Group: Bioinformatics - with tag 1001 [27 articles] Export

Recent papers posted by members of the Bioinformatics group with tag 1001

	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Gene structure prediction and alternative splicing analysis using genomically aligned ESTs [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900. by Z. Kan, E. C. Rouchka, W. R. Gish, D. J. States posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	In silico screening for tumour-specific expressed sequences in human genome [My Copy] FEBS Lett, Vol. 508, No. 1. (Nov 2001), pp. 143-148. by A. V. Baranova, A. V. Lobashev, D. V. Ivanov, L. L. Krukovskaya, N. K. Yankovsky, A. P. Kozlov posted to 1001 20020105 databases expressed expression gene genes genetic genome human humans library neoplasm neoplasmsgenetics profilingmethods sequence structural tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing and genome complexity [My Copy] Nat Genet, Vol. 30, No. 1. (Jan 2002), pp. 29-30. by D. Brett, H. Pospisil, J. Valcarcel, J. Reich, P. Bork posted to 1001 20020205 alternative animals cattle expressed geneticsgenetics genome humans messengergenetics mice rats rna sequence splicing tags variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Experimental annotation of the human genome using microarray technology [My Copy] Nature, Vol. 409, No. 6822. (Feb 2001), pp. 922-927. by D. D. Shoemaker, E. E. Schadt, C. D. Armour, et al.Y. D. He, Garrett P. Engele, P. D. Mcdonagh, P. M. Loerch, A. Leonardson, P. Y. Lum, G. Cavet, L. F. Wu, S. J. Altschuler, S. Edwards, J. King, J. S. Tsang, G. Schimmack, J. M. Schelter, J. Koch, M. Ziman, M. J. Marton, B. Li, P. Cundiff, T. Ward, J. Castle, M. Krolewski, M. R. Meyer, M. Mao, J. Burchard, M. J. Kidd, H. Dai, J. W. Phillips, P. S. Linsley, R. Stoughton, S. Scherer, M. S. Boguski posted to 1001 20010327 22 algorithms alternative analysis array biology cell chromosomes complementary computational dna exons genome human humans line oligonucleotide pair probes project sequence splicing by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as
	Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data [My Copy] Genome Res, Vol. 12, No. 8. (Aug 2002), pp. 1286-1293. by H. Kochiwa, R. Suzuki, T. Washio, et al.R. Saito, H. Bono, P. Carninci, Y. Okazaki, R. Miki, Y. Hayashizaki, M. Tomita posted to 1001 20020907 alternative analysis analysisstatistics animals array cluster complementarygenetics data databases dna expression forecastingmethods gene geneticgenetics geneticstatistics govt library mice non-us numerical oligonucleotide profilingstatistics regulationgenetics research sequence splicinggenetics support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:44 as
	The human genome browser at UCSC [My Copy] Genome Res, Vol. 12, No. 6. (Jun 2002), pp. 996-1006. by W. J. Kent, C. W. Sugnet, T. S. Furey, et al.K. M. Roskin, T. H. Pringle, A. M. Zahler, D. Haussler posted to 1001 20020702 acid california database databases expression gene genes genetic genome govt homology human humans management messenger non-phs non-us nucleic phs research rna sequence software structural support systems universitiestrends us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	RefSeq and LocusLink: NCBI gene-centered resources [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (Jan 2001), pp. 137-140. by K. D. Pruitt, D. R. Maglott posted to 1001 20010303 alignment animals biotechnology chromosome databases factual genes health humans information institutes internet library mapping medicine messengergenetics national of proteinsgenetics rna sequence services states structuralgenetics united us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:33 as
	Predictive identification of exonic splicing enhancers in human genes [My Copy] Science, Vol. 297, No. 5583. (Aug 2002), pp. 1007-1013. by W. G. Fairbrother, R. F. Yeh, P. A. Sharp, C. B. Burge posted to 1001 20020829 acid analysis biology complementary computational consensus databases dna exons genes genome govt human humans hypoxanthine introns mutation non-us nucleic oligonucleotidesgenetics phosphoribosyltransferasegenetics phs point regulatory research rna sequence sequences splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:23 as
	Functions and mechanisms of RNA editing [My Copy] Annu Rev Genet, Vol. 34 (2000), pp. 499-531. by J. M. Gott, R. B. Emeson posted to 1001 20010307 acid amino base conformation data editing homology messengerchemistrygenetics molecular nucleic rna sequence transferchemistrygenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:21 as
	Integrating genomic homology into gene structure prediction [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S140-S148. by I. Korf, P. Flicek, D. Duan, M. R. Brent posted to 1001 20020228 acid algorithms alignmentstatistics and animals base biology comparative computational conserved data dnagenetics evolution genome govt homology human humans mice models molecular non-phs non-us nucleic numerical phs research sensitivity sequence specificity statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:11 as
