Group: Bioinformatics - with tag 0900 [43 articles] Export

Recent papers posted by members of the Bioinformatics group with tag 0900

	Gene identification in novel eukaryotic genomes by self-training algorithm [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506. by A. Lomsadze, Ter V. Hovhannisyan, Y. O. Chernoff, M. Borodovsky posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Accurate identification of alternatively spliced exons using support vector machine [My Copy] Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 897-901. by G. Dror, R. Sorek, R. Shamir posted to 0900 20050713 algorithms alignmentmethods alternative analysis animals artificial automatedmethods chromosome comparative conserved dnamethods evolution exonsgenetics govt humans intelligence mappingmethods mice molecular non-us pattern recognition research sequence sequencegenetics software splicinggenetics study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	RASE: recognition of alternatively spliced exons in C.elegans [My Copy] Bioinformatics, Vol. 21 Suppl 1 (Jun 2005), pp. i369-i377. by G. Rätsch, S. Sonnenburg, B. Schölkopf posted to 0900 20050618 by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences [My Copy] Nucleic Acids Res, Vol. 32, No. 17. (2004), pp. 5096-5103. by K. Iida, M. Seki, T. Sakurai, et al.M. Satou, K. Akiyama, T. Toyoda, A. Konagaya, K. Shinozaki posted to 0900 20041013 alternative arabidopsisgeneticsgrowth base chromosome cold complementarychemistry developmentmetabolism dna genome govt mapping messengermetabolism non-us plant plantmetabolism precursorsmetabolism research rna sequence splicing support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Integrative annotation of 21,037 human genes validated by full-length cDNA clones [My Copy] PLoS Biol, Vol. 2, No. 6. (Jun 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Yamaguchi Y. Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, Thierry J. Mieg, Thierry D. Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, Bonaldo F. Mde, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, Fukami K. Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, Mariage R. Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, Piatier D. Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as
	Genome-wide assembly and analysis of alternative transcripts in mouse [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754. by A. A. Sharov, D. B. Dudekula, M. S. Ko posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome [My Copy] Nat Genet, Vol. 24, No. 4. (Apr 2000), pp. 340-341. by L. Croft, S. Schandorff, F. Clark, K. Burrage, P. Arctander, J. S. Mattick posted to 0900 20000508 alternative biology computational databases exonsgenetics expressed factualtrends frequency gene genome human humans intronsgenetics isoformsgenetics messengergenetics protein rna sequence splicinggenetics tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing of conserved exons is frequently species-specific in human and mouse [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77. by Q. Pan, M. A. Bakowski, Q. Morris, et al.W. Zhang, B. J. Frey, T. R. Hughes, B. J. Blencowe posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing, the gene concept, and evolution [My Copy] Hist Philos Life Sci, Vol. 26, No. 1. (2004) by S. M. Downes posted to 0900 20050511 alternative animals biology concept evolution formation genes genome human humans molecular philosophy splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	Stochastic models inspired by hybridization theory for short oligonucleotide arrays [My Copy] J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893. by Z. Wu, R. A. Irizarry posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102. by J. M. Johnson, S. Edwards, D. Shoemaker, E. E. Schadt posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	Global identification of human transcribed sequences with genome tiling arrays [My Copy] Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246. by P. Bertone, V. Stolc, T. E. Royce, et al.J. S. Rozowsky, A. E. Urban, X. Zhu, J. L. Rinn, W. Tongprasit, M. Samanta, S. Weissman, M. Gerstein, M. Snyder posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as
