Group: EisenLab - with tag transcription [40 articles] Export

Recent papers posted by members of the EisenLab group with tag transcription

	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to binding binding-sites factor motif phylogen prediction tfbs transcription by Stew to the group EisenLab on 2009-06-17 15:29:29 as along with 9 people and 2 groups bsamal dquest marti Lombardo_7 megraw operon nuin AlexBateman scjparker Bioinformatics - CRUK Journal picks
	Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster [My Copy] Genetics (3 February 2008), genetics.107.082032. by Patricia J. Wittkopp, Belinda K. Haerum, Andrew G. Clark posted to cis-regulatory transcription by stajich to the group EisenLab on 2008-02-04 08:13:01 as along with 5 people and 2 groups brant djkt mimulus_99 dpollard caseybrown cis-regulatory-evolution RockmanLab
	Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 42. (16 October 2007), pp. 16615-16620. by C. Beisel, A. Buness, I. M. Roustan-Espinosa, et al.B. Koch, S. Schmitt, S. A. Haas, M. Hild, T. Katsuyama, R. Paro posted to chip_chip chromatin_modification drosophila transcription by dpollard to the group EisenLab on 2007-10-25 01:52:45 as
	Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo [My Copy] PLoS Biology, Vol. 5, No. 5. (1 May 2007), e117. by Stefano De Renzis, Olivier Elemento, Saeed Tavazoie, Eric F. Wieschaus posted to zygotic transcription by brant to the group EisenLab on 2007-07-24 22:04:46 as along with 2 people dpollard epigenetics
	Genetic reconstruction of a functional transcriptional regulatory network. [My Copy] Nat Genet (8 April 2007) by Zhanzhi Hu, Patrick J J. Killion, Vishwanath R R. Iyer posted to transcription round_robin network matt_presented epistasis eisen_journal_club by dpollard to the group EisenLab on 2007-06-04 22:39:00 as along with 15 people and 5 groups sergiun TheresaNiederberger akraemer behindtherabbit ptrobajo xico nickluscombe zwang lizabeth dejori xingxu naegele czeller mapplab siebert Bioinformatics WetBiology EBI-regulation ic4 generif_paper
	A SNP in a half-binding site creates p53 and estrogen receptor control of VEGFR-1. [My Copy] Mol Cell Biol (22 January 2007) by Daniel Menendez, Alberto Inga, Joyce Snipe, Oliver Krysiak, Gilbert Schönfelder, Michael A A. Resnick posted to transcription polymorphism binding_site by dpollard to the group EisenLab on 2007-02-01 19:55:01 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory [My Copy] BMC Bioinformatics, Vol. 8 (23 January 2007), 20. by Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva posted to transcription network model by dpollard to the group EisenLab on 2007-02-01 19:52:23 as along with 3 people aswin shigepong bertelsen
	The Proteasome Restricts Permissive Transcription at Tissue-Specific Gene Loci in Embryonic Stem Cells [My Copy] Cell, Vol. 127, No. 7. (29 December 2006), pp. 1375-1388. by Henrietta Szutorisz, Andrew Georgiou, Laszlo Tora, Niall Dillon posted to transcription stem_cells proteasome by brant to the group EisenLab on 2007-01-26 02:22:29 as along with 3 people inesdesantiago jjray tdmckee
	Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks. [My Copy] PLoS Comput Biol, Vol. 2, No. 12. (22 December 2006) by Christopher E E. Hart, Eric Mjolsness, Barbara J J. Wold posted to yeast transcription network by dpollard to the group EisenLab on 2007-01-19 16:58:55 as along with 1 person mhucka
	Phenotypic Consequences of Promoter-Mediated Transcriptional Noise [My Copy] Molecular Cell, Vol. 24, No. 6. (28 December 2006), pp. 853-865. by William J. Blake, Gabor Balazsi, Michael A. Kohanski, et al.Farren J. Isaacs, Kevin F. Murphy, Yina Kuang, Charles R. Cantor, David R. Walt, James J. Collins posted to transcription noise by emilyhare to the group EisenLab on 2007-01-17 04:20:21 as along with 3 people dbikard timflutre margaritis
