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Group: Bioinformatics - library [3484 articles]

Recent papers posted by members of the Bioinformatics group
  • A new pheromone trail-based genetic algorithm for comparative genome assembly
    Nucl. Acids Res. (29 April 2008), gkn168.
    by Fangqing Zhao, Fanggeng Zhao, Tao Li, Donald A Bryant
    posted to genomics genome bioinformatics assembly by fqzhao to the group Bioinformatics on 2008-05-07 21:28:04 as read
  • Darwinian Evolution on a Chip
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e85.
    by Brian M Paegel, Gerald F Joyce
    posted to journal_club directed_evolution by barry to the group Bioinformatics on 2008-04-29 20:13:18 as **** along with 11 people and 1 group fdsayre cfleet stevanspringer operon xingxu Minty renatomilani TomQ phoenixzxl melting dlobo GEB
  • A Microtubule Interactome: Complexes with Roles in Cell Cycle and Mitosis
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e98.
    by Julian R Hughes, Ana M Meireles, Katherine H Fisher, Angel Garcia, Philip R Antrobus, Alan Wainman, Nicole Zitzmann, Charlotte Deane, Hiroyuki Ohkura, James G Wakefield
    posted to tubulin protein_protein mts by barry to the group Bioinformatics on 2008-04-29 19:37:04 as ** along with 1 person cdeane
  • Very fast empirical prediction and rationalization of protein pKa values.
    Proteins, Vol. 61, No. 4. (1 December 2005), pp. 704-721.
    by H Li, AD Robertson, JH Jensen
    posted to pka md_simulation bioinf_methods by barry to the group Bioinformatics on 2008-04-25 20:55:37 as ** along with 3 people sunhwan bicko sim82
  • notes Tracing evolutionary pressure
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 908-915.
    by Kai Ye, Gert Vriend, Adriaan P Ijzerman
    posted to bioinf_methods phylogeny protein_evolution protein_sequence residue_annotation by barry to the group Bioinformatics on 2008-04-11 19:13:22 as *** along with 1 person and 1 group sunhwan structural_bioinformatics
  • Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 279-290.
    by O Gevaert, S Van Vooren, B de Moor
    posted to bayesian integration literature microarray network text by frohike to the group Bioinformatics on 2008-04-07 14:49:29 as ** along with 1 person jfr
  • A Framework for Elucidating Regulatory Networks Based on Prior Information and Expression Data
    Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 240-248.
    by Olivier Gevaert, VAN Vooren, N Steve, DE Moor, T Bar
    posted to bayesian dream integration microarray network prior protein by frohike to the group Bioinformatics on 2008-04-07 14:48:50 as ** along with 1 person jyuh
  • Expression profiling to predict the clinical behaviour of ovarian cancer fails independent evaluation
    BMC Cancer, Vol. 8 (22 January 2008), 18.
    by Olivier Gevaert, Frank De Smet, Toon Van Gorp, Nathalie Pochet, Kristof Engelen, Frederic Amant, Bart De Moor, Dirk Timmerman, Ignace Vergote
    posted to cancer microarray ovarian platin platinum by frohike to the group Bioinformatics on 2008-04-07 14:48:20 as **
  • Prediction of ectopic pregnancy in women with a pregnancy of unknown location
    Ultrasound in Obstetrics and Gynecology, Vol. 29, No. 6. (June 2007), pp. 680-687.
    by Condous, , Van Calster, , Kirk, , Haider, , Timmerman, , Van Huffel, , Bourne,
    posted to clinical logistic pul regression by frohike to the group Bioinformatics on 2008-04-07 14:45:30 as **
  • Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
    Mol Syst Biol, Vol. 3 (10 July 2007)
    by Robert Schuetz, Lars Kuepfer, Uwe Sauer
    posted to coli escherichia flux by robertvandenberg to the group Bioinformatics on 2008-04-06 12:27:04 as ** along with 4 people alexg fishtank zwang Ema
  • Assessment of PLSDA cross validation
    Metabolomics, Vol. 4, No. 1. (31 March 2008), pp. 81-89.
    by Johan Westerhuis, Huub Hoefsloot, Suzanne Smit, Daniel Vis, Age Smilde, Ewoud van Velzen, John van Duijnhoven, Ferdi van Dorsten
    posted to cross-validation plsda validation by robertvandenberg to the group Bioinformatics on 2008-04-06 12:12:48 as **
  • A simple method for assessing sample sizes in microarray experiments.