	A comprehensive transcript index of the human genome generated using microarrays and computational approaches [My Copy] Genome Biol, Vol. 5, No. 10. (2004) by E. E. Schadt, S. W. Edwards, D. Guhathakurta, et al.D. Holder, L. Ying, V. Svetnik, A. Leonardson, K. W. Hart, A. Russell, G. Li, G. Cavet, J. Castle, P. Mcdonagh, Z. Kan, R. Chen, A. Kasarskis, M. Margarint, R. M. Caceres, J. M. Johnson, C. D. Armour, Garrett P. W. Engele, N. F. Tsinoremas, D. D. Shoemaker posted to 0900 20050729 20genetics 22genetics analysis and array biology chromosomes computational conserved expression gene geneticgenetics genome human humans of oligonucleotide organ pair profiling reproducibility results sensitivity sequence sequencegenetics specificity transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as
	Antisense transcription in the mammalian transcriptome [My Copy] Science, Vol. 309, No. 5740. (Sep 2005), pp. 1564-1566. by S. Katayama, Y. Tomaru, T. Kasukawa, et al.K. Waki, M. Nakanishi, M. Nakamura, H. Nishida, C. C. Yap, M. Suzuki, J. Kawai, H. Suzuki, P. Carninci, Y. Hayashizaki, C. Wells, M. Frith, T. Ravasi, K. C. Pang, J. Hallinan, J. Mattick, D. A. Hume, L. Lipovich, S. Batalov, P. G. Engstrom, Y. Mizuno, M. A. Faghihi, A. Sandelin, A. M. Chalk, Mottagui S. Tabar, Z. Liang, B. Lenhard, C. Wahlestedt posted to 0900 20050915 animals antisensebiosynthesis expression gene genetic genome govt humans interference messengerbiosynthesis micegenetics non-us regulation research rna support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:45 as
	The transcriptional landscape of the mammalian genome [My Copy] Science, Vol. 309, No. 5740. (Sep 2005), pp. 1559-1563. by P. Carninci, T. Kasukawa, S. Katayama, et al.J. Gough, M. C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, R. Kodzius, K. Shimokawa, V. B. Bajic, S. E. Brenner, S. Batalov, A. R. Forrest, M. Zavolan, M. J. Davis, L. G. Wilming, V. Aidinis, J. E. Allen, Ambesi A. Impiombato, R. Apweiler, R. N. Aturaliya, T. L. Bailey, M. Bansal, L. Baxter, K. W. Beisel, T. Bersano, H. Bono, A. M. Chalk, K. P. Chiu, V. Choudhary, A. Christoffels, D. R. Clutterbuck, M. L. Crowe, E. Dalla, B. P. Dalrymple, B. de Bono, G. Della Gatta, D. di Bernardo, T. Down, P. Engstrom, M. Fagiolini, G. Faulkner, C. F. Fletcher, T. Fukushima, M. Furuno, S. Futaki, M. Gariboldi, Georgii P. Hemming, T. R. Gingeras, T. Gojobori, R. E. Green, S. Gustincich, M. Harbers, Y. Hayashi, T. K. Hensch, N. Hirokawa, D. Hill, L. Huminiecki, M. Iacono, K. Ikeo, A. Iwama, T. Ishikawa, M. Jakt, A. Kanapin, M. Katoh, Y. Kawasawa, J. Kelso, H. Kitamura, H. Kitano, G. Kollias, S. P. Krishnan, A. Kruger, S. K. Kummerfeld, I. V. Kurochkin, L. F. Lareau, D. Lazarevic, L. Lipovich, J. Liu, S. Liuni, S. Mcwilliam, Madan M. Babu, M. Madera, L. Marchionni, H. Matsuda, S. Matsuzawa, H. Miki, F. Mignone, S. Miyake, K. Morris, Mottagui S. Tabar, N. Mulder, N. Nakano, H. Nakauchi, P. Ng, R. Nilsson, S. Nishiguchi, S. Nishikawa, F. Nori, O. Ohara, Y. Okazaki, V. Orlando, K. C. Pang, W. J. Pavan, G. Pavesi, G. Pesole, N. Petrovsky, S. Piazza, J. Reed, J. F. Reid, B. Z. Ring, M. Ringwald, B. Rost, Y. Ruan, S. L. Salzberg, A. Sandelin, C. Schneider, C. Schonbach, K. Sekiguchi, C. A. Semple, S. Seno, L. Sessa, Y. Sheng, Y. Shibata, H. Shimada, K. Shimada, D. Silva, B. Sinclair, S. Sperling, E. Stupka, K. Sugiura, R. Sultana, Y. Takenaka, K. Taki, K. Tammoja, S. L. Tan, S. Tang, M. S. Taylor, J. Tegner, S. A. Teichmann, H. R. Ueda, E. van Nimwegen, R. Verardo, C. L. Wei, K. Yagi, H. Yamanishi, E. Zabarovsky, S. Zhu, A. Zimmer, W. Hide, C. Bult, S. M. Grimmond, R. D. Teasdale, E. T. Liu, V. Brusic, J. Quackenbush, C. Wahlestedt, J. S. Mattick, D. A. Hume, C. Kai, D. Sasaki, Y. Tomaru, S. Fukuda, Kanamori M. Katayama, M. Suzuki, J. Aoki, T. Arakawa, J. Iida, K. Imamura, M. Itoh, T. Kato, H. Kawaji, N. Kawagashira, T. Kawashima, M. Kojima, S. Kondo, H. Konno, K. Nakano, N. Ninomiya, T. Nishio, M. Okada, C. Plessy, K. Shibata, T. Shiraki, S. Suzuki, M. Tagami, K. Waki, A. Watahiki, Okamura Y. Oho, H. Suzuki, J. Kawai, Y. Hayashizaki posted to 0900 20050915 3 acid animals base complementarychemistry conserved dna genetic genetics genome genomics govt human humans initiation micegenetics non-us promoter proteinsgenetics regions regulatory research ribonucleic rna rnachemistryclassification sequence sequences site splicing support terminator transcription untranslated untranslatedchemistry by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:43 as
	Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication [My Copy] Nature, Vol. 437, No. 7055. (Sep 2005), pp. 94-100. by E. V. Linardopoulou, E. M. Williams, Y. Fan, C. Friedman, J. M. Young, B. J. Trask posted to 0900 20050913 acid animals base biology breakagegenetics chromosome chromosomes computational dna duplication extramural factors gene genetic geneticgenetics genome genomics govt homology human humangenetics humans models nih nucleic phs polymorphism primatesgenetics recombination repair research sequence support telomeregenetics time translocation us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:41 as
	Applications of DNA tiling arrays for whole-genome analysis [My Copy] Genomics, Vol. 85, No. 1. (Jan 2005), pp. 1-15. by T. C. Mockler, S. Chan, A. Sundaresan, H. Chen, S. E. Jacobsen, J. R. Ecker posted to 0900 20050623 analysismethodstrends animals array chromatin dna expression extramural gene geneticgenetics genome genotype govt humans immunoprecipitationmethodstrends methylation nih non-phs oligonucleotide phs polymorphism profilingmethodstrends research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:40 as
	Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping [My Copy] Trends Genet, Vol. 21, No. 8. (Aug 2005), pp. 466-475. by T. E. Royce, J. S. Rozowsky, P. Bertone, et al.M. Samanta, V. Stolc, S. Weissman, M. Snyder, M. Gerstein posted to 0900 20050915 algorithms analysismethodsstatistics array base biology comparative computational data dnagenetics extramural genetic govt humans molecular nih numerical oligonucleotide phs probes research sequence study support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes [My Copy] Genome Res, Vol. 15, No. 8. (Aug 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to 0900 20050719 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	Ensembl 2005 [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (Jan 2005), pp. D447-D453. by T. Hubbard, D. Andrews, M. Caccamo, et al.G. Cameron, Y. Chen, M. Clamp, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, Fernandez X. M. Suarez, J. Gilbert, M. Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, F. Kokocinsci, D. London, I. Longden, G. Mcvicker, C. Melsopp, P. Meidl, S. Potter, G. Proctor, M. Rae, D. Rios, M. Schuster, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, S. Trevanion, Ureta A. Vidal, J. Vogel, S. White, C. Woodwark, E. Birney posted to 0900 20050416 acid alignment animals base cattle databases dogs genomics govt humans interface internet mice non-us nucleic phs rats research sequence software support us user-computer by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	Tiling array-driven elucidation of transcriptional structures based on maximum-likelihood and Markov models [My Copy] Plant J, Vol. 43, No. 4. (Aug 2005), pp. 611-621. by T. Toyoda, K. Shinozaki posted to 0900 20050816 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	Introducing RefSeq and LocusLink: curated human genome resources at the NCBI [My Copy] Trends Genet, Vol. 16, No. 1. (Jan 2000), pp. 44-47. by K. D. Pruitt, K. S. Katz, H. Sicotte, D. R. Maglott posted to 0900 20000226 databases factual genome human humans internet by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:32 as
	Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells [My Copy] Genome Biol, Vol. 6, No. 8. (2005) by A. S. Brodsky, C. A. Meyer, I. A. Swinburne, et al.G. Hall, B. J. Keenan, X. S. Liu, E. A. Fox, P. A. Silver posted to 0900 20050810 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:32 as