	Transcription of bxd Noncoding RNAs Promoted by Trithorax Represses Ubx in cis by Transcriptional Interference [My Copy] Cell, Vol. 127, No. 6. (15 December 2006), pp. 1209-1221. by S. Petruk, Y. Sedkov, K. Riley, et al.J. Hodgson, F. Schweisguth, S. Hirose, J. Jaynes, H. Brock, A. Mazo posted to transcription regulation ncrna by emilyhare to the group EisenLab on 2007-01-16 23:03:58 as along with 4 people galka8_diploma maximilianh mtagaya gsrats
	Position specific variation in the rate of evolution in transcription factor binding sites. [My Copy] BMC Evol Biol, Vol. 3, No. 1. (28 August 2003) by A. M. Moses, D. Y. Chiang, M. Kellis, E. S. Lander, M. B. Eisen posted to binding conserved constraint evolution noncoding pattern phylogeny prediction pwm rate selection specific transcription by dpollard to the group EisenLab on 2006-11-07 00:22:07 as along with 6 people and 1 group briann adepace lusk nklee cisevol emptyhb cis-regulatory-evolution
	Transcriptional repression in the Drosophila embryo. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262. by S. Gray, H. Cai, S. Barolo, M. Levine posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as
	Dynamics of heat shock factor association with native gene loci in living cells [My Copy] Nature, Vol. 442, No. 7106. (23 August 2006), pp. 1050-1053. by Jie Yao, Katherine M. Munson, Watt W. Webb, John T. Lis posted to subnuclear_localization transcription by brant to the group EisenLab on 2006-09-02 20:14:15 as along with 1 person skoch3
	Regulatory Blueprint for a Chordate Embryo [My Copy] Science, Vol. 312, No. 5777. (26 May 2006), pp. 1183-1187. by Kaoru S. Imai, Michael Levine, Nori Satoh, Yutaka Satou posted to ciona network transcription by emilyhare to the group EisenLab on 2006-07-13 01:13:08 as along with 5 people and 2 groups nirfriedman nickluscombe noano dquest Auger EBI-regulation Dead 60's
	Transcriptional Pulsing of a Developmental Gene [My Copy] Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 1018-1025. by Jonathan R. Chubb, Tatjana Trcek, Shailesh M. Shenoy, Robert H. Singer posted to transcription by emilyhare to the group EisenLab on 2006-07-12 00:34:31 as along with 3 people qfwills margaritis jjray
	Regulation of the immunoglobulin heavy chain locus expression at the phylogenetic level of a bony fish: Transcription factor interaction with two variant octamer motifs. [My Copy] Gene (5 June 2006) by Jun-Ichi I. Hikima, Mara L L. Lennard, Melanie R R. Wilson, Norman W W. Miller, Gregory W W. Warr posted to binding grammar motif promoter spacing transcription by dpollard to the group EisenLab on 2006-06-16 20:44:19 as
	Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations. [My Copy] J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945. by S. Gunewardena, P. Jeavons, Z. Zhang posted to binding motif prediction structure transcription by dpollard to the group EisenLab on 2006-06-16 20:40:23 as along with 2 people samal nklee
	Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941. by V. Mustonen, M. Lässig posted to binding evolution polymorphism promoter selection transcription turnover by dpollard to the group EisenLab on 2006-06-10 00:48:36 as along with 4 people and 1 group kaarsinogen lusk cisevol emptyhb cis-regulatory-evolution
	Computational Models for Neurogenic Gene Expression in the Drosophila Embryo. [My Copy] Curr Biol (1 June 2006) by Robert P P. Zinzen, Kate Senger, Mike Levine, Dmitri Papatsenko posted to drosophila expression network prediction transcription by dpollard to the group EisenLab on 2006-06-09 23:01:14 as along with 2 people and 1 group emilyhare klo TranscriptionalRegulationWithThermodynamicModels
	Coactivator cross-talk specifies transcriptional output. [My Copy] Genes Dev, Vol. 20, No. 11. (1 June 2006), pp. 1458-1469. by M. T. Marr, Y. Isogai, K. J. Wright, R. Tjian posted to coactivator drosophila regulation transcription by dpollard to the group EisenLab on 2006-06-09 22:54:57 as along with 1 person myrtilus
	Flexible promoter architecture requirements for coactivator recruitment [My Copy] BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16. by Derek Y. Chiang, David A. Nix, Ryan K. Shultzaberger, Audrey P. Gasch, Michael B. Eisen posted to binding expression grammar promoter spacing transcription yeast by dpollard to the group EisenLab on 2006-05-21 05:08:26 as along with 2 people JustinCrocker postrational
