Group: Bioinformatics - with tag animals [129 articles] Export

Recent papers posted by members of the Bioinformatics group with tag animals

	Genomic surgery for lung cancer. [My Copy] J Surg Res, Vol. 117, No. 1. (2004), pp. 107-13. by D. S. Schrump posted to genome-chromatin use therapygeneticstherapy regulation peptides neoplasticdrug neoplasmsdrug methylation lung humans histone genetic gene expression engineeringmethods effects dna disassemblydrug derivativespharmacologytherapeutic depsipeptides deacetylases cyclicpharmacologytherapeutic chromatin azacitidineanalogs assembly antineoplastic animals and agentspharmacologytherapeutic by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as along with 1 group ProkaryoteInterestGroup
	In vivo analysis of the model tyrosine aminotransferase gene reveals multiple sequential steps in glucocorticoid receptor action. [My Copy] Oncogene, Vol. 20, No. 24. (2001), pp. 3028-38. by T. Grange, L. Cappabianca, M. Flavin, H. Sassi, H. Thomassin posted to genome-chromatin tyrosine transaminasegeneticsmetabolism trans-activation support research receptors non-us models humans govt glucocorticoidphysiology genetics chromatingeneticsmetabolism biological animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as along with 1 group ProkaryoteInterestGroup
	[How the methyl-CpG binding protein-related epigenetic disease turns on the genes that produce its symptoms] [My Copy] Tanpakushitsu Kakusan Koso, Vol. 50, No. 8. (2005), pp. 978-84. by S. Horike posted to genome-chromatin transcription syndromegenetics rett repressor proteinsgenetics proteins protein non-histonegenetics mutation methyl-cpg-binding imprintinggenetics humans homeodomain histones genomic female factors dna-binding disassemblygenetics chromosomal chromatingenetics chromatin assembly animals and 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:47 as along with 1 group ProkaryoteInterestGroup
	Genomic DNA methylation: the mark and its mediators. [My Copy] Trends Biochem Sci, Vol. 31, No. 2. (2006), pp. 89-97. by R. J. Klose, A. P. Bird posted to genome-chromatin transcription syndromephysiopathology support silencingphysiology rett research regulation proteinsmetabolismphysiology protein non-us neoplasmsgenetics methylationdrug methyl-cpg-binding islandsphysiology intestinal humans govt geneticphysiology geneticdrug gene factorsphysiology expression epigenesis effectsphysiology effects dna-binding dna cytosine-5--methyltransferasemetabolism cpg animals 2genetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as along with 1 group ProkaryoteInterestGroup
	Cooperative interactions between epigenetic modifications and their function in the regulation of chromosome architecture. [My Copy] Bioessays, Vol. 25, No. 8. (2003), pp. 792-7. by F. Weissmann, F. Lyko posted to genome-chromatin support research non-us models methylation humans govt genetic epigenesis dna chromosomesgenetics animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as along with 1 group ProkaryoteInterestGroup
	Chromatin organization during spermiogenesis in Octopus vulgaris. I: Morphological structures. [My Copy] Mol Reprod Dev, Vol. 68, No. 2. (2004), pp. 223-31. by E. Ribes, Gimenez P. Bonafe, Martinez F. Soler, et al.A. Gonzalez, N. Saperas, H. E. Kasinsky, M. Chiva posted to genome-chromatin support spermatogenesisphysiology research octopodiformesphysiology nuclear non-us matrixmetabolism male govt disassemblyphysiology chromatinphysiology chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:45 as along with 1 group ProkaryoteInterestGroup
	The marks, mechanisms and memory of epigenetic states in mammals. [My Copy] Biochem J, Vol. 356, No. Pt 1. (2001), pp. 1-10. by V. K. Rakyan, J. Preis, H. D. Morgan, E. Whitelaw posted to methylation mammalsgenetics intercellular imprinting govt genomic genetic gene expression dosage dna compensation chromatinmetabolism animals and genome-chromatin support signaling research repressor regulation proteins peptides non-us models mice by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:44 as along with 1 group ProkaryoteInterestGroup
