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Group: EisenLab - with tag review [43 articles]

Recent papers posted by members of the EisenLab group with tag review
  • Genome annotation: from sequence to biology.
    Nat Rev Genet, Vol. 2, No. 7. (July 2001), pp. 493-503.
    by L Stein
    posted to gene-prediction review by indigoviolet to the group EisenLab on 2007-12-03 10:19:03 as ** along with 1 person dullhunk
  • Computational prediction of eukaryotic protein-coding genes.
    Nat Rev Genet, Vol. 3, No. 9. (September 2002), pp. 698-709.
    by MQ Zhang
    posted to gene-prediction review by indigoviolet to the group EisenLab on 2007-12-03 10:13:40 as ** along with 3 people and 2 groups dchughes GustavoLacerda wenhan G4ID Genetics-of-Gambling
  • Whole-genome re-sequencing
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 545-552.
    by David R Bentley
    posted to review sequencing technology by indigoviolet to the group EisenLab on 2007-12-03 04:10:38 as ** along with 4 people and 2 groups dchughes azazello jo_davies kmdaily G4ID Genetics-of-Gambling
  • Genome annotation past, present, and future: how to define an ORF at each locus.
    Genome Res, Vol. 15, No. 12. (December 2005), pp. 1777-1786.
    by MR Brent
    posted to gene-prediction review by indigoviolet to the group EisenLab on 2007-11-28 10:50:42 as ** along with 3 people textoris Ayest wenhan
  • Computational approaches to gene prediction.
    J Microbiol, Vol. 44, No. 2. (April 2006), pp. 137-144.
    by JH Do, DK Choi
    posted to gene-prediction review by indigoviolet to the group EisenLab on 2007-11-28 01:24:00 as ** along with 1 person GustavoLacerda
  • What is a hidden Markov model?
    Nat Biotechnol, Vol. 22, No. 10. (October 2004), pp. 1315-1316.
    by SR Eddy
    posted to computational-biology hidden-markov-model review by indigoviolet to the group EisenLab on 2007-11-27 09:42:22 as ** along with 6 people brian aprasad timflutre berthoums mailund dullhunk
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to gene-prediction review by indigoviolet to the group EisenLab on 2007-11-27 09:00:33 as ** along with 7 people and 2 groups jyuh dchughes wenhan zwang cabbagezs nklee ale G4ID Genetics-of-Gambling
  • Which evolutionary processes influence natural genetic variation for phenotypic traits?
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 845-856.
    by Thomas Mitchell-Olds, John H Willis, David B Goldstein
    posted to molecular_evolution phenotypic_evolution population_genetics review by cwbrown to the group EisenLab on 2007-11-08 00:35:36 as ** along with 2 people zwang ryanraaum
  • Chromatin remodeling: insights and intrigue from single-molecule studies
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 989-996.
    by Bradley R Cairns
    posted to chromatin chromatin_remodeling review single_molecule by cwbrown to the group EisenLab on 2007-11-07 00:21:04 as ** along with 3 people and 1 group Petersarkies zhlei skoch3 Koch_Lab
  • Gene regulation through nuclear organization
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 1049-1055.
    by Tom Sexton, Heiko Schober, Peter Fraser, Susan M Gasser
    posted to chromatin nuclear_organization review by cwbrown to the group EisenLab on 2007-11-07 00:19:33 as ** along with 2 people harry_fht sebastien_vigneau
  • Developmental biology: A ten per cent solution
    Nature, Vol. 448, No. 7152. (25 July 2007), pp. 420-421.
    by John Reinitz
    posted to expression_pattern modeling review by dpollard to the group EisenLab on 2007-11-06 05:08:34 as read
  • The enhanceosome and transcriptional synergy.
    Cell, Vol. 92, No. 1. (9 January 1998), pp. 5-8.
    by M Carey
    posted to enhanceosome review transcription_factor by dpollard to the group EisenLab on 2007-10-31 20:42:02 as ***
  • Enhanceosomes.
    Curr Opin Genet Dev, Vol. 11, No. 2. (April 2001), pp. 205-208.
    by M Merika, D Thanos
    posted to enhanceosome review transcription_factor by dpollard to the group EisenLab on 2007-10-31 20:41:32 as ***
  • Context-dependent transcription: all politics is local.
    Gene, Vol. 313 (14 August 2003), pp. 43-57.
    by M Alvarez, SJ Rhodes, JP Bidwell
    posted to enhanceosome review transcription_factor by dpollard to the group EisenLab on 2007-10-31 20:40:56 as ***
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to review prediction cis-regulatory by Stew to the group EisenLab on 2007-09-18 18:26:40 as read along with 16 people and 7 groups icases ana chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen nklee jdiezperezj ArtemPankin mariakmejia isimpson structural_bioinformatics Bioinformatics G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • Computational prediction of transcription-factor binding site locations.
