Group: iSEEM - with tag microbes [48 articles] Export

Recent papers posted by members of the iSEEM group with tag microbes

	De novo computational prediction of non-coding RNA genes in prokaryotic genomes [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2897-2905. by Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu posted to rna microbes annotation by djkt to the group iSEEM on 2009-11-04 17:41:30 as along with 4 people and 1 group TRHvidsten jmcq ppgardne druvus Journal picks
	What is microbial community ecology\|[quest]\| [My Copy] The ISME Journal, Vol. 3, No. 11. (06 August 2009), pp. 1223-1230. by Allan Konopka posted to review microbes metagenomics ecology community by djkt to the group iSEEM on 2009-10-22 22:42:13 as along with 2 people pyilmaz skembel
	Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia [My Copy] Science, Vol. 326, No. 5951. (16 October 2009), pp. 422-426. by Anne E. Dekas, Rachel S. Poretsky, Victoria J. Orphan posted to microbes environment community by djkt to the group iSEEM on 2009-10-16 06:27:37 as along with 1 person ajsferreira
	Inference of Microbial Recombination Rates from Metagenomic Data [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000674. by Philip L. F. Johnson, Montgomery Slatkin posted to recombination microbes metagenomics by djkt to the group iSEEM on 2009-10-08 16:16:52 as along with 3 people druvus kinestetika maren
	Intertwined Evolutionary Histories of Marine Synechococcus and Prochlorococcus marinus [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (23 September 2009), pp. 325-339. by Olga Zhaxybayeva, W. Ford Doolittle, R. Thane Papke, J. Peter Gogarten posted to phylogenetics microbes ecology by djkt to the group iSEEM on 2009-10-01 00:13:13 as along with 1 person skembel
	Human gut microbiome adopts an alternative state following small bowel transplantation [My Copy] Proceedings of the National Academy of Sciences (17 September 2009) by Amber L. Hartman, Denver M. Lough, Dinesh K. Barupal, et al.Oliver Fiehn, Thomas Fishbein, Michael Zasloff, Jonathan A. Eisen posted to microbiome microbes community by djkt to the group iSEEM on 2009-09-22 23:32:15 as along with 2 people jgill skembel
	Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora [My Copy] Science, Vol. 325, No. 5944. (28 August 2009), pp. 1128-1131. by Morten O. A. Sommer, Gautam Dantas, George M. Church posted to pathogen microbiome microbes metagenomics evolution disease by djkt to the group iSEEM on 2009-09-03 18:03:10 as along with 5 people skembel jgill pkm chriswillmott rpatward
	Community-wide analysis of microbial genome sequence signatures [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R85. by Gregory J. Dick, Anders F. Andersson, Brett J. Baker, et al.Sheri L. Simmons, Brian C. Thomas, A. Pepper Yelton, Jillian F. Banfield posted to otu microbes metagenomics community by djkt to the group iSEEM on 2009-09-02 23:52:48 as along with 8 people and 1 group ajsferreira dakelley druvus bdessailly skembel jonilaserson neils barriot Orengo Group Journal Picks
	Local Adaptation of Bacteriophages to Their Bacterial Hosts in Soil [My Copy] Science, Vol. 325, No. 5942. (14 August 2009), 833. by Michiel Vos, Philip J. Birkett, Elizabeth Birch, Robert I. Griffiths, Angus Buckling posted to soil selection phage microbes ecology bacteria by djkt to the group iSEEM on 2009-08-14 16:06:51 as along with 3 people maren timothee-poisot michaelbarton
	Origin of an Alternative Genetic Code in the Extremely Small and GC–Rich Genome of a Bacterial Symbiont [My Copy] PLoS Genet, Vol. 5, No. 7. (17 July 2009), e1000565. by John P. Mccutcheon, Bradon R. Mcdonald, Nancy A. Moran posted to bias codon gccontent genome_size microbes by djkt to the group iSEEM on 2009-07-17 16:50:16 as
	Adaptive prediction of environmental changes by microorganisms [My Copy] Nature, Vol. 460, No. 7252. (17 June 2009), pp. 220-224. by Amir Mitchell, Gal H. Romano, Bella Groisman, et al.Avihu Yona, Erez Dekel, Martin Kupiec, Orna Dahan, Yitzhak Pilpel posted to environment evolution microbes selection by djkt to the group iSEEM on 2009-07-08 19:46:07 as along with 8 people yyfwuhan kinestetika biomcgary sriesenfeld timotay izuleta jjray michaelbarton