	Evolutionary turnover of mammalian transcription start sites. [My Copy] Genome Res (10 May 2006) by Martin C C. Frith, Jasmina Ponjavic, David Fredman, et al.Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayshizaki, Albin Sandelin posted to alignment conserved evolution gene mammal promoter transcription turnover vertebrate by dpollard to the group EisenLab on 2006-05-12 17:41:10 as along with 5 people and 2 groups galka8_diploma cmm jsnoddy cisevol gjuggler FAB-lab cis-regulatory-evolution
	Evaluating phylogenetic footprinting for human-rodent comparisons. [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437. by T. Sauer, E. Shelest, E. Wingender posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard to the group EisenLab on 2006-05-01 22:45:46 as
	Periodicity of SNP distribution around transcription start sites. [My Copy] BMC Genomics, Vol. 7, No. 1. (3 April 2006) by Koichiro Higasa, Kenshi Hayashi posted to chimp human nucleosome promoter snps transcription by dpollard to the group EisenLab on 2006-04-08 23:07:47 as along with 1 person samal
	Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex. [My Copy] Dev Biol (16 March 2006) by Omar S S. Akbari, Adam Bousum, Esther Bae, Robert A A. Drewell posted to drosophila hox mechanism regulation transcription by dpollard to the group EisenLab on 2006-04-02 23:06:26 as
	Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. [My Copy] Genes Dev (17 March 2006) by Jay Z Z. Parrish, Michael D D. Kim, Lily Yeh Y. Jan, Yuh Nung N. Jan posted to binding brain development drosophila nervous neuro system transcription by dpollard to the group EisenLab on 2006-03-31 23:44:47 as
	Genome-wide expression dynamics during mouse embryonic development reveal similarities to Drosophila development. [My Copy] Dev Biol, Vol. 288, No. 2. (15 December 2005), pp. 595-611. by R. A. Wagner, R. Tabibiazar, A. Liao, T. Quertermous posted to conserved development drosophila embryo expression gene insect mouse pattern transcription vertebrate by dpollard to the group EisenLab on 2006-03-21 20:22:42 as
	The design of transcription-factor binding sites is affected by combinatorial regulation. [My Copy] Genome Biol, Vol. 6, No. 12. (2005) by Y. Bilu, N. Barkai posted to binding grammar transcription yeast by dpollard to the group EisenLab on 2006-03-21 20:03:38 as along with 7 people chrn tabu samal adepace lewbin nklee xili03
	Integrating genomic data to predict transcription factor binding. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 83-94. by D. T. Holloway, M. Kon, C. DeLisi posted to binding data genomic integration prediction transcription by dpollard to the group EisenLab on 2006-03-21 19:53:19 as along with 3 people and 1 group malcook adsmitty nklee SIMR bioinformatics
	Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes. [My Copy] Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-351. by C. R. Landry, J. Oh, D. L. Hartl, D. Cavalieri posted to gene genetic multi-copy non-essential placticity transcription variation yeast by dpollard to the group EisenLab on 2006-03-21 19:21:02 as along with 4 people jbsaltz caseybrown aubinhon klo
	Defining the sequence-recognition profile of DNA-binding molecules [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 4. (24 January 2006), pp. 867-872. by Christopher L. Warren, Natasha C. S. Kratochvil, Karl E. Hauschild, et al.Shane Foister, Mary L. Brezinski, Peter B. Dervan, George N. Phillips, Aseem Z. Ansari posted to binding factor selex transcription by indigoviolet to the group EisenLab on 2006-02-26 00:56:38 as along with 5 people absterga emilyhare samal stsaft blobbybirdman
	Noncoding RNAs of Trithorax Response Elements Recruit Drosophila Ash1 to Ultrabithorax. [My Copy] Science, Vol. 311, No. 5764. (24 February 2006), pp. 1118-1123. by T. Sanchez-Elsner, D. Gou, E. Kremmer, F. Sauer posted to cis-regulation drosophila geneexpression microrna transcription by indigoviolet to the group EisenLab on 2006-02-26 00:50:46 as along with 3 people galka8_diploma mtagaya gsrats
