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Group: EisenLab - with tag variation [20 articles]

Recent papers posted by members of the EisenLab group with tag variation
  • Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast.
    Pac Symp Biocomput (2008), pp. 489-500.
    by RW Lusk, MB Eisen
    posted to affinity binding_site transcription_factor variation yeast by dpollard to the group EisenLab on 2008-02-01 06:19:09 as read along with 1 person and 1 group maximilianh cis-regulatory-evolution
  • Phenotypic Plasticity in Drosophila Pigmentation Caused by Temperature Sensitivity of a Chromatin Regulator Network
    PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e30.
    by Jean-Michel Gibert, Frédérique Peronnet, Christian Schlötterer
    posted to variation phenotype environmental by brant to the group EisenLab on 2007-03-28 02:03:53 as ** along with 1 person cwbrown
  • Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1341-1350.
    by Kevin P Byrne, Kenneth H Wolfe
    posted to variation turnover rate genome gene duplication by dpollard to the group EisenLab on 2007-03-26 08:01:28 as ** along with 2 people echinotrix stajich
  • Posttranscriptional Expression Regulation: What Determines Translation Rates?
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e57.
    by Regina Brockmann, Andreas Beyer, Jürgen J Heinisch, Thomas Wilhelm
    posted to variation translation_rate by dpollard to the group EisenLab on 2007-03-23 00:27:06 as ** along with 2 people dayjm gpalidwor
  • Genetics of global gene expression
    Nature Reviews Genetics, Vol. 7, No. 11., pp. 862-872.
    by Matthew V Rockman, Leonid Kruglyak
    posted to association_mapping eisen_journal_club eqtl gene_expression in_depth qtl variation by dpollard to the group EisenLab on 2007-03-15 00:55:53 as read along with 16 people and 9 groups jyuh tardigrade balicea dchughes nickluscombe neveaire aswin qfwills ealloza giovanni mlovell grahamc lp2 emarker natstreet mimulus_99 Biostatistics Computational-Genomics Bioinformatics Neuroscience G4ID EBI-regulation BioinfoCIPF GeschwindLab Genetics-of-Gambling
  • Conserved sequences and the evolution of gene regulatory signals.
    Curr Opin Genet Dev, Vol. 15, No. 6. (December 2005), pp. 628-633.
    by MD Adams
    posted to binding_site evolution regulatory_sequence transcription_factor turnover variation by dpollard to the group EisenLab on 2007-03-15 00:22:24 as *** along with 2 people cconboy lusk
  • Functional variation and evolution of non-coding DNA
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 559-564.
    by Christine P Bird, Barbara E Stranger, Emmanouil T Dermitzakis
    posted to evolution noncoding_dna regulatory_sequence variation by dpollard to the group EisenLab on 2007-03-15 00:18:50 as read along with 7 people and 3 groups dchughes adepace lusk sujaikumar candypmcg Stew cisevol G4ID Genetics-of-Gambling cis-regulatory-evolution
  • How repeatable are associations between polymorphisms in achaete-scute and bristle number variation in Drosophila?
    Genetics (4 February 2007)
    by Jonathan D D Gruber, Anne Genissel, Stuart J J Macdonald, Anthony D D Long
    posted to variation polymorphism bristle association by dpollard to the group EisenLab on 2007-02-10 01:26:51 as ** along with 1 person mimulus_99
  • Selection, recombination and demographic history in Drosophila miranda.
    Genetics (8 October 2006)
    by Doris Bachtrog, Peter Andolfatto
    posted to adaptive demography drosophila polymorphism protein recombination selection variation by dpollard to the group EisenLab on 2006-10-18 20:03:34 as ***
  • Cis-regulatory variations: A study of SNPs around genes showing cis-linkage in segregating mouse populations
    BMC Genomics, Vol. 7 (15 September 2006), 235.
    by Debraj Guhathakurta, Tao Xie, Manish Anand, Stephen W Edwards, Guoya Li, Susana Wang, Eric E Schadt
    posted to cis gene linkage mouse noncoding polymorphism regulation variation by dpollard to the group EisenLab on 2006-09-30 00:25:03 as *** along with 2 people adepace natstreet
  • Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification.