	<italic>Caenorhabditis elegans</italic> Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits [My Copy] PLoS Genet, Vol. 5, No. 6. (5 June 2009), e1000503. by Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, Bryanua C. Carr, Michael A. Herman posted to environment expression microbes worm by djkt to the group iSEEM on 2009-06-08 17:34:35 as along with 1 person trfield
	Topographical and Temporal Diversity of the Human Skin Microbiome [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1190-1192. by Elizabeth A. Grice, Heidi H. Kong, Sean Conlan, et al.Clayton B. Deming, Joie Davis, Alice C. Young, Nisc Comparative Sequencing Program, Gerard G. Bouffard, Robert W. Blakesley, Patrick R. Murray, Eric D. Green, Maria L. Turner, Julia A. Segre posted to empirical human metagenomics microbes microbiome skin by djkt to the group iSEEM on 2009-05-30 18:24:04 as along with 7 people roys absterga mishibas skembel ematsen t08681mn sconlan
	Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms [My Copy] Bioinformatics (8 April 2009), btp241. by Triinu Koressaar, Kai Joers, Maido Remm posted to microbes repeats by djkt to the group iSEEM on 2009-05-14 18:19:58 as along with 2 people nuin druvus
	Microbial community structure and its functional implications [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 193-199. by Jed A. Fuhrman posted to community microbes review by djkt to the group iSEEM on 2009-05-13 23:03:45 as along with 4 people hwright jmeppley Thaverkamp skembel
	The microbial ocean from genomes to biomes [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 200-206. by Edward F. Delong posted to ecology metagenomics microbes review by djkt to the group iSEEM on 2009-05-13 23:02:23 as along with 6 people and 1 group roys jmeppley stajich Thaverkamp neils skembel Mycology
	Viruses manipulate the marine environment [My Copy] Nature, Vol. 459, No. 7244. (13 May 2009), pp. 207-212. by Forest Rohwer, Rebecca V. Thurber posted to microbes review virus by djkt to the group iSEEM on 2009-05-13 23:01:15 as along with 4 people hwright tomhebbron skembel Thaverkamp
	Metatranscriptomics reveals unique microbial small RNAs in the ocean\|[rsquo]\|s water column [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 266-269. by Yanmei Shi, Gene W. Tyson, Edward F. DeLong posted to expression metagenomics microbes rna by djkt to the group iSEEM on 2009-05-13 23:00:14 as along with 13 people and 3 groups tonamswish kinestetika gdb michaelbarton samgj vaulot Katje absterga jmeppley Thaverkamp pengchy skembel jbhiatt Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen
	The convergence of carbohydrate active gene repertoires in human gut microbes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (30 September 2008), pp. 15076-15081. by Catherine A. Lozupone, Micah Hamady, Brandi L. Cantarel, et al.Pedro M. Coutinho, Bernard Henrissat, Jeffrey I. Gordon, Rob Knight posted to human metabolic metagenomics microbes microbiome otu by djkt to the group iSEEM on 2009-04-22 19:27:33 as along with 5 people cmzmasek sharpton Thaverkamp skembel sg45653
	Genome-Wide Functional Divergence after the Symbiosis of Proteobacteria with Insects Unraveled through a Novel Computational Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000344. by Christina Toft, Tom A. Williams, Mario A. Fares posted to evolution microbes microbiome symbiosis by djkt to the group iSEEM on 2009-04-03 16:44:52 as along with 2 people mpvazquez bourby
	Global diversity in the human salivary microbiome [My Copy] Genome Research (April 2009) by Ivan Nasidze, Jing Li, Dominique Quinque, Kun Tang, Mark Stoneking posted to microbes microbiome migration popgen by djkt to the group iSEEM on 2009-04-01 20:02:39 as along with 2 people skembel jbhiatt
