and 2 groups thegoose2 nurban kinestetika tharris jdelcampo fornstar microbiology_nijmegen Microbial-Ecology
	Confusing Kinships [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1031-1033. by John Bohannon posted to phylogenetics ecotype evolution review by djkt to the group iSEEM on 2008-07-24 23:19:35 as
	Evolution of Mammals and Their Gut Microbes [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1647-1651. by Ruth E. Ley, Micah Hamady, Catherine Lozupone, et al.Peter J. Turnbaugh, Rob R. Ramey, Stephen J. Bircher, Michael L. Schlegel, Tammy A. Tucker, Mark D. Schrenzel, Rob Knight, Jeffrey I. Gordon posted to 16s empirical evolution mammals ploscb08 by djkt to the group iSEEM on 2008-07-24 01:31:19 as along with 11 people and 1 group sameersoi pavitra treangen skembel krausedo Zephyrus dinnes dchughes lp2 jlgreen qwermish Green Lab

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review	630
selection	613
phylogenetics	572
genome	532
read	530
genetics	470
protein	456
genomics	427
biology	413
network	409
development	402
cooperation	389
phylogeny	380
mutation	337
model	329
language	327
human	324
structure	309
bacteria	295
bioinformatics	292
gene	275
transposon	266
drosophila	249
ecology	249
expression	249
networks	224
software	219
theory	190
cognition	188
adaptation	184
rna	179
complexity	178
elegans	167
celegans	166
c_elegans	164
nematode	164
caenorhabditis_elegans	162
wormbase	162
duplication	160
yeast	155
master	154
transcription	148
article	147
cancer	147
immune	146
simulation	144
dna	139
culture	137
enzyme	136
regulation	136
epigenetics	135
molecular	134
mirna	131
microrna	130
statistics	130
sequence	129
social	129
evolutionary-genomics	127
genetic	119
population	119
epidemiology	118
modeling	116
evolvability	115
behavior	113
proteins	111
primates	108
alignment	107
recombination	107
sex	107
virus	106
altruism	104
gene-expression	104
dynamics	103
domain	101
disease	100
metabolism	97
language_evolution	96
immunology	95
speciation	94
conservation	92
psychology	92
variation	92
diversity	91
intron	91
mind	91
galaxies	86
history	85
game	84
indel	84
modularity	84
plant	84
coevolution	82
fungi	82
genes	82
interaction	81
modelling	81
algorithm	80
methods	80
reduction	78
comparative_genomics	77

Group: iSEEM - with tag evolution [35 articles] Export

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