Group: Bioinformatics - with tag amino [24 articles] Export Sort

Recent papers posted by members of the Bioinformatics group with tag amino

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	Nucleosome assembly protein-1 is a linker histone chaperone in Xenopus eggs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 23. (2005), pp. 8210-5. by K. Shintomi, M. Iwabuchi, H. Saeki, K. Ura, T. Kishimoto, K. Ohsumi posted to govt female extracts disassembly data cycle chromatin chaperonesmetabolism cell assembly animals and amino acid genome-chromatin xenopusmetabolism support spermatozoametabolism sequence research proteinsgeneticsmetabolism proteins oocytesmetabolism nucleosomeschemistrymetabolism nuclear non-us molecular male histonesmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Solution structure of the SWIRM domain of human histone demethylase LSD1. [My Copy] Structure, Vol. 14, No. 3. (2006), pp. 457-68. by N. Tochio, T. Umehara, S. Koshiba, et al.M. Inoue, T. Yabuki, M. Aoki, E. Seki, S. Watanabe, Y. Tomo, M. Hanada, M. Ikari, M. Sato, T. Terada, T. Nagase, O. Ohara, M. Shirouzu, A. Tanaka, T. Kigawa, S. Yokoyama posted to specificity sequence research proteins protein oxidoreductases non-us n-demethylatingchemistrygenetics motifs molecular models histonesanalysismetabolism helix-turn-helix govt factorsanalysischemistry factors dna-binding disassembly data conformation chromatin assembly and amino acid genome-chromatin transcription time tertiary support substrate structure by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as along with 1 group ProkaryoteInterestGroup
	Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins. [My Copy] J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35. by T. Ichimura, S. Watanabe, Y. Sakamoto, T. Aoto, N. Fujita, M. Nakao posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	H2AX: tailoring histone H2A for chromatin-dependent genomic integrity. [My Copy] Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15. by A. Li, Eirin J. M. Lopez, J. Ausio posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	The transcriptional activity of human Chromosome 22 [My Copy] Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540. by J. L. Rinn, G. Euskirchen, P. Bertone, et al.R. Martone, N. M. Luscombe, S. Hartman, P. M. Harrison, F. K. Nelson, P. Miller, M. Gerstein, S. Weissman, M. Snyder posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as
	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs [My Copy] Nature, Vol. 420, No. 6915. (Dec 2002), pp. 563-573. by Y. Okazaki, M. Furuno, T. Kasukawa, et al.J. Adachi, H. Bono, S. Kondo, I. Nikaido, N. Osato, R. Saito, H. Suzuki, I. Yamanaka, H. Kiyosawa, K. Yagi, Y. Tomaru, Y. Hasegawa, A. Nogami, C. Schonbach, T. Gojobori, R. Baldarelli, D. P. Hill, C. Bult, D. A. Hume, J. Quackenbush, L. M. Schriml, A. Kanapin, H. Matsuda, S. Batalov, K. W. Beisel, J. A. Blake, D. Bradt, V. Brusic, C. Chothia, L. E. Corbani, S. Cousins, E. Dalla, T. A. Dragani, C. F. Fletcher, A. Forrest, K. S. Frazer, T. Gaasterland, M. Gariboldi, C. Gissi, A. Godzik, J. Gough, S. Grimmond, S. Gustincich, N. Hirokawa, I. J. Jackson, E. D. Jarvis, A. Kanai, H. Kawaji, Y. Kawasawa, R. M. Kedzierski, B. L. King, A. Konagaya, I. V. Kurochkin, Y. Lee, B. Lenhard, P. A. Lyons, D. R. Maglott, L. Maltais, L. Marchionni, L. Mckenzie, H. Miki, T. Nagashima, K. Numata, T. Okido, W. J. Pavan, G. Pertea, G. Pesole, N. Petrovsky, R. Pillai, J. U. Pontius, D. Qi, S. Ramachandran, T. Ravasi, J. C. Reed, D. J. Reed, J. Reid, B. Z. Ring, M. Ringwald, A. Sandelin, C. Schneider, C. A. Semple, M. Setou, K. Shimada, R. Sultana, Y. Takenaka, M. S. Taylor, R. D. Teasdale, M. Tomita, R. Verardo, L. Wagner, C. Wahlestedt, Y. Wang, Y. Watanabe, C. Wells, L. G. Wilming, Wynshaw A. Boris, M. Yanagisawa, I. Yang, L. Yang, Z. Yuan, M. Zavolan, Y. Zhu, A. Zimmer, P. Carninci, N. Hayatsu, Hirozane T. Kishikawa, H. Konno, M. Nakamura, N. Sakazume, K. Sato, T. Shiraki, K. Waki, J. Kawai, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, A. Miyazaki, K. Sakai, D. Sasaki, K. Shibata, A. Shinagawa, A. Yasunishi, M. Yoshino, R. Waterston, E. S. Lander, J. Rogers, E. Birney, Y. Hayashizaki posted to 0400 20021228 acid alternative amino animals antisensegenetics chromosome chromosomes cloning complementarygenetics databases dna expressed genesgenetics genetic geneticgenetics genomicsmethods govt humans initiation mammaliangenetics mapping membrane messengeranalysisgenetics micegenetics molecular motifs non-us physical protein proteinsgenetics proteomechemistrygenetics research rna sequence site splicinggenetics structure support tags tertiary transcription untranslatedanalysisgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:45 as