	A single regulatory gene is sufficient to alter bacterial host range [My Copy] Nature, Vol. 458, No. 7235. (12 March 2009), pp. 215-218. by Mark J. Mandel, Michael S. Wollenberg, Eric V. Stabb, Karen L. Visick, Edward G. Ruby posted to microbes microbiome symbiosis by djkt to the group iSEEM on 2009-03-21 02:13:44 as along with 5 people kinestetika biomcgary neils sconlan flybell
	Rapid Pathway Evolution Facilitated by Horizontal Gene Transfers across Prokaryotic Lineages [My Copy] PLoS Genet, Vol. 5, No. 3. (6 March 2009), e1000402. by Wataru Iwasaki, Toshihisa Takagi posted to evolution gene-transfer microbes sysbio by djkt to the group iSEEM on 2009-03-06 19:37:03 as along with 2 people fishinwind trfield
	Estimating the size of the bacterial pan-genome. [My Copy] Trends in genetics : TIG, Vol. 25, No. 3. (23 March 2009), pp. 107-110. by Pascal Lapierre, J. Peter Gogarten posted to evolution genome microbes proteins by djkt to the group iSEEM on 2009-03-05 16:26:54 as along with 4 people treangen azazello skembel nyyu
	Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre [My Copy] Environmental Microbiology, Vol. 11, No. 6. (2009), pp. 1358-1375. by Rachel S. Poretsky, Ian Hewson, Shulei Sun, Andrew E. Allen, Jonathan P. Zehr, Mary A. Moran posted to ecology expression metagenomics microbes by djkt to the group iSEEM on 2009-03-03 00:04:27 as along with 3 people kinestetika jmeppley skembel
	Inferring genomic flux in bacteria [My Copy] Genome Research, Vol. 19, 306. by Xavier Didelot, Aaron Darling, Daniel Falush posted to duplication evolution indel microbes by djkt to the group iSEEM on 2009-02-10 00:38:49 as
	Widespread balancing selection and pathogen-driven selection at blood group antigen genes [My Copy] Genome Research, Vol. 19, 199. by Matteo Fumagalli, Rachele Cagliani, Uberto Pozzoli, et al.Stefania Riva, Giacomo P. Comi, Giorgia Menozzi, Nereo Bresolin, Manuela Sironi posted to immunity microbes microbiome pathogen selection by djkt to the group iSEEM on 2009-02-10 00:22:54 as
	Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000344. by Marie Touchon, Claire Hoede, Olivier Tenaillon, et al.Valérie Barbe, Simon Baeriswyl, Philippe Bidet, Edouard Bingen, Stéphane Bonacorsi, Christiane Bouchier, Odile Bouvet, Alexandra Calteau, Hélène Chiapello, Olivier Clermont, Stéphane Cruveiller, Antoine Danchin, Médéric Diard, Carole Dossat, Meriem E. Karoui, Eric Frapy, Louis Garry, Jean M. Ghigo, Anne M. Gilles, James Johnson, Chantal Le Bouguénec, Mathilde Lescat, Sophie Mangenot, Vanessa Martinez-Jéhanne, Ivan Matic, Xavier Nassif, Sophie Oztas, Marie A. Petit, Christophe Pichon, Zoé Rouy, Claude S. Ruf, Dominique Schneider, Jérôme Tourret, Benoit Vacherie, David Vallenet, Claudine Médigue, Eduardo P. C. Rocha, Erick Denamur posted to chromosome duplication evolution microbes selection by djkt to the group iSEEM on 2009-02-05 17:55:51 as along with 3 people calderonv katholt jjray
	The Peopling of the Pacific from a Bacterial Perspective [My Copy] Science, Vol. 323, No. 5913. (23 January 2009), pp. 527-530. by Yoshan Moodley, Bodo Linz, Yoshio Yamaoka, et al.Helen M. Windsor, Sebastien Breurec, Jeng-Yih Wu, Ayas Maady, Steffie Bernhoft, Jean-Michel Thiberge, Suparat Phuanukoonnon, Gangolf Jobb, Peter Siba, David Y. Graham, Barry J. Marshall, Mark Achtman posted to microbes microbiome migration popgen by djkt to the group iSEEM on 2009-01-23 17:07:40 as along with 7 people katholt miaohehe jbhiatt anphony skembel disrael neils
	Protein kinase R reveals an evolutionary model for defeating viral mimicry [My Copy] Nature (30 November 2008) by Nels C. Elde, Stephanie J. Child, Adam P. Geballe, Harmit S. Malik posted to evolution microbes pathogen virus by djkt to the group iSEEM on 2009-01-21 20:48:38 as along with 2 people kieran101 neils
	A core gut microbiome in obese and lean twins [My Copy] Nature (30 November 2008) by Peter J. Turnbaugh, Micah Hamady, Tanya Yatsunenko, et al.Brandi L. Cantarel, Alexis Duncan, Ruth E. Ley, Mitchell L. Sogin, William J. Jones, Bruce A. Roe, Jason P. Affourtit, Michael Egholm, Bernard Henrissat, Andrew C. Heath, Rob Knight, Jeffrey I. Gordon posted to human metagenomics microbes microbiome by djkt to the group iSEEM on 2009-01-21 20:45:48 as along with 10 people and 1 group jmeppley Thaverkamp azazello skembel idoerg slevy03 booker jbhiatt Zephyrus guhjy Microbial-Ecology