	A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences [My Copy] Bioinformatics, Vol. 21 Suppl 1 (Jun 2005), pp. i274-i282. by W. Li, C. A. Meyer, X. S. Liu posted to 0900 20050618 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:32 as
	Systematic identification and analysis of exonic splicing silencers [My Copy] Cell, Vol. 119, No. 6. (Dec 2004), pp. 831-845. by Z. Wang, M. E. Rolish, G. Yeo, V. Tung, M. Mawson, C. B. Burge posted to 0900 20050317 a-bgenetics acidgenetics algorithms analysis animals base cells cluster computer cultured data elements exonsgenetics f-hgenetics gene govt group heterogeneous-nuclear humans library molecular non-phs non-us phs regulatory research ribonucleic ribonucleoprotein rna sequence sequences silencer simulation splicinggeneticsphysiology support transcriptionalgenetics us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:25 as
	Identification and analysis of alternative splicing events conserved in human and mouse [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 8. (Feb 2005), pp. 2850-2855. by G. W. Yeo, E. Van Nostrand, D. Holste, T. Poggio, C. B. Burge posted to 0900 20050325 alternative animals base conserved evolution exons expressed govt humans mice non-phs non-us phs research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:24 as
	Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals [My Copy] Nature, Vol. 434, No. 7031. (Mar 2005), pp. 338-345. by X. Xie, J. Lu, E. J. Kulbokas, et al.T. R. Golub, V. Mootha, Lindblad K. Toh, E. S. Lander, M. Kellis posted to 0900 20050331 3 alignment animals base comparative conserved data dogs expression gene geneticsgenetics govt humans mammalsgenetics mice micrornasgeneticsmetabolism molecular organ phs profiling promoter rats regions regionsgenetics research sequence sequencegenetics specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:20 as
	A high-resolution map of active promoters in the human genome [My Copy] Nature (Jun 2005) by T. H. Kim, L. O. Barrera, M. Zheng, et al.C. Qu, M. A. Singer, T. A. Richmond, Y. Wu, R. D. Green, B. Ren posted to 0900 20050701 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:20 as
	Gene finding in the chicken genome [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (May 2005) by E. Eyras, A. Reymond, R. Castelo, et al.J. M. Bye, F. Camara, P. Flicek, E. J. Huckle, G. Parra, D. D. Shteynberg, C. Wyss, J. Rogers, S. E. Antonarakis, E. Birney, R. Guigo, M. R. Brent posted to 0900 20050601 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as
	AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W465-W467. by M. Stanke, B. Morgenstern posted to 0900 20050628 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as
	Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions [My Copy] Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582. by C. Wei, P. Lamesch, M. Arumugam, et al.J. Rosenberg, P. Hu, M. Vidal, M. R. Brent posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W451-W454. by J. Besemer, M. Borodovsky posted to 0900 20050628 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	Recent advances in gene structure prediction [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (Jun 2004), pp. 264-272. by M. R. Brent, R. Guigo posted to 0900 20041230 acid animals base conformation exons genes genomicstrends govt humans introns models molecular non-phs non-us nucleic phs proteinschemistrygeneticsmetabolism research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:12 as
	Begin at the beginning: predicting genes with 5' UTRs [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 742-747. by R. H. Brown, S. S. Gross, M. R. Brent posted to dna evaluation exonsgenetics extramural genesgenetics genetic genome genomicsmethods govt human humans initiation models molecular nih phs regionsgenetics research sequence 0900 20050610 5 analysis base biologymethods computational data site studies support transcription untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:09 as
