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Group: EisenLab - with tag expression [38 articles]

Recent papers posted by members of the EisenLab group with tag expression
  • Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e144.
    by Anastasia A Samsonova, Mahesan Niranjan, Steven Russell, Alvis Brazma
    posted to tissue prediction expression drosophila by brant to the group EisenLab on 2007-07-24 19:58:38 as ** along with 2 people dpollard sebastien_vigneau
  • Pre-Steady-State Decoding of the Bicoid Morphogen Gradient
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e46.
    by Sven Bergmann, Oded Sandler, Hila Sberro, Sara Shnider, Eyal Schejter, Ben-Zion Shilo, Naama Barkai
    posted to pattern model in_depth expression eisen_journal_club drosophila by dpollard to the group EisenLab on 2007-05-25 20:00:19 as read along with 3 people emilyhare adepace lusk
  • Cis-Regulatory Elements in the Accord Retrotransposon Result in Tissue-Specific Expression of the Drosophila melanogaster Insecticide Resistance Gene Cyp6g1
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1071-1077.
    by Henry Chung, Michael R Bogwitz, Caroline Mccart, Alex Andrianopoulos, Richard H Ffrench-Constant, Philip Batterham, Phillip J Daborn
    posted to transposable_elements tissue_specific expression drosophila cis_regulatory_elements by dpollard to the group EisenLab on 2007-03-26 07:55:30 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Integrating transcription factor binding site information with gene expression datasets.
    Bioinformatics (24 November 2006)
    by Ian B B Jeffery, Stephen F F Madden, Paul A A McGettigan, Guy Perrière, Aedín C C Culhane, Desmond G G Higgins
    posted to motif micro_array gene expression correlation by dpollard to the group EisenLab on 2007-01-19 16:12:50 as * along with 4 people jyuh gpalidwor wnpx SeungjoonOh
  • Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
    Nature, Vol. 440, No. 7087., pp. 1050-1053.
    by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A Kassner, Thomas M Williams, Shu-Dan Yeh, John R True, Sean B Carroll
    posted to adaptive binding crm development drosophila expression gene insect phylogeny turnover by dpollard to the group EisenLab on 2006-11-06 23:55:32 as read along with 9 people carlfulp RMGraze balicea tny adepace ranb Garamonfok blobbybirdman emptyhb
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as read
  • Expression profile of a degenerating neo-y chromosome in Drosophila.
    Curr Biol, Vol. 16, No. 17. (5 September 2006), pp. 1694-1699.
    by D Bachtrog
    posted to drosophila evolution expression gene loss mechanism neo-y selection by dpollard to the group EisenLab on 2006-09-08 19:17:54 as **
  • Widespread adaptive evolution of Drosophila genes with sex-biased expression.
    Genetics (1 September 2006)
    by Matthias Proeschel, Zhi Zhang, John Parsch
    posted to adaptive drosophila expression pattern sex specific by dpollard to the group EisenLab on 2006-09-08 18:34:09 as **
  • The evolution of abdominal reduction and the recent origin of distinct Abdominal-B transcript classes in Diptera
    Evolution & Development, Vol. 8, No. 3. (June 2006), pp. 241-251.
    by Yoder, H John, Carroll, B Sean
    posted to development evolution expression gene by emilyhare to the group EisenLab on 2006-07-13 01:07:03 as **
  • Variation within and among species in gene expression: raw material for evolution
    Molecular Ecology, Vol. 15, No. 5. (April 2006), pp. 1197-1211.
    by Andrew Whitehead, Douglas L Crawford
    posted to evolution expression gene review by emilyhare to the group EisenLab on 2006-07-11 21:31:43 as ** along with 1 person RMGraze
  • Genetic variation in human gene expression.
    Mamm Genome (12 June 2006)
    by Emmanouil T Dermitzakis, Barbara E Stranger
    posted to expression gene review variation by dpollard to the group EisenLab on 2006-06-16 21:00:17 as ** along with 4 people and 1 group psique cmm noano djkt FAB-lab
  • Neural lineages of the Drosophila brain: a three-dimensional digital atlas of the pattern of lineage location and projection at the late larval stage.
    J Neurosci, Vol. 26, No. 20. (17 May 2006), pp. 5534-5553.
    by W Pereanu, V Hartenstein
    posted to brain development drosophila expression gene pattern by dpollard to the group EisenLab on 2006-06-16 20:31:54 as **
  • Computational Models for Neurogenic Gene Expression in the Drosophila Embryo.
    Curr Biol (1 June 2006)
    by Robert P P Zinzen, Kate Senger, Mike Levine, Dmitri Papatsenko
    posted to drosophila expression network prediction transcription by dpollard to the group EisenLab on 2006-06-09 23:01:14 as ** along with 2 people emilyhare klo
  • Genomic Inferences of the cis-Regulatory Nucleotide Polymorphisms Underlying Gene Expression Differences between Drosophila melanogaster Mating Races.