    Genome Biol, Vol. 5, No. 1. (2003)
    by ML Bulyk
    posted to review prediction clustering cis-regulatory by Stew to the group EisenLab on 2007-09-17 20:40:18 as ** along with 6 people kaarsinogen lusk nklee yevishere xili03 aalibes
  • The evolutionary significance of cis-regulatory mutations
    Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216.
    by Gregory A Wray
    posted to review by brant to the group EisenLab on 2007-08-18 00:31:35 as ** along with 6 people and 3 groups dpollard dchughes lusk mimulus_99 cisevol emptyhb G4ID Genetics-of-Gambling cis-regulatory-evolution
  • The many faces of sequence alignment.
    Brief Bioinform, Vol. 6, No. 1. (March 2005), pp. 6-22.
    by S Batzoglou
    posted to review alignment by dpollard to the group EisenLab on 2007-08-02 01:04:27 as read along with 4 people and 1 group balajis sdvillal gjuggler yoanjacquemin Bioinformatics
  • Taste and pheromone perception in the fruit fly Drosophila melanogaster.
    Pflugers Arch, Vol. 454, No. 5. (August 2007), pp. 735-747.
    by ML Ebbs, H Amrein
    posted to tase smell review olfactory gustatory drosophila by Stew to the group EisenLab on 2007-08-02 00:52:06 as read
  • Different words, same meaning: understanding the languages of the genome.
    Trends Genet (27 September 2006)
    by Greg Elgar
    posted to review prediction elgar cis-regulatory by Stew to the group EisenLab on 2007-07-27 22:32:32 as read along with 2 people and 4 groups nickluscombe WJST EBI-regulation asthma humangenetics SNP
  • Evaluating the role of natural selection in the evolution of gene regulation
    Heredity, Vol. aop, No. current.
    by JC Fay, PJ Wittkopp
    posted to review regulatory_evolution natural_selection by dpollard to the group EisenLab on 2007-06-14 23:52:58 as *** along with 4 people and 1 group djkt cisevol emptyhb gjuggler cis-regulatory-evolution
  • THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
    Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.
    by Hopi E Hoekstra, Jerry A Coyne
    posted to review regulatory_evolution evo_devo cis_vs_trans adaptation by dpollard to the group EisenLab on 2007-06-14 23:50:07 as **** along with 12 people and 1 group gjuggler stevanspringer mcphee balicea bpcusack TaqSys epigenetics jayster4 mimulus_99 mjoach kndiaye rvosa FAB-lab
  • Computational and experimental approaches for modeling gene regulatory networks.
    Curr Pharm Des, Vol. 13, No. 14. (2007), pp. 1415-1436.
    by J Goutsias, NH Lee
    posted to review regulatory_network modeling method experimental computational by dpollard to the group EisenLab on 2007-06-14 23:48:35 as **
  • Colloquium Papers: Emerging principles of regulatory evolution.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.
    by B Prud'homme, N Gompel, SB Carroll
    posted to review regulatory_evolution evolution cis_regulatory_elements by dpollard to the group EisenLab on 2007-06-14 23:47:29 as *** along with 3 people and 1 group blobbybirdman cisevol emptyhb cis-regulatory-evolution
  • The stars and stripes of animal bodies: evolution of regulatory elements mediating pigment and bristle patterns in Drosophila.
    Trends Genet (10 May 2007)
    by Pat Simpson
    posted to review morphological_evolution drosophila cis_regulatory_elements by dpollard to the group EisenLab on 2007-06-13 22:25:39 as **
  • Morpheus Unbound: Reimagining the Morphogen Gradient
    Cell, Vol. 128, No. 2. (26 January 2007), pp. 245-256.
    by Arthur D Lander
    posted to review morphogen by brant to the group EisenLab on 2007-02-04 00:15:49 as ** along with 2 people shh nicholasflann
  • Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 104-115.
    by Christian Lanctot, Thierry Cheutin, Marion Cremer, Giacomo Cavalli, Thomas Cremer
    posted to review regulation genome architecture by emilyhare to the group EisenLab on 2007-01-18 20:14:06 as ** along with 7 people and 2 groups dchughes margaritis tenpils massivemayhem mdimon echinotrix inesdesantiago G4ID Genetics-of-Gambling
  • Heart development in Drosophila
    Seminars in Cell & Developmental Biology, Vol. In Press, Corrected Proof
    by Ye Tao, Robert A Schulz
    posted to review heart drosophila by emilyhare to the group EisenLab on 2007-01-16 23:04:57 as ***
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as read
  • Quantitative models of developmental pattern formation.
