Register | Log in | FAQ      [?] 
Recent | Recommended | Search | Authors | Tags | Export

Group: EisenLab - with tag annotation [18 articles]

Recent papers posted by members of the EisenLab group with tag annotation
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to annotation comparative_genomics gene_finding genome_annotation human noncoding orf by stajich to the group EisenLab on 2007-12-09 07:19:20 as ** along with 15 people and 2 groups tmmurali rvosa balicea sebastien_vigneau giovanni neils cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema FAB-lab Berkeley Mycology
  • The Human Genome Browser at UCSC
    Genome Res., Vol. 12, No. 6. (1 June 2002), pp. 996-1006.
    by James W Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, And D Haussler
    posted to annotation genome by indigoviolet to the group EisenLab on 2007-11-29 02:06:23 as ** along with 2 people myourshaw jfr
  • Biopipe: a flexible framework for protocol-based bioinformatics analysis.
    Genome Res, Vol. 13, No. 8. (August 2003), pp. 1904-1915.
    by S Hoon, KK Ratnapu, JM Chia, B Kumarasamy, X Juguang, M Clamp, A Stabenau, S Potter, L Clarke, E Stupka
    posted to annotation genome by indigoviolet to the group EisenLab on 2007-11-29 02:05:11 as ** along with 3 people moborg dullhunk jermth
  • An integrated computational pipeline and database to support whole-genome sequence annotation
    Genome Biology, Vol. 3, No. 12. (2002), pp. research0081.1-0081.11.
    by CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis
    posted to annotation genome by indigoviolet to the group EisenLab on 2007-11-29 02:04:41 as ** along with 1 person pengchy
  • CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
    Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1061-1067.
    by Genis Parra, Keith Bradnam, Ian Korf
    posted to annotation genome by indigoviolet to the group EisenLab on 2007-11-28 10:26:29 as ** along with 3 people and 1 group stajich wenhan GustavoLacerda Berkeley Mycology
  • The COG database: an updated version includes eukaryotes.
    BMC Bioinformatics, Vol. 4 (11 September 2003)
    by RL Tatusov, ND Fedorova, JD Jackson, AR Jacobs, B Kiryutin, EV Koonin, DM Krylov, R Mazumder, SL Mekhedov, AN Nikolskaya, BS Rao, S Smirnov, AV Sverdlov, S Vasudevan, YI Wolf, JJ Yin, DA Natale
    posted to annotation genome homology by indigoviolet to the group EisenLab on 2007-11-28 10:23:39 as ** along with 8 people and 1 group tharris dmp arve j3xucite treangen bluto westoll natstreet C. elegans / WormBase
  • An overview of Ensembl.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 925-928.
    by E Birney, TD Andrews, P Bevan, M Caccamo, Y Chen, L Clarke, G Coates, J Cuff, V Curwen, T Cutts, T Down, E Eyras, XM Fernandez-Suarez, P Gane, B Gibbins, J Gilbert, M Hammond, HR Hotz, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, H Lehvaslaiho, G McVicker, C Melsopp, P Meidl, E Mongin, R Pettett, S Potter, G Proctor, M Rae, S Searle, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, A Ureta-Vidal, KC Woodwark, G Cameron, R Durbin, A Cox, T Hubbard, M Clamp
    posted to annotation ensembl genome pipeline by indigoviolet to the group EisenLab on 2007-11-24 07:40:10 as ** along with 6 people dragonrez chad_davis dullhunk incovoma Nilza mcgannd
  • Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms.
    Genome Biol, Vol. 7, No. 3. (2006)
    by J Li, MM Riehle, Y Zhang, J Xu, F Oduol, SM Gomez, K Eiglmeier, BM Ueberheide, J Shabanowitz, DF Hunt, JM Ribeiro, KD Vernick
    posted to annotation genome by indigoviolet to the group EisenLab on 2007-11-23 08:56:23 as **
  • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
    Science, Vol. 296, No. 5565. (5 April 2002), pp. 92-100.
    by SA Goff, D Ricke, TH Lan, G Presting, R Wang, M Dunn, J Glazebrook, A Sessions, P Oeller, H Varma, D Hadley, D Hutchison, C Martin, F Katagiri, BM Lange, T Moughamer, Y Xia, P Budworth, J Zhong, T Miguel, U Paszkowski, S Zhang, M Colbert, WL Sun, L Chen, B Cooper, S Park, TC Wood, L Mao, P Quail, R Wing, R Dean, Y Yu, A Zharkikh, R Shen, S Sahasrabudhe, A Thomas, R Cannings, A Gutin, D Pruss, J Reid, S Tavtigian, J Mitchell, G Eldredge, T Scholl, RM Miller, S Bhatnagar, N Adey, T Rubano, N Tusneem, R Robinson, J Feldhaus, T Macalma, A Oliphant, S Briggs
    posted to annotation genome by indigoviolet to the group EisenLab on 2007-11-23 08:47:00 as ** along with 2 people sdinka echinotrix
  • Improving gene recognition accuracy by combining predictions from two gene-finding programs
    Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1034-1045.
    by Sanja Rogic, Francis BF Ouellette, Alan K Mackworth
    posted to annotation gene-prediction genome protein-coding by indigoviolet to the group EisenLab on 2007-11-23 08:45:41 as ** along with 1 person GustavoLacerda
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to annotation comparative genome protein-coding by indigoviolet to the group EisenLab on 2007-11-23 08:34:28 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    by Drosophila Consortium
    posted to 12flies annotation comparative drosophila fly genome by indigoviolet to the group EisenLab on 2007-11-19 08:35:38 as ** along with 20 people and 5 groups pengchy operon tmmurali djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics csb_journal_club_public Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
    Bioinformatics (5 May 2007)
    by Avril Coghlan, Richard Durbin
    posted to annotation comparative gene_finding by indigoviolet to the group EisenLab on 2007-11-07 10:19:18 as ** along with 5 people and 2 groups tharris druvus stajich GustavoLacerda dmc C. elegans / WormBase Durbin group
  • Peptides Encoded by Short ORFs Control Development and Define a New Eukaryotic Gene Family
    PLoS Biology, Vol. 5, No. 5. (1 May 2007), e106.
    by Máximo I Galindo, José I Pueyo, Sylvaine Fouix, Sarah A Bishop, Juan P Couso
    posted to gene_family development annotation by dpollard to the group EisenLab on 2007-05-31 23:40:10 as **
  • Improving gene annotation using peptide mass spectrometry
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 231-239.
    by Stephen Tanner, Zhouxin Shen, Julio Ng, Liliana Florea, Roderic Guigo, Steven P Briggs, Vineet Bafna
    posted to annotation mass-spec by brant to the group EisenLab on 2007-02-14 00:27:07 as ** along with 2 people wenhan nedwards
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to annotation cbriggsae comparative genomes_paper by indigoviolet to the group EisenLab on 2006-12-04 00:38:53 as ** along with 2 people stajich sujaikumar
  • Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by S Djebali, F Delaplace, HR Crollius
    posted to annotation eukaryote gene method by dpollard to the group EisenLab on 2006-09-30 00:21:18 as ** along with 1 person indigoviolet
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
    posted to annotation drosophila evolution by dpollard to the group EisenLab on 2006-04-08 23:10:33 as read along with 4 people and 1 group indigoviolet nklee cisevol brant cis-regulatory-evolution
    • Note: You may cite this page as: http://www.citeulike.org/group/652/tag/annotation

    RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.