    Mol Biol Evol (5 June 2006)
    by Naoki Osada, Michael H H Kohn, Chung-I I Wu
    posted to drosophila evolution expression polymorphism promoter speciation variation by dpollard to the group EisenLab on 2006-06-09 22:43:58 as *** along with 4 people emilyhare adepace natstreet emptyhb
  • Gene Regulation Divergence is a Major Contributor to the Evolution of Dobzhansky-Muller Incompatibilities between Species of Drosophila.
    Mol Biol Evol (6 June 2006)
    by Wilfried Haerty, Rama S S Singh
    posted to drosophila expression speciation variation by dpollard to the group EisenLab on 2006-06-09 22:28:09 as *** along with 2 people RMGraze ranb
  • Flexible promoter architecture requirements for coactivator recruitment
    BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16.
    by Derek Y Chiang, David A Nix, Ryan K Shultzaberger, Audrey P Gasch, Michael B Eisen
    posted to binding expression grammar promoter spacing transcription yeast by dpollard to the group EisenLab on 2006-05-21 05:08:26 as ***** along with 1 person postrational
  • PLoS Biology: Plasticity of the cis-Regulatory Input Function of a Gene
    posted to bacteria expression gene placticity regulation by dpollard to the group EisenLab on 2006-03-28 22:52:30 as ** along with 2 people samal brixtonmc
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to 3utr adaptive binding development evolution expression gene microrna regulation by dpollard to the group EisenLab on 2006-03-21 20:29:40 as ** along with 14 people and 3 groups jerlich mfenner aprasad dayjm marcius eckart_bindewald mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz jfr caseybrown microRNA BioinfoCIPF SGU-CIPF
  • Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes.
    BMC Genomics, Vol. 6 (27 November 2005)
    by S Lee, I Kohane, S Kasif
    posted to conserved development expression gene intergenic noncoding rate by dpollard to the group EisenLab on 2006-03-21 20:26:29 as ** along with 2 people balicea Garamonfok
  • Genome-wide expression dynamics during mouse embryonic development reveal similarities to Drosophila development.
    Dev Biol, Vol. 288, No. 2. (15 December 2005), pp. 595-611.
    by RA Wagner, R Tabibiazar, A Liao, T Quertermous
    posted to conserved development drosophila embryo expression gene insect mouse pattern transcription vertebrate by dpollard to the group EisenLab on 2006-03-21 20:22:42 as **
  • Natural antisense RNAs in the nervous system.
    Rev Neurosci, Vol. 16, No. 3. (2005), pp. 213-222.
    by S Korneev, M O'Shea
    posted to antisense brain development expression gene nervous rna system by dpollard to the group EisenLab on 2006-03-21 20:16:34 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Pair rule gene orthologs in spider segmentation
    Evolution & Development, Vol. 7, No. 6. (November 2005), pp. 618-628.
    by Wim G Damen, Ralf Janssen, Nikola-Michael Prpic
    posted to development drosophila evolution expression gene insect by dpollard to the group EisenLab on 2006-03-21 20:14:07 as ** along with 1 person balicea
  • Animal MicroRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3'UTR Evolution.
    Cell (7 December 2005)
    by Alexander Stark, Julius Brennecke, Natascha Bushati, Robert B B Russell, Stephen M M Cohen
    posted to 3utr evolution expression gene metazoan microrna by dpollard to the group EisenLab on 2006-03-21 20:08:59 as ** along with 9 people and 1 group natstreet jfr textoris mortenlindow mtagaya Garamonfok Evangelia heliopais emptyhb microRNA
  • Diffusion and scaling during early embryonic pattern formation.
    Proc Natl Acad Sci U S A, Vol. 102, No. 51. (20 December 2005), pp. 18403-18407.
    by T Gregor, W Bialek, RR de Ruyter van Steveninck, DW Tank, EF Wieschaus
    posted to diffusion drosophila embryo expression formation gene pattern scaling by dpollard to the group EisenLab on 2006-03-21 20:06:46 as *** along with 1 person adepace
  • Adaptive evolution by optimizing expression levels in different environments
    Trends in Microbiology, Vol. In Press, Corrected Proof
    by Madan M Babu, L Aravind
    posted to adaptive bacteria environment evolution expression gene by dpollard to the group EisenLab on 2006-03-21 20:00:58 as *** along with 2 people and 1 group bala lewbin DictyosteliumGroup
  • Origins of extrinsic variability in eukaryotic gene expression
    Nature (21 December 2005)
    by Dmitri Volfson, Jennifer Marciniak, William J Blake, Natalie Ostroff, Lev S Tsimring, Jeff Hasty
    posted to expression extrinsic gene noise variation yeast by dpollard to the group EisenLab on 2006-03-21 19:48:58 as ** along with 6 people jyuh bayesian balabu timflutre margaritis cjeans
  • Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network.