	A gene expression map for the euchromatic genome of Drosophila melanogaster [My Copy] Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660. by V. Stolc, Z. Gauhar, C. Mason, et al.G. Halasz, M. F. van Batenburg, S. A. Rifkin, S. Hua, T. Herreman, W. Tongprasit, P. E. Barbano, H. J. Bussemaker, K. P. White posted to 0900 20041216 algorithms analysis animals array biology computational cycle development dna drosophila drosophilagenetics evolution exons expression female gene genes genetic genome govt insect intergenic introns life male melanogastergeneticsgrowth molecular non-phs non-us oligonucleotide phs probes profiling proteinsgeneticsphysiology research rna sequence splicing stages support synteny transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:04 as
	Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution [My Copy] Science (Mar 2005) by J. Cheng, P. Kapranov, J. Drenkow, et al.S. Dike, S. Brubaker, S. Patel, J. Long, D. Stern, H. Tammana, G. Helt, V. Sementchenko, A. Piccolboni, S. Bekiranov, D. K. Bailey, M. Ganesh, S. Ghosh, I. Bell, D. S. Gerhard, T. R. Gingeras posted to 0900 20050326 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:04 as
	Integrating alternative splicing detection into gene prediction [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (Feb 2005) by S. Foissac, T. Schiex posted to 0900 20050212 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:02 as
	Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences [My Copy] Bioinformatics, Vol. 15, No. 11. (Nov 1999), pp. 887-899. by N. Pavy, S. Rombauts, P. Dehais, et al.C. Mathe, D. V. Ramana, P. Leroy, P. Rouze posted to alternative contig dnamethods exonsgenetics sequence splicinggenetics study 20000608 computational evaluation reproducibility software studies support comparative mappingmethods 0900 arabidopsisgenetics genetic govt of protein research results validation analysis biologymethods databases factual genome models non-us plant by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:26 as
	How did alternative splicing evolve? [My Copy] Nat Rev Genet, Vol. 5, No. 10. (Oct 2004), pp. 773-782. by G. Ast posted to 0900 20041222 alternative base evolution genetic govt intronsgenetics messengergenetics models molecular non-us pairinggenetics research rna sitesgenetics splice splicinggenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	An empirical analysis of training protocols for probabilistic gene finders [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (Dec 2004) by W. H. Majoros, S. L. Salzberg posted to 0900 20041223 by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:54 as
	Genie--gene finding in Drosophila melanogaster [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 529-538. by M. G. Reese, D. Kulp, H. Tammana, D. Haussler posted to 0900 20000617 analysis animals biologymethods chains comparative computational databases dnamethods drosophila expressed factual genes genetic geneticsgenetics govt insectgenetics markov melanogastergenetics models non-phs phs promoter regions sequence software structural study support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:52 as
	GeneID in Drosophila [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 511-515. by G. Parra, E. Blanco, R. Guigo posted to 0900 20000617 alcohol algorithms animals biology computational databases dehydrogenasegenetics drosophila factual genes govt insectgenetics melanogasterenzymologygenetics non-us software structural support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as
	Using database matches with for HMMGene for automated gene detection in Drosophila [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 523-528. by A. Krogh posted to 0900 20000617 acid alcohol analysis and animals biologystatistics chains comparative computational computer-assisted data databases dehydrogenasegenetics drosophila factual genes govt homology insectgenetics markov melanogasterenzymologygenetics non-us nucleic numerical sensitivity sequence software specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:36 as

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