Group: Jarman Lab - library 39 articles Export

	Deep homology and the origins of evolutionary novelty. [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 818-823. by Neil Shubin, Cliff Tabin, Sean Carroll posted to transcription-regulation review grn evolution evodevo by isimpson to the group Jarman Lab on 2009-09-17 13:34:09 as along with 5 people nhp provero tomhebbron ramiro2k jjray
	Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (21 March 2008), e1000021. by Stephen A. Ramsey, Sandy L. Klemm, Daniel E. Zak, et al.Kathleen A. Kennedy, Vesteinn Thorsson, Bin Li, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Vladimir Litvak, Garnet Navarro, Jared C. Roach, Carrie M. Rosenberger, Alistair G. Rust, Natalya Yudkovsky, Alan Aderem, Ilya Shmulevich posted to tfbs must-read motifs motif-discovery bayesian by isimpson to the group Jarman Lab on 2009-08-26 16:53:14 as along with 3 people nicholasflann talponer ptrobajo
	A data integration framework for prediction of transcription factor targets. [My Copy] Annals of the New York Academy of Sciences, Vol. 1158 (March 2009), pp. 205-214. by Matti Nykter, Harri Lähdesmäki, Alistair Rust, Vesteinn Thorsson, Ilya Shmulevich posted to tfbs must-read motifs motif-discovery bayesian by isimpson to the group Jarman Lab on 2009-08-26 16:53:14 as
	Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources [My Copy] PLoS ONE, Vol. 3, No. 3. (26 March 2008), e1820. by Harri Lähdesmäki, Alistair G. Rust, Ilya Shmulevich posted to tfbs software must-read motifs motif-discovery bayesian by isimpson to the group Jarman Lab on 2009-08-26 16:49:30 as along with 4 people nklee dolchan druvus guhjy
	Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. [My Copy] Genome research, Vol. 17, No. 12. (7 December 2007), pp. 1850-1864. by J. Graham Ruby, Alexander Stark, Wendy K. Johnston, Manolis Kellis, David P. Bartel, Eric C. Lai posted to drosophila microrna by isimpson to the group Jarman Lab on 2009-08-06 16:59:15 as along with 9 people and 2 groups valeriehilgers pengchy hrogers stajich lp2 cabbagezs heliopais urgi Alexander_Kanitz microRNA Mycology
	Detecting microRNA binding and siRNA off-target effects from expression data. [My Copy] Nature methods, Vol. 5, No. 12. (2 December 2008), pp. 1023-1025. by Stijn van Dongen, Cei Abreu-Goodger, Anton J. Enright posted to microrna by isimpson to the group Jarman Lab on 2009-08-03 13:25:55 as along with 7 people and 1 group heliopais gdb jfr valeriehilgers russel12 megraw samgj microRNA
	Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2473-2477. by Antonio Marco, Charlotte Konikoff, Timothy L. Karr, Sudhir Kumar posted to microarray tfbs transcription-factor by isimpson to the group Jarman Lab on 2009-07-28 16:42:31 as along with 8 people Garamonfok TRHvidsten djkt rdiaz natstreet nuin sebastien_vigneau maximilianh
	Unlocking the secrets of the genome [My Copy] Nature, Vol. 459, No. 7249. (17 June 2009), pp. 927-930. by Susan E. Celniker, Laura A. L. Dillon, Mark B. Gerstein, et al.Kristin C. Gunsalus, Steven Henikoff, Gary H. Karpen, Manolis Kellis, Eric C. Lai, Jason D. Lieb, David M. MacAlpine, Gos Micklem, Fabio Piano, Michael Snyder, Lincoln Stein, Kevin P. White, Robert H. Waterston posted to must-read tfbs transcription-factor transcription-regulation by isimpson to the group Jarman Lab on 2009-06-18 14:48:08 as along with 4 people and 1 group daveGerrard polivares roys TRHvidsten BergmanLab
	The vertebrate primary cilium in development, homeostasis, and disease. [My Copy] Cell, Vol. 137, No. 1. (3 April 2009), pp. 32-45. by Jantje M. Gerdes, Erica E. Davis, Nicholas Katsanis posted to cilia ciliogenesis cilium disease review by isimpson to the group Jarman Lab on 2009-06-10 11:04:27 as along with 2 people guhjy wmatsui