    BMC Bioinformatics, Vol. 7 (2006)
    by R Tibshirani
    posted to microarray micro-array sample sampling size by robertvandenberg to the group Bioinformatics on 2008-04-05 10:15:21 as ** along with 4 people bertelsen jen_drake gpalidwor ugengma
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to genetic hapmap human snp variation by frohike to the group Bioinformatics on 2008-04-04 13:56:06 as ** along with 7 people and 1 group jyuh dchughes djkt lp2 ryanraaum xingxu psique parkinson's disease references
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
    posted to cdf by frohike to the group Bioinformatics on 2008-04-04 10:34:14 as ** along with 6 people bertelsen pcahan1 incovoma nicholso heliopais Montrachet
  • Extending pathways based on gene lists using InterPro domain signatures
    BMC Bioinformatics, Vol. 9 (04 January 2008), 3.
    by Florian Hahne, Alexander Mehrle, Dorit Arlt, Annemarie Poustka, Stefan Wiemann, Tim Beissbarth
    posted to geneset gsea interpro by frohike to the group Bioinformatics on 2008-04-04 10:26:10 as ** along with 2 people ealloza renatomilani
  • Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions.
    Nucleic Acids Res (16 March 2008)
    by Katleen De Preter, Roland Barriot, Frank Speleman, Jo Vandesompele, Yves Moreau
    posted to aberration chromosomal geneset gsea positional by frohike to the group Bioinformatics on 2008-04-04 10:20:24 as ** along with 2 people tmmurali bootsy
  • Computational methods for transcriptional regulation.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by ED Siggia
    posted to microarrays review transcription_factor by barry to the group Bioinformatics on 2008-04-03 19:42:48 as ** along with 3 people and 1 group bertelsen dpollard koller EisenLab
  • Why we need a noninvasive diagnostic test for minimal to mild endometriosis with a high sensitivity.
    Gynecol Obstet Invest, Vol. 62, No. 3. (2006), pp. 136-138.
    by TM D'Hooghe, AM Mihalyi, P Simsa, CK Kyama, K Peeraer, P De Loecker, L Meeuwis, L Segal, C Meuleman
    posted to diagnosis endometriosis by frohike to the group Bioinformatics on 2008-04-01 13:25:49 as **
  • ProteinChip technology is a useful method in the pathogenesis and diagnosis of endometriosis: a preliminary study.
    Fertil Steril, Vol. 86, No. 1. (July 2006), pp. 203-209.
    by CM Kyama, D T'Jampens, A Mihalyi, P Simsa, S Debrock, E Waelkens, B Landuyt, C Meuleman, V Fulop, JM Mwenda, TM D'Hooghe
    posted to diagnosis endometriosis proteomics seldi by frohike to the group Bioinformatics on 2008-04-01 13:25:22 as **
  • Global gene analysis of late secretory phase, eutopic endometrium does not provide the basis for a minimally invasive test of endometriosis.
    Hum Reprod (19 March 2008)
    by J R A R Sherwin, A M M Sharkey, A Mihalyi, P Simsa, R D D Catalano, T M M D'Hooghe
    posted to endometriosis microarray secretory by frohike to the group Bioinformatics on 2008-04-01 13:22:57 as **
  • Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by E Edelman, A Porrello, J Guinney, B Balakumaran, A Bild, PG Febbo, S Mukherjee
    posted to enrichment gsea microarray pathway sample by frohike to the group Bioinformatics on 2008-04-01 10:19:18 as ** along with 5 people srp33 dragonrez jfr heliopais barriot
  • Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants.
    Nat Genet, Vol. 39, No. 11. (November 2007), pp. 1329-1337.