	An assessment of gene prediction accuracy in large DNA sequences [My Copy] Genome Res, Vol. 10, No. 10. (Oct 2000), pp. 1631-1642. by R. Guigo, P. Agarwal, J. F. Abril, M. Burset, J. W. Fickett posted to genes of software composition reproducibility research 1001 humans non-us results structuralgenetics support 20010228 computational dnachemistrygenetics artificialchemistrygenetics base biologymethods chromosomes govt by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:21 as
	Genome-wide detection of alternative splicing in expressed sequences of human genes [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (Jul 2001), pp. 2850-2859. by B. Modrek, A. Resch, C. Grasso, C. Lee posted to 1001 20010803 alignment alternative antigenschemistrygenetics base biology computational consensus conserved databases exonsgenetics expressed familygenetics genesgenetics genome genomics govt hla-d human humans internet intronsgenetics kinasesgenetics messengeranalysisgenetics multigene non-phs non-us nucleotidegenetics of polymorphism protein-serine-threonine reproducibility research results rna sequence sequencegenetics single sitesgenetics splice splicinggenetics support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:57 as
	A genomic view of alternative splicing [My Copy] Nat Genet, Vol. 30, No. 1. (Jan 2002), pp. 13-19. by B. Modrek, C. Lee posted to 1001 20020205 alternative analysis animals array biology computational dnagenetics expressed false forecasting genetics genomics govt humans isoformsgenetics messengergenetics non-phs oligonucleotide positive protein reactions research rna sequence splicing support tags us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	Analysis of canonical and non-canonical splice sites in mammalian genomes [My Copy] Nucleic Acids Res, Vol. 28, No. 21. (Nov 2000), pp. 4364-4375. by M. Burset, I. A. Seledtsov, V. V. Solovyev posted to 1001 20010228 animals base biology computational consensus conserved databases exonsgenetics expressed genome govt humans intronsgenetics non-us of reproducibility research results rna sequence sequencegenetics sitesgenetics software splice splicinggenetics support tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	BLAT--the BLAST-like alignment tool [My Copy] Genome Res, Vol. 12, No. 4. (Apr 2002), pp. 656-664. by W. J. Kent posted to 1001 20020427 alignmentmethodsstatistics animals biologymethodsstatistics computational data dnagenetics genetic govt human messengergenetics mice numerical phs proteinschemistry rna sequence software support translation us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:54 as
	Computational identification of promoters and first exons in the human genome [My Copy] Nat Genet, Vol. 29, No. 4. (Dec 2001), pp. 412-417. by R. V. Davuluri, I. Grosse, M. Q. Zhang posted to 1001 20020105 21 22 chromosomes cpg exons genetics genome govt human islands non-us pair phs promoter regions support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:53 as
	Evaluation of gene-finding programs on mammalian sequences [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 817-832. by S. Rogic, A. K. Mackworth, F. B. Ouellette posted to 1001 20010629 analysis animals base comparative composition cytosineanalysis dnamethods exonsgenetics functions genes genetic govt guanineanalysis human likelihood models non-us phylogeny sequence software species specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:49 as
	GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [My Copy] Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618. by J. Besemer, A. Lomsadze, M. Borodovsky posted to 1001 20010728 algorithms alignment and archaeal archaealgenetics bacillus bacterial bacterialgenetics base biologymethods chains codon coligenetics computational computer databases escherichia evolution framesgenetics functions genes geneticgenetics genome initiatorgenetics internet likelihood markov molecular of open overlappinggenetics reading reproducibility results sensitivity sequence simulation software specificity subtilisgenetics transcription translation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as
	Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae [My Copy] Nucleic Acids Res, Vol. 30, No. 5. (Mar 2002), pp. 1233-1239. by C. T. Webb, S. A. Shabalina, A. Y. Ogurtsov, A. S. Kondrashov posted to 1001 20020312 acid analysis animals base caenorhabditis caenorhabditisgenetics comparative data dna elegansgenetics gc govt helminthanalysis homology intergenic molecular nucleic phs phylogeny regions rich sequence species specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:43 as
	Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions [My Copy] Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2581-2593. by T. A. Thanaraj, F. Clark posted to 1001 20010728 alignment alternative base consensus exonsgenetics expressed frequency gene govt human intronsgenetics messengerchemistrygeneticsmetabolism mutationgenetics non-us nuclearchemistrygeneticsmetabolism pairinggenetics precursorschemistrygeneticsmetabolism ribonucleoproteinsmetabolism rna sequence sequencegenetics sitesgenetics small splice spliceosomesmetabolism splicinggenetics support tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:37 as
	Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing [My Copy] Nucleic Acids Res, Vol. 30, No. 15. (Aug 2002), pp. 3360-3367. by T. Farrer, A. B. Roller, W. J. Kent, A. M. Zahler posted to 1001 20020820 alternative animals base caenorhabditis conserved elegansgenetics genes genetic govt helminth helminthchemistrymetabolism intronsphysiology models phs rna sequence splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:37 as
