Group: Bioinformatics - with tag and [61 articles] Export

Recent papers posted by members of the Bioinformatics group with tag and

	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted to analysis and cluster filtering for genes network by dswan to the group Bioinformatics on 2009-07-10 10:56:46 as along with 6 people zufar shikin lwaldron rdiaz bertelsen erexhepa
	Genomic surgery for lung cancer. [My Copy] J Surg Res, Vol. 117, No. 1. (2004), pp. 107-13. by D. S. Schrump posted to genome-chromatin use therapygeneticstherapy regulation peptides neoplasticdrug neoplasmsdrug methylation lung humans histone genetic gene expression engineeringmethods effects dna disassemblydrug derivativespharmacologytherapeutic depsipeptides deacetylases cyclicpharmacologytherapeutic chromatin azacitidineanalogs assembly antineoplastic animals and agentspharmacologytherapeutic by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as along with 1 group ProkaryoteInterestGroup
	Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. [My Copy] Mol Cell, Vol. 15, No. 4. (2004), pp. 595-605. by S. A. Sarraf, I. Stancheva posted to macromolecular lysinemetabolism islands interferingmetabolism humans histonesmetabolism hela govt genetics gene factors dna-binding dna disassembly cpg chromatin cells carrier biological assembly and genome-chromatin two-hybrid transcription techniques system support substances small silencing s rna research replication regions proteinsmetabolism proteinsgeneticsmetabolism proteinsgenetics protein promoter phase non-us models methyltransferasesmetabolism methylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:48 as along with 1 group ProkaryoteInterestGroup
	[How the methyl-CpG binding protein-related epigenetic disease turns on the genes that produce its symptoms] [My Copy] Tanpakushitsu Kakusan Koso, Vol. 50, No. 8. (2005), pp. 978-84. by S. Horike posted to genome-chromatin transcription syndromegenetics rett repressor proteinsgenetics proteins protein non-histonegenetics mutation methyl-cpg-binding imprintinggenetics humans homeodomain histones genomic female factors dna-binding disassemblygenetics chromosomal chromatingenetics chromatin assembly animals and 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:47 as along with 1 group ProkaryoteInterestGroup
	Chromatin organization during spermiogenesis in Octopus vulgaris. I: Morphological structures. [My Copy] Mol Reprod Dev, Vol. 68, No. 2. (2004), pp. 223-31. by E. Ribes, Gimenez P. Bonafe, Martinez F. Soler, et al.A. Gonzalez, N. Saperas, H. E. Kasinsky, M. Chiva posted to genome-chromatin support spermatogenesisphysiology research octopodiformesphysiology nuclear non-us matrixmetabolism male govt disassemblyphysiology chromatinphysiology chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:45 as along with 1 group ProkaryoteInterestGroup
	The marks, mechanisms and memory of epigenetic states in mammals. [My Copy] Biochem J, Vol. 356, No. Pt 1. (2001), pp. 1-10. by V. K. Rakyan, J. Preis, H. D. Morgan, E. Whitelaw posted to methylation mammalsgenetics intercellular imprinting govt genomic genetic gene expression dosage dna compensation chromatinmetabolism animals and genome-chromatin support signaling research repressor regulation proteins peptides non-us models mice by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:44 as along with 1 group ProkaryoteInterestGroup
	Gene targeting in plants: fingers on the move. [My Copy] Trends Plant Sci, Vol. 11, No. 4. (2006), pp. 159-61. by S. Kumar, G. C. Allen, W. F. Thompson posted to genome-chromatin zinc us targetingmethods support research repair recombination plantsgenetics plant non-us non-phs govt genome genetic gene fingersphysiology endodeoxyribonucleaseschemistrymetabolism dna disassembly chromatin assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Nucleosome assembly protein-1 is a linker histone chaperone in Xenopus eggs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 23. (2005), pp. 8210-5. by K. Shintomi, M. Iwabuchi, H. Saeki, K. Ura, T. Kishimoto, K. Ohsumi posted to govt female extracts disassembly data cycle chromatin chaperonesmetabolism cell assembly