    BMC Bioinformatics, Vol. 7 (2006)
    by WY Chung, R Albert, I Albert, A Nekrutenko, KD Makova
    posted to coexpression duplication evolution expression gene by dpollard to the group EisenLab on 2006-03-21 19:16:21 as ** along with 1 person gpalidwor
  • Gene regulatory networks and the evolution of animal body plans.
    Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800.
    by EH Davidson, DH Erwin
    posted to body evolution expression gene network plan regulation by dpollard to the group EisenLab on 2006-03-21 19:10:15 as *** along with 14 people and 3 groups eldan bayesian xico dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch Ema natstreet WetBiology G4ID Genetics-of-Gambling
  • Low Rates of Expression-Profile Divergence in Highly-Expressed Genes and Tissue-Specific Genes During Mammalian Evolution.
    Mol Biol Evol (6 March 2006)
    by Ben-Yang Y Liao, Jianzhi Zhang
    posted to evolution expression gene mammal rate by dpollard to the group EisenLab on 2006-03-21 18:59:02 as *** along with 5 people dragonrez aprasad djkt cjeans emarker
  • Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms.
    Bioinformatics (9 March 2006)
    by Gaëlle Lelandais, Pierre Vincens, Anne Badel-Chagnon, Stéphane Vialette, Claude Jacq, Serge Hazout
    posted to evolution expression gene method network by dpollard to the group EisenLab on 2006-03-21 18:55:30 as ** along with 1 person wnpx
  • Gene expression and molecular evolution
    Current Opinion in Genetics & Development, Vol. 11, No. 6. (1 December 2001), pp. 660-666.
    by Hiroshi Akashi
    posted to evolution expression gene by dpollard to the group EisenLab on 2006-03-21 18:47:46 as *** along with 1 person echinotrix
  • Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia
    Nature, Vol. 439, No. 7077. (February 2006), pp. 728-732.
    by Jeremy A Lynch, Ava E Brent, David S Leaf, Anne, Claude Desplan
    posted to anterior expression maternal nasonia posterior wasp by indigoviolet to the group EisenLab on 2006-02-26 00:55:40 as *** along with 1 person emilyhare
  • Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development.
    Proc Natl Acad Sci U S A (5 December 2005)
    by A Aziz A Aboobaker, Pavel Tomancak, Nipam Patel, Gerald M M Rubin, Eric C C Lai
    posted to drosophila expression mirna patterns by emilyhare to the group EisenLab on 2006-01-13 18:26:00 as ** along with 1 person tardigrade
  • PLoS Genetics: Maternal Expression Relaxes Constraint on Innovation of the Anterior Determinant, bicoid
    posted to bicoid constraint drosophila expression innovation maternal by indigoviolet to the group EisenLab on 2005-11-15 23:01:38 as read along with 1 person emilyhare
  • Genome-wide gene expression in response to parasitoid attack in Drosophila.
    Genome Biol, Vol. 6, No. 11. (2005)
    by B Wertheim, AR Kraaijeveld, E Schuster, E Blanc, M Hopkins, SD Pletcher, MR Strand, L Partridge, HC Godfray
    posted to drosophila expression gene response by dpollard to the group EisenLab on 2005-11-15 20:29:57 as ** along with 1 person knightjar
  • Bicoid determines sharp and precise target gene expression in the Drosophila embryo.
    Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898.
    by O Crauk, N Dostatni
    posted to bicoid drosophila embryo expression factor gene gradient target transcription by indigoviolet to the group EisenLab on 2005-11-14 04:18:04 as *** along with 4 people imouthesmp mystery balicea emptyhb
  • A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression
    Nature, Vol. 438, No. 7065., pp. 220-223.
    by Scott A Rifkin, David Houle, Junhyong Kim, Kevin P White
    posted to evolution expression gene mutation by indigoviolet to the group EisenLab on 2005-11-13 02:56:41 as **** along with 8 people dayjm dpollard adepace johncumbers djkt mimulus_99 caseybrown emptyhb
  • Systematic determination of patterns of gene expression during Drosophila embryogenesis.
    Genome Biol, Vol. 3, No. 12. (2002)
    by P Tomancak, A Beaton, R Weiszmann, E Kwan, S Shu, SE Lewis, S Richards, M Ashburner, V Hartenstein, SE Celniker, GM Rubin
    posted to drosophila embryogenesis expression gene in-situ patterns by indigoviolet to the group EisenLab on 2005-11-13 02:24:09 as read along with 6 people and 1 group roys briann RMGraze eukfn wrowell dlmace Cline_lab
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