	Nucleosome assembly protein-1 is a linker histone chaperone in Xenopus eggs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 23. (2005), pp. 8210-5. by K. Shintomi, M. Iwabuchi, H. Saeki, K. Ura, T. Kishimoto, K. Ohsumi posted to govt female extracts disassembly data cycle chromatin chaperonesmetabolism cell assembly animals and amino acid genome-chromatin xenopusmetabolism support spermatozoametabolism sequence research proteinsgeneticsmetabolism proteins oocytesmetabolism nucleosomeschemistrymetabolism nuclear non-us molecular male histonesmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Silencing of transposable elements in plants. [My Copy] Trends Plant Sci, Vol. 6, No. 11. (2001), pp. 527-34. by H. Okamoto, H. Hirochika posted to genome-chromatin transposable transcription support silencing rna research regulation processing post-transcriptional plantsgenetics plant non-us mammalsgenetics govt genetic gene expression elementsgenetics elegansgeneticsmetabolism drosophilagenetics dna deletion caenorhabditis arabidopsisgeneticsmetabolism animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	The radioresistance kinase TLK1B protects the cells by promoting repair of double strand breaks. [My Copy] BMC Mol Biol, Vol. 6 (2005) by Sunavala G. Dossabhoy, S. K. Balakrishnan, S. Sen, S. Nuthalapaty, A. De Benedetti posted to genome-chromatin transfection tolerance support research repair radiation protein-serine-threonine plasmids phosphorylation non-us line kinasesgeneticsphysiology ionizing humans histonesmetabolism govt dna disassembly damage chromatin cell assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis. [My Copy] Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5. by F. Magdinier, S. G. D'Estaing, C. Peinado, et al.B. Demirci, C. Berthet, J. F. Guerin, R. Dante posted to genome-chromatin tumor suppressor support spermatozoametabolism research regulation protein p53genetics oocytesmetabolism non-us mice methylation male kinetics islandsgenetics humans govt genes gene fetal female expression embryonic dna developmentgenetics developmental cpg brca1 blastocystmetabolism animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes. [My Copy] Methods, Vol. 33, No. 1. (2004), pp. 81-5. by N. Fujita, P. A. Wade posted to genome-chromatin regions reagents promoter mappingmethods humans genomicsmethods genetics disassemblygeneticsphysiology cultured cross-linking chromosome chromatingeneticsphysiology chromatin cells assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as along with 1 group ProkaryoteInterestGroup
	[Transcriptome and non-coding RNAs: so many mRNA-like non-coding RNAs are really functional?] [My Copy] Tanpakushitsu Kakusan Koso, Vol. 49, No. 16. (2004), pp. 2521-8. by A. Kanai posted to genome-chromatin untranslatedclassificationgeneticsphysiology transcription sequence rna reading open messenger imprintinggenetics humans genomic geneticgenetics genetic frames dosage dna disassemblygenetics computational complementary compensation chromatin biology assembly antisense animals and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:36 as along with 1 group ProkaryoteInterestGroup
	Poly(ADP-ribosyl)ated chromatin domains: access granted. [My Copy] J Cell Sci, Vol. 117, No. Pt 6. (2004), pp. 815-25. by M. Rouleau, R. A. Aubin, G. G. Poirier posted to genome-chromatin transcription support ribosemetabolism research proteins polymerases polyadp-ribose poly nucleusmetabolism nucleic non-us non-histonemetabolism nadmetabolism humans histonesmetabolism govt genetic dnametabolism disassemblyphysiology diphosphate conformation chromosomesmetabolism chromosomal chromatinmetabolism chromatin cell assembly apoptosisphysiology animals and adenosine acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:35 as along with 1 group ProkaryoteInterestGroup
	Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins. [My Copy] J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35. by T. Ichimura, S. Watanabe, Y. Sakamoto, T. Aoto, N. Fujita, M. Nakao posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	DNA methylation in animal development. [My Copy] Semin Cell Dev Biol, Vol. 14, No. 1. (2003), pp. 53-65. by R. R. Meehan posted to genome-chromatin support research regulation proteinsphysiology non-us modification methylation methylasesgenetics imprinting govt genomic gene expression dna-binding dna developmentalgenetics chromatinmetabolismphysiology animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent chromatin-remodeling complexes in DNA double-strand break repair: remodeling, pairing and (re)pairing. [My Copy] Cell Cycle, Vol. 4, No. 12. (2005), pp. 1713-5. by J. Huang, B. Liang, J. Qiu, B. C. Laurent posted to genome-chromatin triphosphatemetabolism support research repair pairing nih multiprotein extramural dna disassembly damage complexesmetabolism chromosome chromatingeneticsmetabolism chromatin assembly animals and adenosinetriphosphatasemetabolism adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:30 as along with 1 group ProkaryoteInterestGroup
