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Group: Bioinformatics - with tag 0001 [23 articles]

Recent papers posted by members of the Bioinformatics group with tag 0001
  • Frequent alternative splicing of human genes
    Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293.
    by AA Mironov, JW Fickett, MS Gelfand
    posted to 0001 19991230 5 alignment alternative base contig data databases exonsgenetics expressed factual govt humans intronsgenetics isoformsgenetics mappingmethods molecular non-phs non-us protein regionsgenetics research sequence sequencegenetics splicing support tags untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • A decision tree system for finding genes in DNA
    J Comput Biol, Vol. 5, No. 4. (Win 1998), pp. 667-680.
    by S Salzberg, AL Delcher, KH Fasman, J Henderson
    posted to 0001 19990311 algorithms chains decision dnaclassificationgenetics genes govt markov non-phs phs research support techniques trees us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as **
  • Identification of protein coding regions in genomic DNA
    J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18.
    by EE Snyder, GD Stormo
    posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as **
  • Sequence logos: a new way to display consensus sequences
    Nucleic Acids Res, Vol. 18, No. 20. (Oct 1990), pp. 6097-6100.
    by TD Schneider, RM Stephens
    posted to 0001 19901025 acid amino bacteriophage base binding chromosome coligenetics data deletion dna dna-directed elements escherichia genes genetic globinsgenetics govt humans lambdagenetics molecular non-us phs polymerasesmetabolism research rna sequence sites support t-phagesenzymologygenetics techniques transposable us viral by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:35 as **
  • EST\_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA
    Comput Appl Biosci, Vol. 13, No. 4. (Aug 1997), pp. 477-478.
    by R Mott
    posted to 0001 16genetics 19970801 acid algorithms alignmentmethodsstatistics base chromosomes complementarygenetics data dna evaluation expression gene genome govt homology human humans molecular non-us nucleic numerical pair recombinant research sequence software studies support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:34 as **
  • Interpolated Markov models for eukaryotic gene finding
    Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31.
    by SL Salzberg, M Pertea, AL Delcher, MJ Gardner, H Tettelin
    posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as **
  • Finding genes in DNA with a Hidden Markov Model
    J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141.
    by J Henderson, S Salzberg, KH Fasman
    posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as **
  • Combining diverse evidence for gene recognition in completely sequenced bacterial genomes
    Nucleic Acids Res, Vol. 26, No. 12. (Jun 1998), pp. 2941-2947.
    by D Frishman, A Mironov, HW Mewes, M Gelfand
    posted to 0001 19980605 algorithms alignmentmethods analysis bacillus bacterial codon coligenetics databases dna escherichia factual frames genome govt initiator non-us open proteinsgenetics reading research sequence software subtilisgenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as **
  • Improved microbial gene identification with GLIMMER
    Nucleic Acids Res, Vol. 27, No. 23. (Dec 1999), pp. 4636-4641.
    by AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
    posted to 0001 19991111 algorithms bacterial chains genes genetic govt markov models non-phs phs research support techniquesstandards us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as **
  • Microbial gene identification using interpolated Markov models
    Nucleic Acids Res, Vol. 26, No. 2. (Jan 1998), pp. 544-548.
    by SL Salzberg, AL Delcher, S Kasif, O White
    posted to 0001 19980228 algorithms alignment and bacterialanalysischemistry base chains dna frames govt haemophilus helicobacter influenzaegenetics markov non-phs open phs pylorigenetics reading research sensitivity sequence software specificity support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as **
  • Identification of protein coding regions in the human genome by quadratic discriminant analysis
    Proc Natl Acad Sci U S A, Vol. 94, No. 2. (Jan 1997), pp. 565-568.
    by MQ Zhang
    posted to 0001 19970121 analysis base data dnamethods exons genes genome govt human humans molecular multivariate phs project proteinsgenetics research sequence software structural support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:08 as **
  • Assessing protein coding region integrity in cDNA sequencing projects
    Bioinformatics, Vol. 14, No. 5. (Jun 1998), pp. 384-390.