animals and amino acid genome-chromatin xenopusmetabolism support spermatozoametabolism sequence research proteinsgeneticsmetabolism proteins oocytesmetabolism nucleosomeschemistrymetabolism nuclear non-us molecular male histonesmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	The radioresistance kinase TLK1B protects the cells by promoting repair of double strand breaks. [My Copy] BMC Mol Biol, Vol. 6 (2005) by Sunavala G. Dossabhoy, S. K. Balakrishnan, S. Sen, S. Nuthalapaty, A. De Benedetti posted to genome-chromatin transfection tolerance support research repair radiation protein-serine-threonine plasmids phosphorylation non-us line kinasesgeneticsphysiology ionizing humans histonesmetabolism govt dna disassembly damage chromatin cell assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis. [My Copy] Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5. by F. Magdinier, S. G. D'Estaing, C. Peinado, et al.B. Demirci, C. Berthet, J. F. Guerin, R. Dante posted to genome-chromatin tumor suppressor support spermatozoametabolism research regulation protein p53genetics oocytesmetabolism non-us mice methylation male kinetics islandsgenetics humans govt genes gene fetal female expression embryonic dna developmentgenetics developmental cpg brca1 blastocystmetabolism animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes. [My Copy] Methods, Vol. 33, No. 1. (2004), pp. 81-5. by N. Fujita, P. A. Wade posted to genome-chromatin regions reagents promoter mappingmethods humans genomicsmethods genetics disassemblygeneticsphysiology cultured cross-linking chromosome chromatingeneticsphysiology chromatin cells assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as along with 1 group ProkaryoteInterestGroup
	Solution structure of the SWIRM domain of human histone demethylase LSD1. [My Copy] Structure, Vol. 14, No. 3. (2006), pp. 457-68. by N. Tochio, T. Umehara, S. Koshiba, et al.M. Inoue, T. Yabuki, M. Aoki, E. Seki, S. Watanabe, Y. Tomo, M. Hanada, M. Ikari, M. Sato, T. Terada, T. Nagase, O. Ohara, M. Shirouzu, A. Tanaka, T. Kigawa, S. Yokoyama posted to specificity sequence research proteins protein oxidoreductases non-us n-demethylatingchemistrygenetics motifs molecular models histonesanalysismetabolism helix-turn-helix govt factorsanalysischemistry factors dna-binding disassembly data conformation chromatin assembly and amino acid genome-chromatin transcription time tertiary support substrate structure by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as along with 1 group ProkaryoteInterestGroup
	A heterochromatin barrier partitions the fission yeast centromere into discrete chromatin domains. [My Copy] Curr Biol, Vol. 16, No. 2. (2006), pp. 119-29. by K. C. Scott, S. L. Merrett, H. F. Willard posted to genome-chromatin transfer support site-directed silencing sequence segregationgeneticsphysiology schizosaccharomycescytologygeneticsgrowth rna research regulation non-us mutagenesis molecular meiosisphysiology heterochromatinchemistrygeneticsphysiology govt gene fungal expression disassembly development deletion data chromosome chromatin centromerechemistrygenetics base assembly and alagenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:40 as along with 1 group ProkaryoteInterestGroup
	Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. [My Copy] J Biol Chem, Vol. 281, No. 14. (2006), pp. 9560-8. by N. Schonrock, V. Exner, A. Probst, W. Gruissem, L. Hennig posted to genome-chromatin transcription support silencing research proteinsbiosynthesisgenetics proteins profiling non-us non-histonebiosynthesisgenetics mutational molecular heterochromatinmetabolism govt genetic gene expression dna-binding dna disassemblygenetics chromosomal chromatin chaperones assembly arabidopsisgenetics and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:39 as along with 1 group ProkaryoteInterestGroup
	Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements. [My Copy] Mol Cell Biol, Vol. 25, No. 7. (2005), pp. 2698-707. by A. Dhasarathy, M. P. Kladde posted to genome-chromatin us transcription trans-activatorsmetabolism time support sites saccharomyces research regulation regions proteinsmetabolism proteinsgeneticsmetabolism protein promoter phs phosphatespharmacology nuclear non-us kinasesmetabolism immunoprecipitation histone govt geneticsgenetics gene fungal factorsmetabolism factors expression effectsenzymologygenetics dna-binding disassembly chromatingeneticsmetabolism chromatin cerevisiaedrug cerevisiae binding assembly and acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:38 as along with 1 group ProkaryoteInterestGroup
	[Transcriptome and non-coding RNAs: so many mRNA-like non-coding RNAs are really functional?] [My Copy] Tanpakushitsu Kakusan Koso, Vol. 49, No. 16. (2004), pp. 2521-8. by A. Kanai posted to genome-chromatin untranslatedclassificationgeneticsphysiology transcription sequence rna reading open messenger imprintinggenetics humans genomic geneticgenetics genetic frames dosage dna disassemblygenetics computational complementary compensation chromatin biology assembly antisense animals and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:36 as along with 1 group ProkaryoteInterestGroup
	Poly(ADP-ribosyl)ated chromatin domains: access granted. [My Copy] J Cell Sci, Vol. 117, No. Pt 6. (2004), pp. 815-25. by M. Rouleau, R. A. Aubin, G. G. Poirier posted to genome-chromatin transcription support ribosemetabolism research proteins polymerases polyadp-ribose poly nucleusmetabolism nucleic non-us non-histonemetabolism nadmetabolism humans histonesmetabolism govt genetic dnametabolism disassemblyphysiology diphosphate conformation chromosomesmetabolism chromosomal chromatinmetabolism chromatin cell assembly apoptosisphysiology animals and adenosine acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:35 as along with 1 group ProkaryoteInterestGroup
	Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins. [My Copy] J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35. by T. Ichimura, S. Watanabe, Y. Sakamoto, T. Aoto, N. Fujita, M. Nakao posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. [My Copy] Genes Dev, Vol. 19, No. 14. (2005), pp. 1656-61. by B. Chai, J. Huang, B. R. Cairns, B. C. Laurent posted to genome-chromatin us triphosphatemetabolism transcription temperature support saccharomyces research repair recombination proteinsgeneticsmetabolism phs nih mutation kinetics govt genetic genes fungal factorsgeneticsmetabolism extramural dna-binding dna disassembly chromatin cerevisiaegeneticsmetabolism cerevisiae assembly and adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent chromatin-remodeling complexes in DNA double-strand break repair: remodeling, pairing and (re)pairing. [My Copy] Cell Cycle, Vol. 4, No. 12. (2005), pp. 1713-5. by J. Huang, B. Liang, J. Qiu, B. C. Laurent posted to genome-chromatin triphosphatemetabolism support research repair pairing nih multiprotein extramural dna disassembly damage complexesmetabolism chromosome chromatingeneticsmetabolism chromatin assembly animals and adenosinetriphosphatasemetabolism adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:30 as along with 1 group ProkaryoteInterestGroup
	Transition nuclear proteins are required for normal chromatin condensation and functional sperm development. [My Copy] Genesis, Vol. 38, No. 4. (2004), pp. 200-13. by M. Zhao, C. R. Shirley, S. Hayashi, et al.L. Marcon, B. Mohapatra, R. Suganuma, R. R. Behringer, G. Boissonneault, R. Yanagimachi, M. L. Meistrich posted to genome fluorescence disassembly developmentmetabolismpathology chromosomal chromatingeneticsmetabolism chromatin assembly animals and agingphysiology genome-chromatin us support spermatozoacytologygrowth spermatogenesis research proteins protaminesmetabolism phs non-us non-histonedeficiencygeneticsmetabolism mutationgenetics microscopy mice malegeneticspathology male knockout infertility histonesmetabolism govt by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:29 as along with 1 group ProkaryoteInterestGroup
	H2AX: tailoring histone H2A for chromatin-dependent genomic integrity. [My Copy] Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15. by A. Li, Eirin J. M. Lopez, J. Ausio posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as along with 1 group ProkaryoteInterestGroup
	Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila. [My Copy] Methods Mol Biol, Vol. 287 (2004), pp. 151-68. by M. D. Garfinkel, V. E. Sollars, X. Lu, D. M. Ruden posted to genome-chromatin us trait testsmethods techniques support selection research quantitative proteinsantagonists precipitin phs non-us molecular methylation male loci inhibitors hydroxamic hsp90 histonesanalysismetabolism heat-shock govt genetics genetic female epigenesis drosophilagenetics dna disassembly chromatin biologymethods assembly animals and acidspharmacology acetylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:26 as along with 1 group ProkaryoteInterestGroup
	FGF2-induced chromatin remodeling regulates CNTF-mediated gene expression and astrocyte differentiation. [My Copy] Nat Neurosci, Vol. 7, No. 3. (2004), pp. 229-35. by M. R. Song, A. Ghosh posted to genome-chromatin us transductiondrug transcription trans-activatorsdrug support stem stat1 signal research regulation regions rats proteinsdrug proteindrug promoter phs non-us neurotrophic methylationdrug lysinemetabolism histonesdrug growth govt glial geneticsdrug gene fibroblast fibrillary fetus factorsdrug factormetabolismpharmacology factor expression effectsmetabolism effectsgeneticsmetabolism effectsgenetics effects dna-binding disassemblydrug differentiationdrug developmentaldrug cultured cortexcytologyembryologymetabolism ciliary chromatin cerebral cellscytologydrug cells cell astrocytescytologydrug assembly animals and acidic 2metabolismpharmacology by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:24 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin. [My Copy] J Cell Biochem, Vol. 91, No. 6. (2004), pp. 1087-98. by S. Sif posted to non-us neoplasmsmetabolism humans govt geneticphysiology gene expression drosophila dnametabolism divisionphysiology disassemblyphysiology chromatin cerevisiae cell assembly animals and adenosine genome-chromatin us triphosphatemetabolism transcription support saccharomyces research regulation proteinsmetabolism phs nucleosomesmetabolism nuclear by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:23 as along with 1 group ProkaryoteInterestGroup
	TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. [My Copy] Genes Dev, Vol. 19, No. 8. (2005), pp. 955-64. by N. Bachman, M. E. Gelbart, T. Tsukiyama, J. D. Boeke posted to genome-chromatin us transfergenetics transcription tfiiibgenetics support subunitsgenetics study specificity species saccharomyces rna retroelementsgenetics research recombination reaction proteinsgenetics protein primers polymerase phs nucleosomesgeneticsmetabolism nih immunoprecipitation govt geneticgenetics factorsgenetics factor extramural dna disassemblygenetics comparative chromatin chain cerevisiaegenetics cerevisiae assembly and adenosinetriphosphatasegenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:22 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent chromatin remodeling and DNA double-strand break repair. [My Copy] Cell Cycle, Vol. 4, No. 8. (2005), pp. 1011-4. by H. van Attikum, S. M. Gasser posted to adenosine genome-chromatin triphosphatechemistry transcription support saccharomyces research repair recombination proteinschemistry phosphorylation nucleosomeschemistrymetabolism non-us models histoneschemistry govt genetic factorschemistry dnachemistry dna-binding dna disassembly damage chromatinchemistry chromatin cerevisiae biological assembly arabidopsismetabolism and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	The role of mammalian DNA methyltransferases in the regulation of gene expression. [My Copy] Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47. by Turek J. Plewa, P. P. Jagodzinski posted to genome-chromatin transcription support research regulation protein non-us isoforms humans govt genetic gene expression epigenesis dna disassembly cytosine-5--methyltransferasechemistrymetabolism chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	Chromatin remodeling and the maintenance of genome integrity. [My Copy] Biochim Biophys Acta, Vol. 1677, No. 1-3. (2004), pp. 158-64. by S. Allard, J. Y. Masson, J. Cote posted to genome-chromatin variation u1 triphosphatemetabolism support substances small rna-binding ribonucleoprotein research repairgenetics proteins nucleargeneticsmetabolism non-us macromolecular humans histonesgeneticsmetabolism histone govt genome genetics drosophila dna disassembly chromatin assembly animals and adenosine acetyltransferasesgeneticsmetabolism acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:12 as along with 1 group ProkaryoteInterestGroup
	Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. [My Copy] Curr Biol, Vol. 16, No. 5. (2006), pp. 486-92. by P. E. Jullien, A. Katz, M. Oliva, N. Ohad, F. Berger posted to genome-chromatin us support silencing seedsgeneticsmetabolism research repressor regulation proteinsmetabolismphysiology proteinsgeneticsmetabolism protein processing post-translational plant non-us non-phs models methylation imprinting immunoprecipitation histonesmetabolism govt genomic genetic gene expression disassembly development chromatin assembly arabidopsisembryologygeneticsgrowth arabidopsis and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:11 as along with 1 group ProkaryoteInterestGroup
	RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription. [My Copy] Nature, Vol. 435, No. 7046. (2005), pp. 1275-9. by V. Schramke, D. M. Sheedy, A. M. Denli, et al.C. Bonila, K. Ekwall, G. J. Hannon, R. C. Allshire posted to genome-chromatin viral transcription support small schizosaccharomycesenzymologygenetics schizosaccharomyces rna ribonucleasesmetabolism research regulation proteinsmetabolism protein pombe polymerasesmetabolism polymerase non-us interferinggeneticsmetabolism interference iichemistrymetabolism govt genetic gene fungal expression dna-directed disassembly chromatingeneticsmetabolism chromatin centromeregeneticsmetabolism binding assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:10 as along with 1 group ProkaryoteInterestGroup
	Stochastic models inspired by hybridization theory for short oligonucleotide arrays [My Copy] J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893. by Z. Wu, R. A. Irizarry posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	Complete sequencing and characterization of 21,243 full-length human cDNAs [My Copy] Nat Genet, Vol. 36, No. 1. (Jan 2004), pp. 40-45. by T. Ota, Y. Suzuki, T. Nishikawa, et al.T. Otsuki, T. Sugiyama, R. Irie, A. Wakamatsu, K. Hayashi, H. Sato, K. Nagai, K. Kimura, H. Makita, M. Sekine, M. Obayashi, T. Nishi, T. Shibahara, T. Tanaka, S. Ishii, J. Yamamoto, K. Saito, Y. Kawai, Y. Isono, Y. Nakamura, K. Nagahari, K. Murakami, T. Yasuda, T. Iwayanagi, M. Wagatsuma, A. Shiratori, H. Sudo, T. Hosoiri, Y. Kaku, H. Kodaira, H. Kondo, M. Sugawara, M. Takahashi, K. Kanda, T. Yokoi, T. Furuya, E. Kikkawa, Y. Omura, K. Abe, K. Kamihara, N. Katsuta, K. Sato, M. Tanikawa, M. Yamazaki, K. Ninomiya, T. Ishibashi, H. Yamashita, K. Murakawa, K. Fujimori, H. Tanai, M. Kimata, M. Watanabe, S. Hiraoka, Y. Chiba, S. Ishida, Y. Ono, S. Takiguchi, S. Watanabe, M. Yosida, T. Hotuta, J. Kusano, K. Kanehori, Takahashi A. Fujii, H. Hara, T. O. Tanase, Y. Nomura, S. Togiya, F. Komai, R. Hara, K. Takeuchi, M. Arita, N. Imose, K. Musashino, H. Yuuki, A. Oshima, N. Sasaki, S. Aotsuka, Y. Yoshikawa, H. Matsunawa, T. Ichihara, N. Shiohata, S. Sano, S. Moriya, H. Momiyama, N. Satoh, S. Takami, Y. Terashima, O. Suzuki, S. Nakagawa, A. Senoh, H. Mizoguchi, Y. Goto, F. Shimizu, H. Wakebe, H. Hishigaki, T. Watanabe, A. Sugiyama, M. Takemoto, B. Kawakami, M. Yamazaki, K. Watanabe, A. Kumagai, S. Itakura, Y. Fukuzumi, Y. Fujimori, M. Komiyama, H. Tashiro, A. Tanigami, T. Fujiwara, T. Ono, K. Yamada, Y. Fujii, K. Ozaki, M. Hirao, Y. Ohmori, A. Kawabata, T. Hikiji, N. Kobatake, H. Inagaki, Y. Ikema, S. Okamoto, R. Okitani, T. Kawakami, S. Noguchi, T. Itoh, K. Shigeta, T. Senba, K. Matsumura, Y. Nakajima, T. Mizuno, M. Morinaga, M. Sasaki, T. Togashi, M. Oyama, H. Hata, M. Watanabe, T. Komatsu, Mizushima J. Sugano, T. Satoh, Y. Shirai, Y. Takahashi, K. Nakagawa, K. Okumura, T. Nagase, N. Nomura, H. Kikuchi, Y. Masuho, R. Yamashita, K. Nakai, T. Yada, Y. Nakamura, O. Ohara, T. Isogai, S. Sugano posted to 0500 20 20040203 21-22 analysis and biology chromosomes