    by , Paul R R Burton, David G G Clayton, Lon R R Cardon, Nick Craddock, Panos Deloukas, Audrey Duncanson, Dominic P P Kwiatkowski, Mark I I McCarthy, Willem H H Ouwehand, Nilesh J J Samani, John A A Todd, Peter Donnelly Chair, , Jeffrey C C Barrett, Paul R R Burton, Dan Davison, Peter Donnelly, Doug Easton, David M M Evans, Hin-Tak T Leung, Jonathan L L Marchini, Andrew P P Morris, Chris Ca C Spencer, Martin D D Tobin, Lon R R Cardon, David G G Clayton, , Antony P P Attwood, James P P Boorman, Barbara Cant, Ursula Everson, Judith M M Hussey, Jennifer D D Jolley, Alexandra S S Knight, Kerstin Koch, Elizabeth Meech, Sarah Nutland, Christopher V V Prowse, Helen E E Stevens, Niall C C Taylor, Graham R R Walters, Neil M M Walker, Nicholas A A Watkins, Thilo Winzer, John A A Todd, Willem H H Ouwehand, , Richard W W Jones, Wendy L L McArdle, Susan M M Ring, David P P Strachan, Marcus Pembrey, , Gerome Breen, David St S Clair, , Sian Caesar, Katharine Gordon-Smith, Lisa Jones, , Christine Fraser, Elaine K K Green, Detelina Grozeva, Marian L L Hamshere, Peter A A Holmans, Ian R R Jones, George Kirov, Valentina Moskivina, Ivan Nikolov, Michael C C O'Donovan, Michael J J Owen, Nick Craddock, , David A A Collier, Amanda Elkin, Anne Farmer, Richard Williamson, Peter McGuffin, , Allan H H Young, I Nicol N Ferrier, , Stephen G G Ball, Anthony J J Balmforth, Jennifer H H Barrett, Timothy D D Bishop, Mark M M Iles, Azhar Maqbool, Nadira Yuldasheva, Alistair S S Hall, , Peter S S Braund, Paul R R Burton, Richard J J Dixon, Massimo Mangino, Suzanne Stevens, Martin D D Tobin, John R R Thompson, Nilesh J J Samani, , Francesca Bredin, Mark Tremelling, Miles Parkes, , Hazel Drummond, Charles W W Lees, Elaine R R Nimmo, Jack Satsangi, , Sheila A A Fisher, Alastair Forbes, Cathryn M M Lewis, Clive M M Onnie, Natalie J J Prescott, Jeremy Sanderson, Christopher G G Matthew, , Jamie Barbour, M Khalid K Mohiuddin, Catherine E E Todhunter, John C C Mansfield, , Tariq Ahmad, Fraser R R Cummings, Derek P P Jewell, , John Webster, , Morris J J Brown, David G G Clayton, , Mark G G Lathrop, , John Connell, Anna Dominiczak, , Nilesh J J Samani, , Carolina A Braga A Marcano, Beverley Burke, Richard Dobson, Johannie Gungadoo, Kate L L Lee, Patricia B B Munroe, Stephen J J Newhouse, Abiodun Onipinla, Chris Wallace, Mingzhan Xue, Mark Caulfield, , Martin Farrall, , Anne Barton, , Ian N N Bruce, Hannah Donovan, Steve Eyre, Paul D D Gilbert, Samantha L L Hilder, Anne M M Hinks, Sally L L John, Catherine Potter, Alan J J Silman, Deborah Pm P Symmons, Wendy Thomson, Jane Worthington, , David G G Clayton, David B B Dunger, Sarah Nutland, Helen E E Stevens, Neil M M Walker, Barry Widmer, John A A Todd, , Timothy M M Frayling, Rachel M M Freathy, Hana Lango, John R B R Perry, Beverley M M Shields, Michael N N Weedon, Andrew T T Hattersley, , Graham A A Hitman, , Mark Walker, , Kate S S Elliott, Christopher J J Groves, Cecilia M M Lindgren, Nigel W W Rayner, Nicolas J J Timpson, Eleftheria Zeggini, Mark I I McCarthy, , Melanie Newport, Giorgio Sirugo, , Emily Lyons, Fredrik Vannberg, Adrian V S V Hill, , Linda A A Bradbury, Claire Farrar, Jennifer J J Pointon, Paul Wordsworth, Matthew A A Brown, , Jayne A A Franklyn, Joanne M M Heward, Matthew J J Simmonds, Stephen Cl C Gough, , Sheila Seal, , Michael R R Stratton, Nazneen Rahman, , Maria Ban, An Goris, Stephen J J Sawcer, Alastair Compston, , David Conway, Muminatou