	The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain [My Copy] Science, Vol. 324, No. 5929. (15 May 2009), pp. 929-930. by Skirmantas Kriaucionis, Nathaniel Heintz posted to dna nucleotide by isimpson to the group Jarman Lab on 2009-05-20 09:59:16 as along with 6 people aprickett dkolk01 GeeSharpMinor rpatward rschulz akundaje
	The locus of evolution: evo devo and the genetics of adaptation. [My Copy] Evolution; international journal of organic evolution, Vol. 61, No. 5. (May 2007), pp. 995-1016. by Hopi E. Hoekstra, Jerry A. Coyne posted to cis-regulatory-element evodevo evolution must-read regulation review transcription-factor by isimpson to the group Jarman Lab on 2009-05-07 09:43:49 as along with 15 people and 2 groups qwermish jbsaltz gjuggler stevanspringer mcphee dpollard balicea bpcusack TaqSys epigenetics jayster4 mimulus_99 mjoach kndiaye rvosa EisenLab FAB-lab
	The evolution of the cilium and the eukaryotic cell. [My Copy] Cell motility and the cytoskeleton, Vol. 66, No. 4. (April 2009), pp. 215-219. by H. Hartman, T. F. Smith posted to bootstrap cilia cilium evolution parsimony by isimpson to the group Jarman Lab on 2009-04-23 09:48:22 as
	Two-step selection of a single R8 photoreceptor: a bistable loop between senseless and rough locks in R8 fate. [My Copy] Development (Cambridge, England), Vol. 135, No. 24. (December 2008), pp. 4071-4079. by K. L. Pepple, M. Atkins, K. Venken, et al.K. Wellnitz, M. Harding, B. Frankfort, G. Mardon posted to drosophila eye proneural site-source transcription-factor by isimpson to the group Jarman Lab on 2009-04-21 11:31:02 as
	EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates [My Copy] Genome Research, Vol. 19, No. 2. (24 February 2009), pp. 327-335. by Albert J. Vilella, Jessica Severin, Abel Ureta-Vidal, Li Heng, Richard Durbin, Ewan Birney posted to orthologues paralogues by isimpson to the group Jarman Lab on 2009-03-13 15:42:40 as along with 7 people and 1 group Keywan druvus operon alpae birney stajich gjuggler Mycology
	Neuroscience: Up, down, flying around [My Copy] Nature, Vol. 458, No. 7235. (11 March 2009), pp. 156-157. by Ruth A. Eatock posted to chordotonal johnstons-organ mechanosensory by isimpson to the group Jarman Lab on 2009-03-12 09:43:39 as along with 1 person biomcgary
	Bayesian variable selection and data integration for biological regulatory networks [My Copy] (14 Dec 2007) by Shane T. Jensen, Guang Chen, Christian J. Stoeckert posted to no-tag by ggallone to the group Jarman Lab on 2009-02-06 11:05:29 as
	Network inference using informative priors [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14313-14318. by Sach Mukherjee, Terence P. Speed posted to no-tag by ggallone to the group Jarman Lab on 2009-02-05 12:38:56 as along with 10 people zufar bertelsen guhjy Borelli ptrobajo jfr markstoehr stringertheory roys tmmurali
	Integrating computational biology and forward genetics in Drosophila. [My Copy] PLoS genetics, Vol. 5, No. 1. (23 January 2009), e1000351. by Stein Aerts, Sven Vilain, Shu Hu, et al.Leon-Charles C. Tranchevent, Roland Barriot, Jiekun Yan, Yves Moreau, Bassem A. Hassan, Xiao-Jiang J. Quan posted to bioinformatics network proneural by isimpson to the group Jarman Lab on 2009-01-27 09:26:46 as along with 9 people and 3 groups gaulin gwallau StuartForrest roys daforerog nuin cisevol allysonlister barriot LabDros Drosophila-Genetics-Genomics-2008 BergmanLab
	lineage, cell polarity and inscuteable function in the perpheral nervous system of the Drosophila embryo [My Copy] posted to lineage md-es by Malina to the group Jarman Lab on 2009-01-23 10:48:58 as
	Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models. [My Copy] Bioinformatics (21 February 2008) by Osamu Hirose, Ryo Yoshida, Seiya Imoto, et al.Rui Yamaguchi, Tomoyuki Higuchi, D Stephen S. Charnock-Jones, Cristin Print, Satoru Miyano posted to no-tag by ggallone to the group Jarman Lab on 2009-01-14 12:23:01 as along with 3 people guhjy shigepong bertelsen
	Ensemble learning of genetic networks from time-series expression data [My Copy] Bioinformatics (5 November 2007), btm514. by Dougu Nam, Sung H. Yoon, Jihyun F. Kim posted to no-tag by ggallone to the group Jarman Lab on 2009-01-14 12:19:22 as
	Inference of gene regulatory networks and compound mode of action from time course gene expression profiles [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 815-822. by Mukesh Bansal, Giusy D. Gatta, Diego di Bernardo posted to no-tag by ggallone to the group Jarman Lab on 2009-01-14 12:15:25 as along with 4 people Borelli cswinburne ivokwee tvdbulck
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to no-tag by ggallone to the group Jarman Lab on 2008-12-17 12:18:33 as along with 19 people JoeBanks arider1 megraw TRHvidsten siebert jo_davies suteedee burak realzhang kengg maralena ptrobajo tmmurali guhjy roys marck caseybrown djkt srp33
	Causal discovery from a mixture of experimental and observational data [My Copy] In In UAI (1999), pp. 116-125. by Gregory F. Cooper, Changwon Yoo posted to no-tag by ggallone to the group Jarman Lab on 2008-12-17 12:14:44 as
	Heuristic Approach to Sparse Approximation of Gene Regulatory Networks [My Copy] Journal of Computational Biology, Vol. 15, No. 9. (2008), pp. 1173-1186. by M. Andrecut, S. Huang, S. A. Kauffman posted to no-tag by ggallone to the group Jarman Lab on 2008-12-09 18:06:09 as along with 2 people balicea lptolik
	Computational systems biology [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210. by Hiroaki Kitano posted to no-tag by ggallone to the group Jarman Lab on 2008-12-09 17:24:27 as along with 24 people and 5 groups jporternj tom4m3 schmidtm jaimie nedwards dansullivanblk daforerog reyez frohike irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc maburkitt shikin dbk-lab TCR_Signaling SysbioMPI-TCells livingthing GeneGo
	Inferring Cellular Networks Using Probabilistic Graphical Models [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805. by Nir Friedman posted to no-tag by ggallone to the group Jarman Lab on 2008-12-01 17:25:12 as along with 24 people and 1 group antonkratz jxl phoenixzxl abhishek_tiwari richardbickerton ruichu bertelsen ldfu ujh lfriedl opheliav ryang wnpx nirfriedman neveaire koller helsley dimatura edwardmorrissey vietanh0 Yumyai srp33 saman_vp jo_davies kdl
	Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach [My Copy] BMC Neuroscience, Vol. 8 (31 July 2007), 59. by Tiago R. Magalhaes, Jessica Palmer, Pavel Tomancak, Katherine S. Pollard posted to microarray neurogenesis by ajarman to the group Jarman Lab on 2008-11-14 10:08:15 as along with 1 person isimpson
	The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo [My Copy] Genome Biology, Vol. 7, No. 5. (2006), R36. by Richard Bonneau, David Reiss, Paul Shannon, et al.Marc Facciotti, Leroy Hood, Nitin Baliga, Vesteinn Thorsson posted to no-tag by ggallone to the group Jarman Lab on 2008-11-13 16:35:47 as along with 7 people lawraga cswinburne dragonrez jfr frohike roys jo_davies
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to no-tag by ggallone to the group Jarman Lab on 2008-11-13 16:29:16 as along with 34 people and 2 groups nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali EBI-regulation Plantandetc