comparative complementary computational dna frames govt human humans messenger non-us open pair reading research rna sequence study support y by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	A comprehensive transcript index of the human genome generated using microarrays and computational approaches [My Copy] Genome Biol, Vol. 5, No. 10. (2004) by E. E. Schadt, S. W. Edwards, D. Guhathakurta, et al.D. Holder, L. Ying, V. Svetnik, A. Leonardson, K. W. Hart, A. Russell, G. Li, G. Cavet, J. Castle, P. Mcdonagh, Z. Kan, R. Chen, A. Kasarskis, M. Margarint, R. M. Caceres, J. M. Johnson, C. D. Armour, Garrett P. W. Engele, N. F. Tsinoremas, D. D. Shoemaker posted to 0900 20050729 20genetics 22genetics analysis and array biology chromosomes computational conserved expression gene geneticgenetics genome human humans of oligonucleotide organ pair profiling reproducibility results sensitivity sequence sequencegenetics specificity transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as
	The UCSC Genome Browser Database [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (Jan 2003), pp. 51-54. by D. Karolchik, R. Baertsch, M. Diekhans, et al.T. S. Furey, A. Hinrichs, Y. T. Lu, K. M. Roskin, M. Schwartz, C. W. Sugnet, D. J. Thomas, R. J. Weber, D. Haussler, W. J. Kent posted to 0400 20030315 and animals california database databases genetic genome genomics govt human humans information management mice non-us phs research retrieval storage support systems us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	Finding genes in DNA with a Hidden Markov Model [My Copy] J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141. by J. Henderson, S. Salzberg, K. H. Fasman posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as
	Microbial gene identification using interpolated Markov models [My Copy] Nucleic Acids Res, Vol. 26, No. 2. (Jan 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted to 0001 19980228 algorithms alignment and bacterialanalysischemistry base chains dna frames govt haemophilus helicobacter influenzaegenetics markov non-phs open phs pylorigenetics reading research sensitivity sequence software specificity support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as
	GAZE: a generic framework for the integration of gene-prediction data by dynamic programming [My Copy] Genome Res, Vol. 12, No. 9. (Sep 2002), pp. 1418-1427. by K. L. Howe, T. Chothia, R. Durbin posted to 0400 20021031 acid algorithms alignment and animals biologymethodsstatistics caenorhabditis comparative computational data databases elegansgenetics factual forecastingmethods genes genetic genome govt helminthgenetics homology information internet models non-us nucleic numerical probability research retrievalstatistics rna sequence sites software storage structural study support tagged trans-splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:15 as
	Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions [My Copy] Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582. by C. Wei, P. Lamesch, M. Arumugam, et al.J. Rosenberg, P. Hu, M. Vidal, M. R. Brent posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	Integrating genomic homology into gene structure prediction [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S140-S148. by I. Korf, P. Flicek, D. Duan, M. R. Brent posted to 1001 20020228 acid algorithms alignmentstatistics and animals base biology comparative computational conserved data dnagenetics evolution genome govt homology human humans mice models molecular non-phs non-us nucleic numerical phs research sensitivity sequence specificity statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:11 as
	Predicting full-length transcripts [My Copy] Trends Biotechnol, Vol. 20, No. 7. (Jul 2002) by M. R. Brent posted to 0400 20021126 algorithms alignmentmethods analysis and animals conserved databases dnamethodstrends exonsgenetics expression gene genome govt humans information mice non-phs phs profilingmethodstrends protein research retrievalmethods sequence sequencegenetics software storage support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:10 as
	EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (Jun 2003) by T. S. Larsen, A. Krogh posted to non-us numerical 20031206 and bacillus bacterial bacterialgenetics binding biologymethodsstatistics chains coli coligenetics comparative computational data escherichia framesgenetics genes genetic genome govt helicobacter markov models mycobacterium predictive proteinschemistrygenetics pylorigenetics reading research ribosomeschemistrygenetics sensitivity sitesgenetics specificity statistical structural study subtilisgenetics support tests tuberculosisgenetics value 0500 of open by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:59 as
	Comparative ab initio prediction of gene structures using pair HMMs [My Copy] Bioinformatics, Vol. 18, No. 10. (Oct 2002), pp. 1309-1318. by I. M. Meyer, R. Durbin posted to databases software specificity alignmentmethods chains mice sequence 0500 algorithms comparative exonsgenetics expression genetic models regulation analysis animals markov proteomicsmethods research study 20030506 acid and dnamethods gene govt humans non-us nucleic of reproducibility results sensitivity support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:59 as
	GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [My Copy] Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618. by J. Besemer, A. Lomsadze, M. Borodovsky posted to 1001 20010728 algorithms alignment and archaeal archaealgenetics bacillus bacterial bacterialgenetics base biologymethods chains codon coligenetics computational computer databases escherichia evolution framesgenetics functions genes geneticgenetics genome initiatorgenetics internet likelihood markov molecular of open overlappinggenetics reading reproducibility results sensitivity sequence simulation software specificity subtilisgenetics transcription translation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as
	Using database matches with for HMMGene for automated gene detection in Drosophila [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 523-528. by A. Krogh posted to 0900 20000617 acid alcohol analysis and animals biologystatistics chains comparative computational computer-assisted data databases dehydrogenasegenetics drosophila factual genes govt homology insectgenetics markov melanogasterenzymologygenetics non-us nucleic numerical sensitivity sequence software specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:36 as
	Resolution of a supertree/supermatrix paradox. [My Copy] Syst Biol, Vol. 51, No. 4. (Aug 2002), pp. 652-64. by John Gatesy, Conrad Matthee, Rob Desalle, Cheryl Hayashi posted to 14530139 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 342-55. by John Gatesy, Richard H. Baker, Cheryl Hayashi posted to 15205059 alligators and animals classification comparative crocodiles data design interpretation meta-analysis phylogeny research statistical study bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Performance of flip supertree construction with a heuristic algorithm. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 299-308. by Oliver Eulenstein, Duhong Chen, Gordon J. Burleigh, David F. Baca, Michael J. Sanderson posted to 15205054 algorithms alligators and animals classification comparative computer crocodiles data design govt interpretation meta-analysis non-phs phylogeny research simulation statistical study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees. [My Copy] Syst Biol, Vol. 52, No. 6. (Dec 2003), pp. 839-48. by Olaf posted to 14668120 algorithms alignment alligators analysis and angiosperms animals array biodiversity calibration carnivora classification cluster comparative computer crocodiles data design dna evolution factors fossils genetic genetics govt graphics interface interpretation meta-analysis models molecular mutational non-phs non-us oligonucleotide pedigree phylogeny population re research search sequence simulation software statistical study support theoretical time us user-computer variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase

Note: You may cite this page as: http://www.citeulike.org/group/664/tag/and

Result page: 1 2 Next

Group: Bioinformatics - with tag and [61 articles] Export

Related Tags