Jallow, Melanie Newport, Giorgio Sirugo, , Kirk A A Rockett, Dominic P P Kwiatkowski, , Suzannah J J Bumpstead, Amy Chaney, Kate Downes, Mohammed Jr J Ghori, Rhian Gwilliam, Sarah E E Hunt, Michael Inouye, Andrew Keniry, Emma King, Ralph McGinnis, Simon Potter, Rathi Ravindrarajah, Pamela Whittaker, Claire Widden, David Withers, Panos Deloukas, , Hin-Tak T Leung, Sarah Nutland, Helen E E Stevens, Neil M M Walker, John A A Todd, , Doug Easton, David G G Clayton, , Paul R R Burton, Martin D D Tobin, , Jeffrey C C Barrett, David M M Evans, Andrew P P Morris, Lon R R Cardon, , Niall J J Cardin, Dan Davison, Teresa Ferreira, Joanne Pereira-Gale, Ingeleif B B Hallgrimsdóttir, Bryan N N Howie, Jonathan L L Marchini, Chris Ca C Spencer, Zhan Su, Yik Ying Y Teo, Damjan Vukcevic, Peter Donnelly, , David Bentley, Matthew A A Brown, Lon R R Cardon, Mark Caulfield, David G G Clayton, Alastair Compston, Nick Craddock, Panos Deloukas, Peter Donnelly, Martin Farrall, Stephen Cl C Gough, Alistair S S Hall, Andrew T T Hattersley, Adrian V S V Hill, Dominic P P Kwiatkowski, Christopher G G Matthew, Mark I I McCarthy, Willem H H Ouwehand, Miles Parkes, Marcus Pembrey, Nazneen Rahman, Nilesh J J Samani, Michael R R Stratton, John A A Todd, Jane Worthington, , Sarah L L Mitchell, Paul R R Newby, Oliver J J Brand, Jackie Carr-Smith, Simon H S H Pearce, Stephen C L C Gough, , R McGinnis, A Keniry, P Deloukas, , John D D Reveille, Xiaodong Zhou, Linda A A Bradbury, Anne-Marie M Sims, Alison Dowling, Jacqueline Taylor, Tracy Doan, Lon R R Cardon, John C C Davis, Jennifer J J Pointon, Laurie Savage, Michael M M Ward, Thomas L L Learch, Michael H H Weisman, Paul Wordsworth, Matthew A A Brown
    posted to 14000 association disease snp by frohike to the group Bioinformatics on 2008-03-31 18:59:09 as **
  • Distribution modeling and simulation of gene expression data
    Computational Statistics & Data Analysis, Vol. In Press, Accepted Manuscript
    by Rudolph S Parrish, Spencer, Ping Xu
    posted to expression microarray modeling simulation by robertvandenberg to the group Bioinformatics on 2008-03-31 08:11:25 as ** along with 1 person bertelsen
  • Pathological features of rectal cancer after preoperative radiochemotherapy.
    Int J Colorectal Dis, Vol. 12, No. 1. (1997), pp. 19-23.
    by O Dworak, L Keilholz, A Hoffmann
    posted to cancer dworak grade rectal regression by frohike to the group Bioinformatics on 2008-03-28 17:14:09 as **
  • Quantification of histologic regression of rectal cancer after irradiation: a proposal for a modified staging system.
    Dis Colon Rectum, Vol. 45, No. 8. (August 2002), pp. 1051-1056.
    by JM Wheeler, BF Warren, NJ Mortensen, N Ekanyaka, H Kulacoglu, AC Jones, BD George, MG Kettlewell
    posted to cancer grade rectal regression wheeler by frohike to the group Bioinformatics on 2008-03-28 17:13:39 as **
  • Epigenetics in cancer.
    N Engl J Med, Vol. 358, No. 11. (13 March 2008), pp. 1148-1159.
    by M Esteller
    posted to cancer epigenetics by frohike to the group Bioinformatics on 2008-03-28 16:03:53 as ** along with 1 person jyuh
  • MicroRNA epigenetic alterations in human cancer: one step forward in diagnosis and treatment.
    Int J Cancer, Vol. 122, No. 5. (1 March 2008), pp. 963-968.
    by N Yang, G Coukos, L Zhang
    posted to cancer epigenetics microrna by frohike to the group Bioinformatics on 2008-03-28 16:03:24 as **
  • Computational Epigenetics.