	Clonal diversity of Streptococcus mitis biovar 1 isolates from the oral cavity of human neonates. [My Copy] Clinical and diagnostic laboratory immunology, Vol. 3, No. 5. (September 1996), pp. 517-522. by S. Fitzsimmons, M. Evans, C. Pearce, et al.M. J. Sheridan, R. Wientzen, G. Bowden, M. F. Cole posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 22:31:19 as
	Population diversity and dynamics of Streptococcus mitis, Streptococcus oralis, and Streptococcus infantis in the upper respiratory tracts of adults, determined by a nonculture strategy. [My Copy] Infection and immunity, Vol. 76, No. 5. (May 2008), pp. 1889-1896. by M. Bek-Thomsen, H. Tettelin, I. Hance, K. E. Nelson, M. Kilian posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 22:01:01 as
	Molecular analysis of human oral microbiota [My Copy] Journal of Periodontal Research, Vol. 40, No. 3. (June 2005), pp. 277-285. by Mitsuo Sakamoto, Makoto Umeda, Yoshimi Benno posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 22:00:11 as
	Survey of oral microbial diversity using PCR-based denaturing gradient gel electrophoresis. [My Copy] Journal of dental research, Vol. 84, No. 6. (June 2005), pp. 559-564. by Y. Li, C. Y. Ku, J. Xu, D. Saxena, P. W. Caufield posted to diversity microbes microbiome symbiosis by djkt to the group iSEEM on 2009-01-20 21:59:18 as
	Physiological and serological variation in Streptococcus mitis biovar 1 from the human oral cavity during the first year of life. [My Copy] Archives of oral biology, Vol. 52, No. 1. (January 2007), pp. 90-99. by J. L. Kirchherr, G. H. Bowden, M. F. Cole, et al.Y. Kawamura, D. A. Richmond, M. J. Sheridan, K. A. Wirth posted to microbes microbiome symbiosis variation by djkt to the group iSEEM on 2009-01-20 21:58:50 as
	The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria [My Copy] Science, Vol. 323, No. 5912. (16 January 2009), pp. 379-382. by Nancy A. Moran, Heather J. Mclaughlin, Rotem Sorek posted to evolution indel microbes mutation symbiosis by djkt to the group iSEEM on 2009-01-17 00:44:00 as along with 7 people and 1 group kinestetika JeremyZucker emptyhb abizar behindtherabbit bpb pansapiens MetabolicModeling
	A major clade of prokaryotes with ancient adaptations to life on land [My Copy] Mol Biol Evol (10 November 2008), msn247. by Fabia U. Battistuzzi, Blair S. Hedges posted to environment evolution microbes by djkt to the group iSEEM on 2009-01-13 17:23:51 as along with 2 people jmeppley skato_toyaku
	Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence [My Copy] Genome Biology, Vol. 9 (15 December 2008), R171. by Daniel, Dyann F. Wirth posted to microbes popgen selection by djkt to the group iSEEM on 2009-01-07 01:34:03 as along with 1 person ilyashl
	High Functional Diversity in <named-content xmlns:xlink="http://www.w3.org/1999/xlink" content-type="genus-species" xlink:type="simple">Mycobacterium tuberculosis</named-content> Driven by Genetic Drift and Human Demography [My Copy] PLoS Biol, Vol. 6, No. 12. (16 December 2008), e311. by Ruth Hershberg, Mikhail Lipatov, Peter M. Small, et al.Hadar Sheffer, Stefan Niemann, Susanne Homolka, Jared C. Roach, Kristin Kremer, Dmitri A. Petrov, Marcus W. Feldman, Sebastien Gagneux posted to evolution human microbes popgen by djkt to the group iSEEM on 2008-12-16 19:35:28 as along with 7 people katholt sandfire xingxu skembel jlgreen druvus vplagnol
	The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [My Copy] PLoS Biol, Vol. 6, No. 11. (18 November 2008), e280. by Les Dethlefsen, Sue Huse, Mitchell L. Sogin, David A. Relman posted to 16s human metagenomics microbes by djkt to the group iSEEM on 2008-11-18 23:47:20 as along with 7 people and 1 group hexaquo azazello sconlan jmeppley treangen skembel maggiecontreras Waikato - Erebus