    by AA Salamov, T Nishikawa, MB Swindells
    posted to 0001 19980731 analysis base biology codon complementarygenetics computational databases dna factual frames humans initiatorgenetics messengergenetics open proteinsgenetics reading rna sequence by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:01 as **
  • Hidden Markov models for sequence analysis: extension and analysis of the basic method
    Comput Appl Biosci, Vol. 12, No. 2. (Apr 1996), pp. 95-107.
    by R Hughey, A Krogh
    posted to amino factual models 0001 algorithms chains studies alignmentmethodsstatistics evaluation govt homology non-us sequence acid analysismethodsstatistics data domainsgenetics humans markov numerical src statistical support us 19960401 animals base databases non-phs research software by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:09 as **
  • A branch point consensus from Arabidopsis found by non-circular analysis allows for better prediction of acceptor sites
    Nucleic Acids Res, Vol. 25, No. 15. (Aug 1997), pp. 3159-3163.
    by N Tolstrup, P Rouze, S Brunak
    posted to 0001 19970801 arabidopsisgenetics binding consensus dna genetic govt models non-us plant research sequence sites support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as **
  • A generalized hidden Markov model for the recognition of human genes in DNA
    Proc Int Conf Intell Syst Mol Biol, Vol. 4 (1996), pp. 134-142.
    by D Kulp, D Haussler, MG Reese, FH Eeckman
    posted to 0001 19960101 chains chromosomes deletion dnachemistry exons genetic govt humanchemistry humans introns markov models non-phs research sequence software support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as **
  • Exon recognition in vertebrate splicing
    J Biol Chem, Vol. 270, No. 6. (Feb 1995), pp. 2411-2414.
    by SM Berget
    posted to 0001 19950210 animals elements enhancer exons genetics introns rna splicing vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:54 as **
  • Selection of representative protein data sets
    Protein Sci, Vol. 1, No. 3. (Mar 1992), pp. 409-417.
    by U Hobohm, M Scharf, R Schneider, C Sander
    posted to 0001 19920301 algorithms animals comparative conformation databases diffraction factual human magnetic protein proteinschemistry resonance spectroscopy study x-ray by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:53 as **
  • Prediction of complete gene structures in human genomic DNA
    J Mol Biol, Vol. 268, No. 1. (Apr 1997), pp. 78-94.
    by C Burge, S Karlin
    posted to 0001 19970425 analysis animals chains comparative data dna exons genes genetic genetics genome govt human introns markov models molecular non-phs phs probability promoter proteinsgenetics regions rna sequence software splicing study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as **
  • GeneMark.hmm: new solutions for gene finding
    Nucleic Acids Res, Vol. 26, No. 4. (Feb 1998), pp. 1107-1115.
    by AV Lukashin, M Borodovsky
    posted to 0001 19980321 algorithms bacterial bacterialgenetics base chains coligenetics comparative databases dna escherichia evaluation factual genes genetic genome govt markov models phs sequence software studies study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as **
  • Heuristic approach to deriving models for gene finding
    Nucleic Acids Res, Vol. 27, No. 19. (Oct 1999), pp. 3911-3920.
    by J Besemer, M Borodovsky
    posted to 0001 19990911 1genetics bacterial cells chains codon eukaryotic evolution genes genetic genome govt hiv-1genetics human internet markov models molecular non-us phs support t-lymphotropic us viral virus by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as **
  • Influence of intron length on alternative splicing of CD44
    Mol Cell Biol, Vol. 18, No. 10. (Oct 1998), pp. 5930-5941.
    by MV Bell, AE Cowper, MP Lefranc, JI Bell, GR Screaton
    posted to 0001 19980919 alternative animals antigens cd44genetics cells cos exons govt human introns mice non-us purines splicing support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:42 as **
  • Two methods for improving performance of an HMM and their application for gene finding
    Proc Int Conf Intell Syst Mol Biol, Vol. 5 (1997), pp. 179-186.
    by A Krogh
    posted to 0001 19971010 algorithms base chains comparative data databases dnagenetics evaluation factual functions genes genetic govt human likelihood markov models molecular non-us sequence studies study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:40 as **
  • Hidden neural networks
    Neural Comput, Vol. 11, No. 2. (Feb 1999), pp. 541-563.
    by A Krogh, SK Riis
    posted to 0001 19990209 chains computer databases functions govt human likelihood markov models networks neural non-us pattern perception recognition speech statistical support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:38 as **
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