	Nup-PI: The Nucleopore-Promoter Interaction of Genes in Yeast [My Copy] Molecular Cell, Vol. 21, No. 3. (3 February 2006), pp. 379-391. by Manfred Schmid, Ghislaine Arib, Caroline Laemmli, Junichi Nishikawa, Therese Durussel, Ulrich K. Laemmli posted to nuclear-organization transcription by brant to the group EisenLab on 2006-02-05 13:28:14 as
	Filtering transcriptional noise during development: concepts and mechanisms [My Copy] Nature Reviews Genetics, Vol. 7, No. 1., pp. 34-44. by Alfonso M. Arias, Penelope Hayward posted to noise transcription by emilyhare to the group EisenLab on 2006-01-13 02:05:49 as along with 2 people dbikard margaritis
	Genome Biology \| Full text \| The design of transcription-factor binding sites is affected by combinatorial regulation [My Copy] posted to binding cis-regulation computational constraint factor transcription yeast by indigoviolet to the group EisenLab on 2005-12-06 03:51:51 as
	Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae [My Copy] Genes Dev., Vol. 19, No. 22. (15 November 2005), pp. 2695-2704. by Joseph A. Martens, Pei-Yun J. Wu, Fred Winston posted to cis-regulation enhancer geneexpression intergenic transcription yeast by indigoviolet to the group EisenLab on 2005-11-16 22:58:58 as along with 1 person dpollard
	Bicoid determines sharp and precise target gene expression in the Drosophila embryo. [My Copy] Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898. by O. Crauk, N. Dostatni posted to bicoid drosophila embryo expression factor gene gradient target transcription by indigoviolet to the group EisenLab on 2005-11-14 04:18:04 as along with 4 people imouthesmp mystery balicea emptyhb
	The T-box-encoding Dorsocross genes function in amnioserosa development and the patterning of the dorsolateral germ band downstream of Dpp. [My Copy] Development, Vol. 130, No. 14. (July 2003), pp. 3187-3204. by I. Reim, H. H. Lee, M. Frasch posted to development patterning tissue transcription by brant to the group EisenLab on 2005-11-13 18:50:00 as
	MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model. [My Copy] Genome Biol, Vol. 5, No. 12. (2004) by A. M. Moses, D. Y. Chiang, D. A. Pollard, V. N. Iyer, M. B. Eisen posted to alignments binding conserved evolutionary factor model monkey multiple site transcription by indigoviolet to the group EisenLab on 2005-11-13 03:10:05 as along with 4 people and 1 group tuck lusk Garamonfok cisevol cis-regulatory-evolution

Note: You may cite this page as: http://www.citeulike.org/group/652/tag/transcription

regulation	435
factor	236
review	196
network	167
yeast	166
chromatin	163
evolution	152
promoter	143
expression	133
drosophila	125
binding	109
rna	107
gene	106
for-the-review	95
biodegradation	90
elegans	83
nematode	80
celegans	79
c_elegans	78
caenorhabditis_elegans	78
wormbase	78
genomics	77
article	74
genome	73
polymerase	65
dna	63
motif	57
microarray	55
regulatory	55
epigenetics	52
cancer	51
microrna	51
networks	51
translation	49
bacteria	48
bioinformatics	48
human	48
elongation	47
histone	46
protein	46
transcriptome	46
prediction	45
factors	43
mrna	43
cloned_genes	42
gene_regulation	42
transcriptional-regulation	42
gene_expression	40
antisense	39
development	39
integration	37
initiation	35
methylation	35
nucleosome	35
genetics	33
site	33
gene-expression	32
noise	32
tfbs	31
conserved	30
model	30
trna	30
mouse	29
mirna	28
rnap	27
dna_sequence	26
activator	25
biology	25
chromosomes	25
splicing	25
transcription_regulation	25
activation	24
cell	24
analysis	23
mediator	23
ncrna	23
sequencing	23
tf	23
transcription_factor	23
cisreg	22
sequence	22
imprinting	21
replication	21
breast	20
differentiation	20
genome-wide	20
mammals	20
receptor	20
remodeling	20
chip-chip	19
genetic	19
heat_shock	19
hematopoiesis	19
mathematical_model	19
metabolism	19
repression	19
structure	19
chip	18
combinatorial	18
nucleus	18

Group: EisenLab - with tag transcription [40 articles] Export

Related Tags