	Sequence logos: a new way to display consensus sequences [My Copy] Nucleic Acids Res, Vol. 18, No. 20. (Oct 1990), pp. 6097-6100. by T. D. Schneider, R. M. Stephens posted to 0001 19901025 acid amino bacteriophage base binding chromosome coligenetics data deletion dna dna-directed elements escherichia genes genetic globinsgenetics govt humans lambdagenetics molecular non-us phs polymerasesmetabolism research rna sequence sites support t-phagesenzymologygenetics techniques transposable us viral by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:35 as
	Functions and mechanisms of RNA editing [My Copy] Annu Rev Genet, Vol. 34 (2000), pp. 499-531. by J. M. Gott, R. B. Emeson posted to 1001 20010307 acid amino base conformation data editing homology messengerchemistrygenetics molecular nucleic rna sequence transferchemistrygenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:21 as
	The Ensembl automatic gene annotation system [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 942-950. by V. Curwen, E. Eyras, T. D. Andrews, et al.L. Clarke, E. Mongin, S. M. Searle, M. Clamp posted to 0500 biologymethods computational helminth helminthgenetics helminthphysiology mice structural support tandem tests 20040818 acid dnagenetics dosage human proteinsgenetics pseudogenesgenetics sequence tags untranslated us value animals anophelesgenetics caenorhabditisgenetics comparative genome homology insect insectphysiology non-us predictive rats regionsgenetics repeat sequencesgenetics amino dna gene govt of phs software study alignmentmethods automation expressed genes humans research structuralphysiology by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:49 as
	Hidden Markov models for sequence analysis: extension and analysis of the basic method [My Copy] Comput Appl Biosci, Vol. 12, No. 2. (Apr 1996), pp. 95-107. by R. Hughey, A. Krogh posted to amino factual models 0001 algorithms chains studies alignmentmethodsstatistics evaluation govt homology non-us sequence acid analysismethodsstatistics data domainsgenetics humans markov numerical src statistical support us 19960401 animals base databases non-phs research software by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:09 as
	Increase of functional diversity by alternative splicing [My Copy] Trends Genet, Vol. 19, No. 3. (Mar 2003), pp. 124-128. by E. V. Kriventseva, I. Koch, R. Apweiler, et al.M. Vingron, P. Bork, M. S. Gelfand, S. Sunyaev posted to 0500 20030605 acid acidsmetabolism alternative amino animals biology computational databases genetics humans isoformsanalysischemistry ligands models molecular protein selection sequence splicing structure tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:56 as
	Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences [My Copy] Trends Genet, Vol. 19, No. 3. (Mar 2003), pp. 115-119. by F. A. Kondrashov, E. V. Koonin posted to 0500 20030605 acid alternative amino animals conserved data evolution genetic homology human introns isoformschemistrygenetics models molecular protein proteinschemistry sequence splicinggenetics structure tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:43 as
	Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome [My Copy] Nucleic Acids Res, Vol. 29, No. 3. (Feb 2001), pp. 818-830. by P. M. Harrison, N. Echols, M. B. Gerstein posted to 1001 20010522 acid amino animals caenorhabditis chromosomesgenetics data dna elegansgenetics genes genome govt helminthgenetics molecular non-us pseudogenesgenetics sequence support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:35 as
	Molecular phylogenetics of Poaceae: an expanded analysis of rbcL sequence data. [My Copy] Mol Phylogenet Evol, Vol. 5, No. 2. (Apr 1996), pp. 352-8. by M. R. Duvall, B. R. Morton posted to 8728393 acid acids africa alignment amino analysis animals arabidopsis base caenorhabditis carboxylase cattle chain climate coli comparative components d-aspartate-l-isoaspartate data dna drosophila dynamics elegans environment escherichia evolution factors genetic genome geography gluten govt humans mays melanogaster methyltransferase methyltransferases mice molecular non-phs non-us phs phylogeny plant plants poaceae polymerase polymorphism population primers protein rats reaction research ribosomal ribulose-bisphosphate sequence south starch study support synthase time triticum us weight zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:26 as along with 2 groups biodiversity_conservation GrassBase
