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Group: EisenLab - with tag binding [18 articles]

Recent papers posted by members of the EisenLab group with tag binding
  • ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos.
    Nat Protoc, Vol. 1, No. 6. (2006), pp. 2839-2855.
    by T Sandmann, JS Jakobsen, EE Furlong
    posted to transcription_factor method drosophila chip_chip binding by dpollard to the group EisenLab on 2007-04-09 17:24:28 as ** along with 1 person johncumbers
  • In vitro analysis of DNA-protein interactions by proximity ligation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072.
    by SM Gustafsdottir, J Schlingemann, A Rada-Iglesias, E Schallmeiner, M Kamali-Moghaddam, C Wadelius, U Landegren
    posted to transcription_factor round_robin method eisen_journal_club colin_presented binding by dpollard to the group EisenLab on 2007-03-23 19:28:14 as ** along with 2 people jyuh zwang
  • Single-Molecule Detection of Transcription Factor Binding to DNA in Real Time: Specificity, Equilibrium, and Kinetic Parameters.
    Biochemistry, Vol. 45, No. 46. (21 November 2006), pp. 13794-13806.
    by Eric A Nalefski, Eugene Nebelitsky, Janice A Lloyd, Steven R Gullans
    posted to binding kenetics method motif by dpollard to the group EisenLab on 2006-11-17 13:00:37 as **
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to binding conserved constraint evolution noncoding pattern phylogeny prediction pwm rate selection specific transcription by dpollard to the group EisenLab on 2006-11-07 00:22:07 as read along with 6 people and 1 group briann adepace lusk nklee cisevol emptyhb cis-regulatory-evolution
  • Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
    Nature, Vol. 440, No. 7087., pp. 1050-1053.
    by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A Kassner, Thomas M Williams, Shu-Dan Yeh, John R True, Sean B Carroll
    posted to adaptive binding crm development drosophila expression gene insect phylogeny turnover by dpollard to the group EisenLab on 2006-11-06 23:55:32 as read along with 8 people RMGraze balicea tny adepace ranb Garamonfok blobbybirdman emptyhb
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as read
  • Regulation of the immunoglobulin heavy chain locus expression at the phylogenetic level of a bony fish: Transcription factor interaction with two variant octamer motifs.
    Gene (5 June 2006)
    by Jun-Ichi I Hikima, Mara L L Lennard, Melanie R R Wilson, Norman W W Miller, Gregory W W Warr
    posted to binding grammar motif promoter spacing transcription by dpollard to the group EisenLab on 2006-06-16 20:44:19 as **
  • Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945.
    by S Gunewardena, P Jeavons, Z Zhang
    posted to binding motif prediction structure transcription by dpollard to the group EisenLab on 2006-06-16 20:40:23 as ** along with 2 people samal nklee
  • Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.
    by V Mustonen, M Lässig
    posted to binding evolution polymorphism promoter selection transcription turnover by dpollard to the group EisenLab on 2006-06-10 00:48:36 as **** along with 4 people and 1 group kaarsinogen lusk cisevol emptyhb cis-regulatory-evolution
  • Flexible promoter architecture requirements for coactivator recruitment
    BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16.
    by Derek Y Chiang, David A Nix, Ryan K Shultzaberger, Audrey P Gasch, Michael B Eisen
    posted to binding expression grammar promoter spacing transcription yeast by dpollard to the group EisenLab on 2006-05-21 05:08:26 as ***** along with 1 person postrational
  • Evaluating phylogenetic footprinting for human-rodent comparisons.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437.
    by T Sauer, E Shelest, E Wingender
    posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard to the group EisenLab on 2006-05-01 22:45:46 as **
  • Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites.
    Genes Dev (17 March 2006)
    by Jay Z Z Parrish, Michael D D Kim, Lily Yeh Y Jan, Yuh Nung N Jan
    posted to binding brain development drosophila nervous neuro system transcription by dpollard to the group EisenLab on 2006-03-31 23:44:47 as **
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to 3utr adaptive binding development evolution expression gene microrna regulation by dpollard to the group EisenLab on 2006-03-21 20:29:40 as ** along with 14 people and 3 groups jerlich mfenner aprasad dayjm marcius eckart_bindewald mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz jfr caseybrown microRNA BioinfoCIPF SGU-CIPF
  • The design of transcription-factor binding sites is affected by combinatorial regulation.
    Genome Biol, Vol. 6, No. 12. (2005)
    by Y Bilu, N Barkai
    posted to binding grammar transcription yeast by dpollard to the group EisenLab on 2006-03-21 20:03:38 as *** along with 7 people chrn tabu samal adepace lewbin nklee xili03
  • Integrating genomic data to predict transcription factor binding.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 83-94.
    by DT Holloway, M Kon, C DeLisi
    posted to binding data genomic integration prediction transcription by dpollard to the group EisenLab on 2006-03-21 19:53:19 as ** along with 3 people malcook adsmitty nklee
  • Defining the sequence-recognition profile of DNA-binding molecules
    PNAS, Vol. 103, No. 4. (24 January 2006), pp. 867-872.
    by Christopher L Warren, Natasha C Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari
    posted to binding factor selex transcription by indigoviolet to the group EisenLab on 2006-02-26 00:56:38 as **** along with 4 people emilyhare samal stsaft blobbybirdman
  • Genome Biology | Full text | The design of transcription-factor binding sites is affected by combinatorial regulation
    posted to binding cis-regulation computational constraint factor transcription yeast by indigoviolet to the group EisenLab on 2005-12-06 03:51:51 as ***
  • MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
    Genome Biol, Vol. 5, No. 12. (2004)
    by AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
    posted to alignments binding conserved evolutionary factor model monkey multiple site transcription by indigoviolet to the group EisenLab on 2005-11-13 03:10:05 as read along with 5 people and 1 group tuck lusk Garamonfok cisevol ihpark cis-regulatory-evolution
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