	Horizontal versus familial transmission of Helicobacter pylori. [My Copy] PLoS pathogens, Vol. 4, No. 10. (October 2008) by S. Schwarz, G. Morelli, B. Kusecek, et al.A. Manica, F. Balloux, R. J. Owen, D. Y. Graham, S. van der Merwe, M. Achtman, S. Suerbaum posted to biogeography genographic microbes popgen by djkt to the group iSEEM on 2008-10-28 18:08:05 as along with 1 person sandfire
	Rapid quantitative profiling of complex microbial populations [My Copy] Nucleic Acids Research, Vol. 34, No. 1. (2006), pp. e5-e5. by Chana Palmer, Elisabeth M. Bik, Michael B. Eisen, et al.Paul B. Eckburg, Theodore R. Sana, Paul K. Wolber, David A. Relman, Patrick O. Brown posted to arrays metagenomics microbes by djkt to the group iSEEM on 2008-10-23 22:00:29 as
	An African origin for the intimate association between humans and Helicobacter pylori [My Copy] Nature by Bodo Linz, François Balloux, Yoshan Moodley, et al.Andrea Manica, Hua Liu, Philippe Roumagnac, Daniel Falush, Christiana Stamer, Franck Prugnolle, Schalk W. van der Merwe, Yoshio Yamaoka, David Y. Graham, Emilio Perez-Trallero, Torkel Wadstrom, Sebastian Suerbaum, Mark Achtman posted to biogeography genographic human microbes by djkt to the group iSEEM on 2008-10-23 21:50:01 as along with 7 people and 1 group nyyu carlk guhjy oamg brembs xingxu Xavier Glimcher_Lab
	Phylogenetic clustering and overdispersion in bacterial communities. [My Copy] Ecology, Vol. 87, No. 7 Suppl. (July 2006) by M. C. Horner-Devine, B. J. Bohannan posted to community microbes phylogenetics by djkt to the group iSEEM on 2008-10-23 00:31:17 as
	Innate immunity and intestinal microbiota in the development of Type 1 diabetes [My Copy] Nature (21 September 2008) by Li Wen, Ruth E. Ley, Pavel, et al.Peter B. Stranges, Lia Avanesyan, Austin C. Stonebraker, Changyun Hu, Susan F. Wong, Gregory L. Szot, Jeffrey A. Bluestone, Jeffrey I. Gordon, Alexander V. Chervonsky posted to human immunity microbes by djkt to the group iSEEM on 2008-10-22 19:53:06 as along with 3 people vplagnol Zephyrus jdbowes
	A simple, fast, and accurate method of phylogenomic inference [My Copy] Genome Biology, Vol. 9, No. 10. (13 October 2008), R151. by Martin Wu, Jonathan Eisen posted to microbes phylogenetics phylogenomic proteins by djkt to the group iSEEM on 2008-10-21 21:10:44 as along with 12 people and 1 group dakelley jeargle AaronDarling zwang cgaugain treangen Katje operon ellakat scryrps aramata druvus microbiology_nijmegen
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to microbes sequencing by djkt to the group iSEEM on 2008-09-26 18:51:36 as along with 17 people and 4 groups skembel n00c operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group microbiology_nijmegen Mycology

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metagenomics	64
evolution	39
ecology	34
microbiome	25
review	20
human	15
community	13
diversity	13
popgen	13
rev	13
phylogenetics	11
pmt	11
selection	10
symbiosis	9
expression	8
biogeography	7
environment	7
proteins	7
rna	7
virus	7
geobacter	5
chromosome	4
energy	4
food-web	4
migration	4
nanowire	4
pathogen	4
soil	4
acetate	3
arees2009	3
bacteria	3
biodiversity	3
biofilm	3
biosphere	3
disease	3
gene-transfer	3
gut	3
immunity	3
microbial	3
microorganism	3
mutation	3
network	3
pili	3
recombination	3
sequencing	3
trait	3
annotation	2
bias	2
biofuel	2
biology	2
biomass	2
biotechnology	2
body-size	2
chemical	2
china	2
climate	2
coal	2
codon	2
deep	2
degradation	2
design	2
diagenesis	2
duplication	2
ecosystems	2
engineering	2
epiphyte	2
food	2
fungi	2
gccontent	2
genographic	2
genome	2
genome_size	2
indel	2
interactions	2
jclub	2
microarray	2
nanoparticles	2
ocean	2
otu	2
phage	2
preservation	2
rhizobia	2
salmon	2
synthetic	2
sysbio	2
variation	2
worm	2
adhesin	1
coevolution	1
deep-biosphere	1
diversification	1
enzymes	1
feedstock	1
freeze-thaw	1
local-adaptation	1
new	1
obesity	1
peptidoglycan	1
simulation	1
tf	1

Group: iSEEM - with tag microbes [48 articles] Export

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