	Slipped-strand mispairing in a plastid gene: rpoC2 in grasses (Poaceae). [My Copy] Mol. Biol. Evol., Vol. 11, No. 1. (Jan 1994), pp. 1-8. by M. P. Cummings, L. M. King, E. A. Kellogg posted to 5s 8121278 acid aerobiosis alcohol alignment amino anaerobiosis angiosperms animals arabidopsis base c cell cereals cerevisiae chloroplasts comparative complex conformation cytochrome data dehydrogenase diploidy dna dna-directed electron enzyme evolution expression family fungal fungi gene genes genetic genetics govt group haplotypes homeobox homeodomain homology humans immunoglobulin induction iv kinetics mays models molecular multigene mutation non-phs non-us nucleic nucleus oxygen phs phylogeny plant plants plastids poaceae polymerases polymorphism primers protein proteins region regulation repetitive research ribosomal rna saccharomyces secondary selection sequence sequences species specificity structural structure study support transcription transport triticum us variable variation zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as along with 2 groups biodiversity_conservation GrassBase
	Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. [My Copy] Mol Phylogenet Evol, Vol. 8, No. 2. (Oct 1997), pp. 150-66. by P. Catalán, E. A. Kellogg, R. G. Olmstead posted to 9299221 acid amino angiosperms animals base chloroplasts comparative data dna evolution family fungi genes genetic genetics govt homeobox homeodomain homology humans models molecular multigene non-phs non-us phylogeny plant poaceae primers protein proteins research secondary sequence structure study support us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:17 as along with 2 groups biodiversity_conservation GrassBase
	Effects of oxygen concentration on the expression of cytochrome c and cytochrome c oxidase genes in yeast. [My Copy] J. Biol. Chem., Vol. 272, No. 23. (Jun 1997), pp. 14705-12. by P. V. Burke, D. C. Raitt, L. A. Allen, E. A. Kellogg, R. O. Poyton posted to induction iv kinetics mays models molecular multigene non-phs non-us nucleus oxygen phs phylogeny plant plants poaceae primers protein proteins regulation research saccharomyces secondary sequence structure study support transcription transport us variation zea bibtex-import 9169434 acid aerobiosis amino anaerobiosis angiosperms animals base c cell cerevisiae chloroplasts comparative complex cytochrome data dna electron enzyme evolution expression family fungal fungi gene genes genetic genetics govt group homeobox homeodomain homology humans by kehan to the group Bioinformatics on 2006-07-13 16:23:16 as along with 2 groups biodiversity_conservation GrassBase
	Zea systematics: ribosomal ITS evidence. [My Copy] Mol. Biol. Evol., Vol. 13, No. 4. (Apr 1996), pp. 612-22. by E. S. Buckler, T. P. Holtsford posted to 8882504 acid acids africa alignment amino analysis animals arabidopsis base caenorhabditis cattle climate coli comparative components d-aspartate-l-isoaspartate data dna drosophila dynamics elegans environment escherichia evolution factors genetic genome geography gluten govt humans mays melanogaster methyltransferase methyltransferases mice molecular non-phs non-us phs phylogeny plant poaceae polymorphism population protein rats research ribosomal sequence south starch study support synthase time triticum us weight zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:15 as along with 2 groups biodiversity_conservation GrassBase
	Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa? [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 94, No. 25. (Dec 1997), pp. 13749-53. by G. Bharathan, B. J. Janssen, E. A. Kellogg, N. Sinha posted to 9391098 acid amino angiosperms animals comparative data evolution family fungi genes genetic govt homeobox homeodomain homology humans models molecular multigene non-phs non-us phylogeny protein proteins research secondary sequence structure study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:13 as along with 2 groups biodiversity_conservation GrassBase
	Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins. [My Copy] Mol. Biol. Evol., Vol. 16, No. 4. (Apr 1999), pp. 553-63. by G. Bharathan, B. J. Janssen, E. A. Kellogg, N. Sinha posted to trait us variance variation bibtex-import synthase 10331280 acid alignment amino analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules homeobox homeodomain homology leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny theorem by kehan to the group Bioinformatics on 2006-07-13 16:23:11 as along with 2 groups biodiversity_conservation GrassBase
	The Universal Protein Resource (UniProt). [My Copy] Nucleic Acids Res., Vol. 33, No. Database issue. (Jan 2005), pp. D154-9. by Amos Bairoch, Rolf Apweiler, Cathy H. Wu, et al.Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai posted to 15608167 acid amino databases govt integration interface non-phs non-us phs protein proteins research sequence support systems us user-computer bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:22:57 as along with 2 groups biodiversity_conservation GrassBase

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Group: Bioinformatics - with tag amino [24 articles] Export Sort

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