    Dev Cell, Vol. 11, No. 3. (September 2006), pp. 289-300.
    by GT Reeves, CB Muratov, T Schüpbach, SY Shvartsman
    posted to cis_regulatory_elements development expression_pattern modeling review by brant to the group EisenLab on 2006-09-14 07:47:08 as *** along with 1 person dpollard
  • Chromatin Insulators.
    Annu Rev Genet (5 September 2006)
    by Lourdes Valenzuela, Rohinton T T Kamakaka
    posted to chromatin insulator review by brant to the group EisenLab on 2006-09-13 14:18:01 as *** along with 1 person dpollard
  • Variation within and among species in gene expression: raw material for evolution
    Molecular Ecology, Vol. 15, No. 5. (April 2006), pp. 1197-1211.
    by Andrew Whitehead, Douglas L Crawford
    posted to evolution expression gene review by emilyhare to the group EisenLab on 2006-07-11 21:31:43 as ** along with 1 person RMGraze
  • Functional evo-devo
    Trends in Ecology & Evolution, Vol. In Press, Corrected Proof
    by Casper J Breuker, Vincent Debat, Christian P Klingenberg
    posted to development evolution review by emilyhare to the group EisenLab on 2006-07-06 19:43:11 as ** along with 3 people and 2 groups dchughes anatiferous chrys G4ID Genetics-of-Gambling
  • Genomics of the evolutionary process
    Trends in Ecology & Evolution, Vol. 21, No. 6. (June 2006), pp. 316-321.
    by Andrew G Clark
    posted to comparative genomic review by dpollard to the group EisenLab on 2006-06-16 21:02:30 as *** along with 6 people and 3 groups balicea dchughes rabu brettc djkt sunye G4ID evo-devo Genetics-of-Gambling
  • Genetic variation in human gene expression.
    Mamm Genome (12 June 2006)
    by Emmanouil T Dermitzakis, Barbara E Stranger
    posted to expression gene review variation by dpollard to the group EisenLab on 2006-06-16 21:00:17 as ** along with 4 people and 1 group psique cmm noano djkt FAB-lab
  • A survey of motif discovery methods in an integrated framework
    Biology Direct, Vol. 1, No. 1. (06 April 2006), 11.
    by Geir K Sandve, Finn Drabløs
    posted to discovery motif review by dpollard to the group EisenLab on 2006-04-08 23:19:50 as ** along with 6 people aprasad samal yevishere csdhwang idonaldson yoonk
  • Eukaryotic evolution, changes and challenges
    Nature, Vol. 440, No. 7084., pp. 623-630.
    by Martin T Embley, William Martin
    posted to evolution review by emilyhare to the group EisenLab on 2006-04-05 00:29:44 as ** along with 4 people and 3 groups dchughes cmm dandaman cmzmasek FAB-lab G4ID Genetics-of-Gambling
  • Mosaic and regulative development: two faces of one coin
    Current Biology, Vol. 16, No. 7. (4 April 2006), pp. R236-R239.
    by Peter A Lawrence, Michael Levine
    posted to development review by emilyhare to the group EisenLab on 2006-04-04 21:06:59 as **
  • Digital genetics: unravelling the genetic basis of evolution
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 109-118.
    by Christoph Adami
    posted to digital evolution review by emilyhare to the group EisenLab on 2006-01-19 19:36:40 as ** along with 3 people and 1 group timflutre seahawk27 dlobo GEB
  • Current Biology -- Moussian and Roth
    posted to dv patterning review by emilyhare to the group EisenLab on 2006-01-18 00:48:41 as **
  • Modulating Hox gene functions during animal body patterning
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 893-904.
    by Joseph C Pearson, Derek Lemons, William Mcginnis
    posted to hox review by emilyhare to the group EisenLab on 2006-01-13 19:15:12 as read along with 3 people and 1 group xico BioMaxi brant WetBiology
  • Morphogens: Precise Outputs from a Variable Gradient
    Current Biology, Vol. 16, No. 1. (10 January 2006), pp. R29-R31.
    by Gozde Yucel, Stephen Small
    posted to morphogen review by brant to the group EisenLab on 2006-01-13 02:15:02 as ** along with 2 people emilyhare adepace
  • The interpretation of morphogen gradients
    Development, Vol. 133, No. 3. (1 February 2006), pp. 385-394.
    by Hilary L Ashe, James Briscoe
    posted to morphogen review by brant to the group EisenLab on 2006-01-13 02:00:11 as ** along with 3 people eldan emilyhare shh
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