    Bioinformatics (17 November 2007)
    by Christoph Bock, Thomas Lengauer
    posted to epigenetics review by frohike to the group Bioinformatics on 2008-03-28 16:00:52 as ** along with 11 people jyuh Thomasah Ema sebastien_vigneau ealloza djkt timflutre cjeans epigenetics cabbagezs barriot
  • Beyond Independence: Conditions for the Optimality of the Simple Bayesian Classifier
    (1996), pp. 105-112.
    by Pedro Domingos, Michael J Pazzani
    posted to bayes classifier naive by frohike to the group Bioinformatics on 2008-03-27 13:33:31 as ** along with 1 person wlyu2001
  • On the Optimality of the Simple Bayesian Classifier under Zero-One Loss
    Mach. Learn., Vol. 29, No. 2-3. (1997), pp. 103-130.
    by Pedro Domingos, Michael Pazzani
    posted to bayes naive performance by frohike to the group Bioinformatics on 2008-03-27 13:29:50 as ** along with 1 person davidr
  • Idiot's Bayes—Not So Stupid After All?
    International Statistical Review, Vol. 69, No. 3. (2001), pp. 385-398.
    by David J Hand, Keming Yu
    posted to bayes naive performance by frohike to the group Bioinformatics on 2008-03-27 13:24:41 as ** along with 1 person waghsk
  • Outcome signature genes in breast cancer: is there a unique set?
    Bioinformatics, Vol. 21, No. 2., 171.
    by Liat Ein-Dor, Itai Kela, Eytan Domany
    posted to 70-gene 76-gene amsterdam breast cancer rotterdam signature by frohike to the group Bioinformatics on 2008-03-27 12:00:14 as ** along with 1 person fishtank
  • Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer.
    Lancet, Vol. 365, No. 9460. (5 2005), pp. 671-679.
    by Y Wang, JG Klijn, Y Zhang, AM Sieuwerts, MP Look, F Yang, D Talantov, M Timmermans, ME Meijer-van Gelder, J Yu, T Jatkoe, EM Berns, D Atkins, JA Foekens
    posted to 76-gene breast cancer negative node signature by frohike to the group Bioinformatics on 2008-03-27 11:56:27 as ** along with 5 people and 1 group giovenko jfr tuck giovanni cberry GeschwindLab
  • An evaluation of human protein-protein interaction data in the public domain
    BMC Bioinformatics, Vol. 7, No. Suppl 5. (2006)
    by Suresh Mathivanan, Balamurugan Periaswamy, TKB Gandhi, Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, YL Ramachandra, Akhilesh Pandey
    posted to database hprd intact interactions protein by frohike to the group Bioinformatics on 2008-03-27 10:27:40 as ** along with 4 people grahamc alwinpremanand lpfernandes hpaces
  • A comparison of various methods for multivariate regression with highly collinear variables
    Statistical Methods and Applications, Vol. 16, No. 2. (August 2007), pp. 193-228.
    by Kiers, Henk, Smilde, Age
    posted to multivariate regression simulation validation by robertvandenberg to the group Bioinformatics on 2008-03-27 08:53:31 as read
  • The biology of cancer
    (2007)
    by RA Weinberg
    posted to biology cancer review by frohike to the group Bioinformatics on 2008-03-26 18:38:27 as **
  • Hypoxia and cancer
    Cancer and Metastasis Reviews, Vol. 26, No. 2. (June 2007), pp. 223-224.
    by Gregg Semenza
    posted to cancer hypoxia liver by frohike to the group Bioinformatics on 2008-03-26 18:35:15 as ** along with 1 person xtizon
  • Familial cancer associated with a polymorphism in ARLTS1.
    N Engl J Med, Vol. 352, No. 16. (21 April 2005), pp. 1667-1676.
    by GA Calin, F Trapasso, M Shimizu, CD Dumitru, S Yendamuri, AK Godwin, M Ferracin, G Bernardi, D Chatterjee, G Baldassarre, S Rattan, H Alder, H Mabuchi, T Shiraishi, LL Hansen, J Overgaard, V Herlea, FR Mauro, G Dighiero, B Movsas, L Rassenti, T Kipps, R Baffa, A Fusco, M Mori, G Russo, CG Liu, D Neuberg, F Bullrich, M Negrini, CM Croce
    posted to arlts1 cancer cgh familial loss by frohike to the group Bioinformatics on 2008-03-26 10:15:37 as **
  • MicroRNA expression profiles classify human cancers
    Nature, Vol. 435, No. 7043., pp. 834-838.
    by Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando, James R Downing, Tyler Jacks, Robert R Horvitz, Todd R Golub
    posted to cancer data expression microrna by frohike to the group Bioinformatics on 2008-03-26 09:50:38 as ** along with 8 people and 1 group zhouyu tmmurali ajeffs tuck mtagaya ealloza capitall maralena microRNA
  • Characterization of microRNA expression profiles in normal human tissues
    BMC Genomics, Vol. 8 (12 June 2007), 166.