	Modeling and Simulation of Genetic Regulatory Systems: A Literature Review [My Copy] Journal of Computational Biology, Vol. 9, No. 1. (January 2002), pp. 67-103. by Hidde de Jong posted to no-tag by ggallone to the group Jarman Lab on 2008-11-13 16:22:15 as along with 27 people and 5 groups mjoach Borelli qluo antonkratz reyez tlse65 wangbo dlobo jago behindtherabbit cswinburne softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB VirtualPlants Plantandetc compneur
	Learning biological networks: from modules to dynamics. [My Copy] Nature chemical biology, Vol. 4, No. 11. (November 2008), pp. 658-664. by R. Bonneau posted to no-tag by ggallone to the group Jarman Lab on 2008-11-13 16:05:05 as along with 5 people lawraga guhjy hersh006 roys zwang
	A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors [My Copy] Nature Biotechnology, Vol. 23, No. 8. (24 July 2005), pp. 988-994. by Xiangdong Meng, Michael H. Brodsky, Scot A. Wolfe posted to technique by ajarman to the group Jarman Lab on 2008-11-12 17:22:07 as along with 3 people austin_mcdonald jbhiatt aalibes
	Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome [My Copy] Genome Biology, Vol. 6, No. 5. (2005), R40. by Arun Ramani, Razvan Bunescu, Raymond Mooney, Edward Marcotte posted to no-tag by ggallone to the group Jarman Lab on 2008-11-12 12:34:41 as along with 19 people and 4 groups fesousa yaredo setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc Complex Networks kdl Bioinformatics generif_paper
	Biology by numbers: mathematical modelling in developmental biology [My Copy] Vol. 8, No. 5. (May 2007), pp. 331-340. by Claire J. Tomlin, Jeffrey D. Axelrod posted to modelling by ajarman to the group Jarman Lab on 2008-11-11 17:00:08 as
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data [My Copy] Nat Genet, Vol. 34, No. 2. (11 May 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to algorithm co-regulation networks probabilistic by ggallone to the group Jarman Lab on 2008-11-11 16:58:54 as along with 25 people stharward bertelsen ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work
	How biologically relevant are interaction-based modules in protein networks? [My Copy] Genome Biol, Vol. 5, No. 11. (2004) by J. F. Poyatos, L. D. Hurst posted to networks phylogenetic proteins sub-networks validation by ggallone to the group Jarman Lab on 2008-11-11 16:53:32 as along with 4 people jfr carlk bpcusack yoonk
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to no-tag by ggallone to the group Jarman Lab on 2008-11-11 16:48:45 as along with 21 people and 3 groups daforerog shikin jimineep brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem kdl Bioinformatics JJJ
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted to classification co-expression interaction network protein by ggallone to the group Jarman Lab on 2008-11-11 16:44:18 as along with 29 people and 3 groups yaredo fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Complex Networks Bioinformatics GeneGo

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must-read	5
tfbs	5
transcription-factor	4
bayesian	3
evolution	3
motif-discovery	3
motifs	3
review	3
cilia	2
cilium	2
drosophila	2
evodevo	2
microarray	2
microrna	2
network	2
networks	2
proneural	2
transcription-regulation	2
algorithm	1
bioinformatics	1
bootstrap	1
chordotonal	1
ciliogenesis	1
cis-regulatory-element	1
classification	1
co-expression	1
co-regulation	1
disease	1
dna	1
eye	1
grn	1
interaction	1
johnstons-organ	1
lineage	1
md-es	1
mechanosensory	1
modelling	1
neurogenesis	1
nucleotide	1
orthologues	1
paralogues	1
parsimony	1
phylogenetic	1
probabilistic	1
protein	1
proteins	1
regulation	1
site-source	1
software	1
sub-networks	1
technique	1
validation	1

Group: Jarman Lab - library 39 articles Export

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