Group: EisenLab - with tag binding [19 articles] Export Sort

Recent papers posted by members of the EisenLab group with tag binding

Hide details

	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to binding binding-sites factor motif phylogen prediction tfbs transcription by Stew to the group EisenLab on 2009-06-17 15:29:29 as along with 9 people and 2 groups bsamal dquest marti Lombardo_7 megraw operon nuin AlexBateman scjparker Bioinformatics - CRUK Journal picks
	ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. [My Copy] Nat Protoc, Vol. 1, No. 6. (2006), pp. 2839-2855. by T. Sandmann, J. S. Jakobsen, E. E. Furlong posted to transcription_factor method drosophila chip_chip binding by dpollard to the group EisenLab on 2007-04-09 17:24:28 as along with 1 person johncumbers
	In vitro analysis of DNA-protein interactions by proximity ligation. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072. by S. M. Gustafsdottir, J. Schlingemann, A. Rada-Iglesias, et al.E. Schallmeiner, M. Kamali-Moghaddam, C. Wadelius, U. Landegren posted to transcription_factor round_robin method eisen_journal_club colin_presented binding by dpollard to the group EisenLab on 2007-03-23 19:28:14 as along with 2 people guhjy zwang
	Single-Molecule Detection of Transcription Factor Binding to DNA in Real Time: Specificity, Equilibrium, and Kinetic Parameters. [My Copy] Biochemistry, Vol. 45, No. 46. (21 November 2006), pp. 13794-13806. by Eric A. Nalefski, Eugene Nebelitsky, Janice A. Lloyd, Steven R. Gullans posted to binding kenetics method motif by dpollard to the group EisenLab on 2006-11-17 13:00:37 as
	Position specific variation in the rate of evolution in transcription factor binding sites. [My Copy] BMC Evol Biol, Vol. 3, No. 1. (28 August 2003) by A. M. Moses, D. Y. Chiang, M. Kellis, E. S. Lander, M. B. Eisen posted to binding conserved constraint evolution noncoding pattern phylogeny prediction pwm rate selection specific transcription by dpollard to the group EisenLab on 2006-11-07 00:22:07 as along with 6 people and 1 group briann adepace lusk nklee cisevol emptyhb cis-regulatory-evolution
	Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene [My Copy] Nature, Vol. 440, No. 7087., pp. 1050-1053. by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, et al.Victoria A. Kassner, Thomas M. Williams, Shu-Dan Yeh, John R. True, Sean B. Carroll posted to adaptive binding crm development drosophila expression gene insect phylogeny turnover by dpollard to the group EisenLab on 2006-11-06 23:55:32 as along with 8 people RMGraze balicea tny adepace ranb Garamonfok blobbybirdman emptyhb
	Transcriptional repression in the Drosophila embryo. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262. by S. Gray, H. Cai, S. Barolo, M. Levine posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as
	Regulation of the immunoglobulin heavy chain locus expression at the phylogenetic level of a bony fish: Transcription factor interaction with two variant octamer motifs. [My Copy] Gene (5 June 2006) by Jun-Ichi I. Hikima, Mara L L. Lennard, Melanie R R. Wilson, Norman W W. Miller, Gregory W W. Warr posted to binding grammar motif promoter spacing transcription by dpollard to the group EisenLab on 2006-06-16 20:44:19 as
	Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations. [My Copy] J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945. by S. Gunewardena, P. Jeavons, Z. Zhang posted to binding motif prediction structure transcription by dpollard to the group EisenLab on 2006-06-16 20:40:23 as along with 2 people samal nklee
	Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941. by V. Mustonen, M. Lässig posted to binding evolution polymorphism promoter selection transcription turnover by dpollard to the group EisenLab on 2006-06-10 00:48:36 as along with 4 people and 1 group kaarsinogen lusk cisevol emptyhb cis-regulatory-evolution
	Flexible promoter architecture requirements for coactivator recruitment [My Copy] BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16. by Derek Y. Chiang, David A. Nix, Ryan K. Shultzaberger, Audrey P. Gasch, Michael B. Eisen posted to binding expression grammar promoter spacing transcription yeast by dpollard to the group EisenLab on 2006-05-21 05:08:26 as along with 2 people JustinCrocker postrational
	Evaluating phylogenetic footprinting for human-rodent comparisons. [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437. by T. Sauer, E. Shelest, E. Wingender posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard to the group EisenLab on 2006-05-01 22:45:46 as
	Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. [My Copy] Genes Dev (17 March 2006) by Jay Z Z. Parrish, Michael D D. Kim, Lily Yeh Y. Jan, Yuh Nung N. Jan posted to binding brain development drosophila nervous neuro system transcription by dpollard to the group EisenLab on 2006-03-31 23:44:47 as
	The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution. [My Copy] Science (24 November 2005) by Kyle Kai-How K. Farh, Andrew Grimson, Calvin Jan, et al.Benjamin P P. Lewis, Wendy K K. Johnston, Lee P P. Lim, Christopher B B. Burge, David P P. Bartel posted to 3utr adaptive binding development evolution expression gene microrna regulation by dpollard to the group EisenLab on 2006-03-21 20:29:40 as along with 15 people and 3 groups daforerog jerlich mfenner aprasad dayjm marcius eckart_bindewald mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz jfr caseybrown microRNA BioinfoCIPF SGU-CIPF
	The design of transcription-factor binding sites is affected by combinatorial regulation. [My Copy] Genome Biol, Vol. 6, No. 12. (2005) by Y. Bilu, N. Barkai posted to binding grammar transcription yeast by dpollard to the group EisenLab on 2006-03-21 20:03:38 as along with 7 people chrn tabu samal adepace lewbin nklee xili03
	Integrating genomic data to predict transcription factor binding. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 83-94. by D. T. Holloway, M. Kon, C. DeLisi posted to binding data genomic integration prediction transcription by dpollard to the group EisenLab on 2006-03-21 19:53:19 as along with 3 people and 1 group malcook adsmitty nklee SIMR bioinformatics
	Defining the sequence-recognition profile of DNA-binding molecules [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 4. (24 January 2006), pp. 867-872. by Christopher L. Warren, Natasha C. S. Kratochvil, Karl E. Hauschild, et al.Shane Foister, Mary L. Brezinski, Peter B. Dervan, George N. Phillips, Aseem Z. Ansari posted to binding factor selex transcription by indigoviolet to the group EisenLab on 2006-02-26 00:56:38 as along with 5 people absterga emilyhare samal stsaft blobbybirdman
	Genome Biology \| Full text \| The design of transcription-factor binding sites is affected by combinatorial regulation [My Copy] posted to binding cis-regulation computational constraint factor transcription yeast by indigoviolet to the group EisenLab on 2005-12-06 03:51:51 as
	MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model. [My Copy] Genome Biol, Vol. 5, No. 12. (2004) by A. M. Moses, D. Y. Chiang, D. A. Pollard, V. N. Iyer, M. B. Eisen posted to alignments binding conserved evolutionary factor model monkey multiple site transcription by indigoviolet to the group EisenLab on 2005-11-13 03:10:05 as along with 4 people and 1 group tuck lusk Garamonfok cisevol cis-regulatory-evolution