    by Yu Liang, Dana Ridzon, Linda Wong, Caifu Chen
    posted to expression microrna normal tissue by frohike to the group Bioinformatics on 2008-03-26 09:47:38 as ** along with 3 people and 1 group jfr bootsy heliopais microRNA
  • Permutation, Parametric, and Bootstrap Tests of Hypotheses (Springer Series in Statistics)
    (01 December 2004)
    by Phillip I Good
    posted to book bootstrap hypothesis permutation testing by frohike to the group Bioinformatics on 2008-03-25 15:58:30 as ** along with 3 people and 2 groups pbellec ctacmo jclau Statistics_and_Social_Science Biostatistics
  • A note on the calculation of empirical P values from Monte Carlo procedures.
    Am J Hum Genet, Vol. 71, No. 2. (August 2002), pp. 439-441.
    by BV North, D Curtis, PC Sham
    posted to carlo correction monte note p permutation values by frohike to the group Bioinformatics on 2008-03-25 15:52:05 as **
  • The meaning and use of the area under a receiver operating characteristic (ROC) curve.
    Radiology, Vol. 143, No. 1. (April 1982), pp. 29-36.
    by JA Hanley, BJ McNeil
    posted to area characteristic operating receiver roc by frohike to the group Bioinformatics on 2008-03-25 15:41:01 as ** along with 10 people and 3 groups Flit neteler nachtalp microserf mdreid Repton jarasch bootsy girschick adoms biodiversity_conservation Global_biodiversity_model Statistical Machine Learning
  • Predicting the clinical behavior of ovarian cancer from gene expression profiles.
    Int J Gynecol Cancer, Vol. 16 Suppl 1 (b 2006), pp. 147-151.
    by F De Smet, NL Pochet, K Engelen, T Van Gorp, P Van Hummelen, K Marchal, F Amant, D Timmerman, BL De Moor, IB Vergote
    posted to cancer micorarray ovarian by frohike to the group Bioinformatics on 2008-03-25 13:37:10 as **
  • Transcriptome classification of HCC is related to gene alterations and to new therapeutic targets.
    Hepatology, Vol. 45, No. 1. (January 2007), pp. 42-52.
    by S Boyault, DS Rickman, A de Reyniès, C Balabaud, S Rebouissou, E Jeannot, A Hérault, J Saric, J Belghiti, D Franco, P Bioulac-Sage, P Laurent-Puig, J Zucman-Rossi
    posted to cancer hcc liver by frohike to the group Bioinformatics on 2008-03-25 11:18:37 as ** along with 1 person jyuh
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to enrichment gsea signature by frohike to the group Bioinformatics on 2008-03-25 09:18:04 as ** along with 17 people and 3 groups dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys BioinfoCIPF GeschwindLab Indigene
  • notes What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to pca review by barry to the group Bioinformatics on 2008-03-21 19:36:38 as ** along with 41 people and 1 group i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon baaic laharrin dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu baker-group
  • Challenges in array comparative genomic hybridization for the analysis of cancer samples.
    Genet Med, Vol. 9, No. 9. (September 2007), pp. 585-595.
    by NJ Nowak, J Miecznikowski, SR Moore, D Gaile, D Bobadilla, DD Smith, K Kernstine, SJ Forman, P Mhawech-Fauceglia, M Reid, D Stoler, T Loree, N Rigual, M Sullivan, LM Weiss, D Hicks, ML Slovak
    posted to array cancer cgh by frohike to the group Bioinformatics on 2008-03-21 14:54:21 as **
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to data microarray proteomics review by frohike to the group Bioinformatics on 2008-03-21 14:47:37 as ** along with 7 people jyuh tmmurali dwf cjeans nedwards shikin blackm0k
  • Classification of a large microarray data set: algorithm comparison and analysis of drug signatures.
    Genome Res, Vol. 15, No. 5. (May 2005), pp. 724-736.
    by G Natsoulis, L El Ghaoui, GR Lanckriet, AM Tolley, F Leroy, S Dunlea, BP Eynon, CI Pearson, S Tugendreich, K Jarnagin
    posted to database drug geo microarray signature by frohike to the group Bioinformatics on 2008-03-21 14:43:01 as **