    Proc Natl Acad Sci U S A, Vol. 103, No. 38. (19 September 2006), pp. 14062-14067.
    by SI Lee, D Pe'er, AM Dudley, GM Church, D Koller
    posted to chromatin regulation variation by brant to the group EisenLab on 2006-09-22 08:12:14 as *** along with 5 people jasonflannick balajis adepace stajich lp2
  • An initial map of insertion and deletion (INDEL) variation in the human genome.
    Genome Res, Vol. 16, No. 9. (September 2006), pp. 1182-1190.
    by Ryan E E Mills, Christopher T T Luttig, Christine E E Larkins, Adam Beauchamp, Circe Tsui, W Stephen S Pittard, Scott E E Devine
    posted to human indel polymorphism variation by dpollard to the group EisenLab on 2006-09-06 01:05:45 as *** along with 3 people and 1 group bpb ealloza jackjackjjj BioinfoCIPF
  • Estimating Selection Pressures from Limited Comparative Data.
    Mol Biol Evol (5 June 2006)
    by Joshua B B Plotkin, Jonathan Dushoff, Michael M M Desai, Hunter B B Fraser
    posted to evolution gene method selection variation by dpollard to the group EisenLab on 2006-07-13 19:10:38 as *** along with 4 people friendpine bnchakraborty djkt BioNica
  • Genetic variation in human gene expression.
    Mamm Genome (12 June 2006)
    by Emmanouil T Dermitzakis, Barbara E Stranger
    posted to expression gene review variation by dpollard to the group EisenLab on 2006-06-16 21:00:17 as ** along with 3 people and 1 group cmm noano djkt FAB-lab
  • Genomic Inferences of the cis-Regulatory Nucleotide Polymorphisms Underlying Gene Expression Differences between Drosophila melanogaster Mating Races.
    Mol Biol Evol (5 June 2006)
    by Naoki Osada, Michael H H Kohn, Chung-I I Wu
    posted to drosophila evolution expression polymorphism promoter speciation variation by dpollard to the group EisenLab on 2006-06-09 22:43:58 as *** along with 4 people emptyhb emilyhare adepace natstreet
  • Gene Regulation Divergence is a Major Contributor to the Evolution of Dobzhansky-Muller Incompatibilities between Species of Drosophila.
    Mol Biol Evol (6 June 2006)
    by Wilfried Haerty, Rama S S Singh
    posted to drosophila expression speciation variation by dpollard to the group EisenLab on 2006-06-09 22:28:09 as *** along with 2 people RMGraze ranb
  • Strong region-specific heterogeneity in base composition evolution on the Drosophila X chromosome.
    Genetics (17 March 2006)
    by Wen-Ya Y Ko, Shengfu Piao, Hiroshi Akashi
    posted to base composition drosophila evolution gene nonstationary rate reconstruction tree variation by dpollard to the group EisenLab on 2006-03-31 23:50:30 as *****
  • Origins of extrinsic variability in eukaryotic gene expression
    Nature (21 December 2005)
    by Dmitri Volfson, Jennifer Marciniak, William J Blake, Natalie Ostroff, Lev S Tsimring, Jeff Hasty
    posted to expression extrinsic gene noise variation yeast by dpollard to the group EisenLab on 2006-03-21 19:48:58 as ** along with 6 people jyuh bayesian balabu timflutre margaritis cjeans
  • Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-351.
    by CR Landry, J Oh, DL Hartl, D Cavalieri
    posted to gene genetic multi-copy non-essential placticity transcription variation yeast by dpollard to the group EisenLab on 2006-03-21 19:21:02 as *** along with 2 people caseybrown aubinhon
  • PLoS Computational Biology: Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp
    posted to adaptive evolution gene rate variation by dpollard to the group EisenLab on 2006-03-17 20:59:12 as **
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