Note: You may cite this page as: http://www.citeulike.org/group/652/tag/binding

structure	340
protein	184
algorithm	139
transcription	109
site	106
review	105
complexes	97
protein-ligand	93
prediction	90
electrostatics	78
free_energy	78
ligand	75
factor	74
embl	72
networks	72
dna	71
evolution	71
database	67
protein-protein	65
proj_assembly	61
md_simulation	60
drug-discovery	57
docking	56
membrane	55
sites	51
yeast	50
modelling	49
motif	44
activation	42
ligands	42
chemistry	36
interaction	36
energy	34
proj_interprets	33
agonist	32
drug	32
statistics	31
diffusion	30
folding	30
md	29
receptor	28
14-3-3	27
gene	27
disorder	26
experimental	25
ppi	25
domain	24
peptide	24
rna	24
attention	23
computational	23
gpcr	23
modeling	23
molecular	23
peptides	23
brownian_dynamics	22
solvation	22
affinity	21
clustering	21
free-energy	21
hiv	21
kinetics	21
optical	21
b2ar	20
bioinformatics	20
simulation	20
tfbs	20
dynamics	19
model	19
allostery	18
enzyme	18
chromatin	17
sequence	17
classic	16
ic	16
proteins	16
software	16
bsc	15
data_integration	15
entropy	15
expression	15
regulation	15
specificity	15
tf	15
analysis	14
design	14
drosophila	14
method	14
non-redundant	14
optimization	14
protein_dynamics	14
surface	14
synchrony	14
validation	14
classification	13
energy_entropy	13
function	13
new	13
tight	13
titration	13

Group: EisenLab - with tag binding [19 articles] Export Sort

Related Tags