	A systematic approach to dynamic programming in bioinformatics [My Copy] Bioinformatics, Vol. 16, No. 8. (Aug 2000), pp. 665-677. by R. Giegerich posted to 1001 20010228 algorithms alignmentmethods biology computational govt non-us sequence software support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:37 as
	Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome [My Copy] Nucleic Acids Res, Vol. 29, No. 3. (Feb 2001), pp. 818-830. by P. M. Harrison, N. Echols, M. B. Gerstein posted to 1001 20010522 acid amino animals caenorhabditis chromosomesgenetics data dna elegansgenetics genes genome govt helminthgenetics molecular non-us pseudogenesgenetics sequence support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:35 as
	Large-scale transcriptional activity in chromosomes 21 and 22 [My Copy] Science, Vol. 296, No. 5569. (May 2002), pp. 916-919. by P. Kapranov, S. E. Cawley, J. Drenkow, et al.S. Bekiranov, R. L. Strausberg, S. P. Fodor, T. R. Gingeras posted to 1001 20020531 21genetics 22genetics analysis array biology cell cells chain chromosome chromosomes complementary computational contig cultured cytosolmetabolism digeorge dna exons genetic govt human line mapping messengergeneticsmetabolism non-us nucleusmetabolism oligonucleotide pair phs physical polymerase probes reaction reverse rna sequence support syndromegenetics transcriptase transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:33 as
	Non-coding RNAs: the architects of eukaryotic complexity [My Copy] EMBO Rep, Vol. 2, No. 11. (Nov 2001), pp. 986-991. by J. S. Mattick posted to 1001 20020131 animals cellsmetabolism chromatinmetabolism eukaryotic expression gene genetic genetics genome human introns phenotype rnageneticsmetabolismphysiology trans-activation transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:33 as
	Initial sequencing and analysis of the human genome [My Copy] Nature, Vol. 409, No. 6822. (Feb 2001), pp. 860-921. by E. S. Lander, L. M. Linton, B. Birren, et al.C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. Fitzhugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. Levine, P. Mcewan, K. Mckernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, Stange N. Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. Mcmurray, L. Matthews, S. Mercer, S. Milne, J. C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R. H. Waterston, R. K. Wilson, L. W. Hillier, J. D. Mcpherson, M. A. Marra, E. R. Mardis, L. A. Fulton, A. T. Chinwalla, K. H. Pepin, W. R. Gish, S. L. Chissoe, M. C. Wendl, K. D. Delehaunty, T. L. Miner, A. Delehaunty, J. B. Kramer, L. L. Cook, R. S. Fulton, D. L. Johnson, P. J. Minx, S. W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J. F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R. A. Gibbs, D. M. Muzny, S. E. Scherer, J. B. Bouck, E. J. Sodergren, K. C. Worley, C. M. Rives, J. H. Gorrell, M. L. Metzker, S. L. Naylor, R. S. Kucherlapati, D. L. Nelson, G. M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, D. R. Smith, Doucette L. Stamm, M. Rubenfield, K. Weinstock, H. M. Lee, J. Dubois, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. Yang, J. Yu, J. Wang, G. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Qin, R. W. Davis, N. A. Federspiel, A. P. Abola, M. J. Proctor, R. M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D. R. Cox, M. V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G. A. Evans, M. Athanasiou, R. Schultz, B. A. Roe, F. Chen, H. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W. R. Mccombie, de La, N. Dedhia, H. Blocker, K. Hornischer, G. Nordsiek, R. Agarwala, L. Aravind, J. A. Bailey, A. Bateman, S. Batzoglou, E. Birney, P. Bork, D. G. Brown, C. B. Burge, L. Cerutti, H. C. Chen, D. Church, M. Clamp, R. R. Copley, T. Doerks, S. R. Eddy, E. E. Eichler, T. S. Furey, J. Galagan, J. G. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. Jang, L. S. Johnson, T. A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W. J. Kent, P. Kitts, E. V. Koonin, I. Korf, D. Kulp, D. Lancet, T. M. Lowe, A. Mclysaght, T. Mikkelsen, J. V. Moran, N. Mulder, V. J. Pollara, C. P. Ponting, G. Schuler, J. Schultz, G. Slater, A. F. Smit, E. Stupka, J. Szustakowski, Thierry D. Mieg, Thierry J. Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y. I. Wolf, K. H. Wolfe, S. P. Yang, R. F. Yeh, F. Collins, M. S. Guyer, J. Peterson, A. Felsenfeld, K. A. Wetterstrand, A. Patrinos, M. J. Morgan, J. Szustakowki, P. de Jong, J. J. Catanese, K. Osoegawa, H. Shizuya, S. Choi, Y. J. Chen posted to 1001 20010327 acid analysis animals chromosome conserved cpg databases diseases dna dnamethods drug duplication elements evolution factual forecasting gc gene genes genetic genetics genome govt human inborn industry islands mapping medical molecular mutation non-phs non-us nucleic phs private project proteinsgenetics proteome public repetitive rich rnagenetics sector sequence sequences species specificity support transposable us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:23 as

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Group: Bioinformatics - with tag 1001 [27 articles] Export

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