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Group: EisenLab - with tag model [11 articles]

Recent papers posted by members of the EisenLab group with tag model
  • Mutational equilibrium model of genome size evolution.
    Theor Popul Biol, Vol. 61, No. 4. (June 2002), pp. 531-544.
    by DA Petrov
    posted to genome_architecture genome_size indels model by dpollard to the group EisenLab on 2007-11-14 21:10:36 as ** along with 3 people operon aprasad timflutre
  • (Re)modeling the transcriptional enhancer
    Nature Genetics, Vol. 38, No. 10. (October 2006), pp. 1102-1103.
    by Marc S Halfon
    posted to model cis-regulatory by Stew to the group EisenLab on 2007-09-18 05:20:58 as **
  • Enhancer Responses to Similarly Distributed Antagonistic Gradients in Development
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e84.
    by Robert P Zinzen, Dmitri Papatsenko
    posted to model gene_expression expression_pattern development by dpollard to the group EisenLab on 2007-05-31 23:09:07 as *** along with 1 person adepace
  • Pre-Steady-State Decoding of the Bicoid Morphogen Gradient
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e46.
    by Sven Bergmann, Oded Sandler, Hila Sberro, Sara Shnider, Eyal Schejter, Ben-Zion Shilo, Naama Barkai
    posted to pattern model in_depth expression eisen_journal_club drosophila by dpollard to the group EisenLab on 2007-05-25 20:00:19 as read along with 3 people emilyhare adepace lusk
  • A stochastic model for the evolution of transcription factor binding site abundance.
    J Theor Biol (7 March 2007)
    by Günter P P Wagner, Wolfgang Otto, Vincent Lynch, Peter F F Stadler
    posted to turnover model binding_site by dpollard to the group EisenLab on 2007-05-23 01:02:56 as ***** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory
    BMC Bioinformatics, Vol. 8 (23 January 2007), 20.
    by Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J Ortoleva
    posted to transcription network model by dpollard to the group EisenLab on 2007-02-01 19:52:23 as ** along with 3 people aswin shigepong bertelsen
  • Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies.
    Mol Biol Evol, Vol. 15, No. 7. (July 1998), pp. 910-917.
    by AL Halpern, WJ Bruno
    posted to constraint evolution model motif mutation phylogeny selection by dpollard to the group EisenLab on 2006-11-07 00:11:19 as read along with 1 person lusk
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as read
  • A Drosophila model for age-associated changes in sleep:wake cycles.
    Proc Natl Acad Sci U S A (28 August 2006)
    by Kyunghee Koh, Joshua M M Evans, Joan C C Hendricks, Amita Sehgal
    posted to ageing model by brant to the group EisenLab on 2006-09-13 21:40:03 as **
  • MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
    BMC Bioinformatics, Vol. 7 (08 June 2006), 292.
    by Jun Wang, Peter D Keightley, Toby Johnson
    posted to alignment evolution indel model by dpollard to the group EisenLab on 2006-06-16 20:34:32 as *** along with 3 people Ayest papamicd bozdagd
  • MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
    Genome Biol, Vol. 5, No. 12. (2004)
    by AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
    posted to alignments binding conserved evolutionary factor model monkey multiple site transcription by indigoviolet to the group EisenLab on 2005-11-13 03:10:05 as read along with 4 people and 1 group tuck lusk Garamonfok cisevol cis-regulatory-evolution
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