	Transition nuclear proteins are required for normal chromatin condensation and functional sperm development. [My Copy] Genesis, Vol. 38, No. 4. (2004), pp. 200-13. by M. Zhao, C. R. Shirley, S. Hayashi, et al.L. Marcon, B. Mohapatra, R. Suganuma, R. R. Behringer, G. Boissonneault, R. Yanagimachi, M. L. Meistrich posted to genome fluorescence disassembly developmentmetabolismpathology chromosomal chromatingeneticsmetabolism chromatin assembly animals and agingphysiology genome-chromatin us support spermatozoacytologygrowth spermatogenesis research proteins protaminesmetabolism phs non-us non-histonedeficiencygeneticsmetabolism mutationgenetics microscopy mice malegeneticspathology male knockout infertility histonesmetabolism govt by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:29 as along with 1 group ProkaryoteInterestGroup
	H2AX: tailoring histone H2A for chromatin-dependent genomic integrity. [My Copy] Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15. by A. Li, Eirin J. M. Lopez, J. Ausio posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as along with 1 group ProkaryoteInterestGroup
	Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila. [My Copy] Methods Mol Biol, Vol. 287 (2004), pp. 151-68. by M. D. Garfinkel, V. E. Sollars, X. Lu, D. M. Ruden posted to genome-chromatin us trait testsmethods techniques support selection research quantitative proteinsantagonists precipitin phs non-us molecular methylation male loci inhibitors hydroxamic hsp90 histonesanalysismetabolism heat-shock govt genetics genetic female epigenesis drosophilagenetics dna disassembly chromatin biologymethods assembly animals and acidspharmacology acetylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:26 as along with 1 group ProkaryoteInterestGroup
	FGF2-induced chromatin remodeling regulates CNTF-mediated gene expression and astrocyte differentiation. [My Copy] Nat Neurosci, Vol. 7, No. 3. (2004), pp. 229-35. by M. R. Song, A. Ghosh posted to genome-chromatin us transductiondrug transcription trans-activatorsdrug support stem stat1 signal research regulation regions rats proteinsdrug proteindrug promoter phs non-us neurotrophic methylationdrug lysinemetabolism histonesdrug growth govt glial geneticsdrug gene fibroblast fibrillary fetus factorsdrug factormetabolismpharmacology factor expression effectsmetabolism effectsgeneticsmetabolism effectsgenetics effects dna-binding disassemblydrug differentiationdrug developmentaldrug cultured cortexcytologyembryologymetabolism ciliary chromatin cerebral cellscytologydrug cells cell astrocytescytologydrug assembly animals and acidic 2metabolismpharmacology by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:24 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin. [My Copy] J Cell Biochem, Vol. 91, No. 6. (2004), pp. 1087-98. by S. Sif posted to non-us neoplasmsmetabolism humans govt geneticphysiology gene expression drosophila dnametabolism divisionphysiology disassemblyphysiology chromatin cerevisiae cell assembly animals and adenosine genome-chromatin us triphosphatemetabolism transcription support saccharomyces research regulation proteinsmetabolism phs nucleosomesmetabolism nuclear by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:23 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	The role of mammalian DNA methyltransferases in the regulation of gene expression. [My Copy] Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47. by Turek J. Plewa, P. P. Jagodzinski posted to genome-chromatin transcription support research regulation protein non-us isoforms humans govt genetic gene expression epigenesis dna disassembly cytosine-5--methyltransferasechemistrymetabolism chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	Chromatin remodeling and the maintenance of genome integrity. [My Copy] Biochim Biophys Acta, Vol. 1677, No. 1-3. (2004), pp. 158-64. by S. Allard, J. Y. Masson, J. Cote posted to genome-chromatin variation u1 triphosphatemetabolism support substances small rna-binding ribonucleoprotein research repairgenetics proteins nucleargeneticsmetabolism non-us macromolecular humans histonesgeneticsmetabolism histone govt genome genetics drosophila dna disassembly chromatin assembly animals and adenosine acetyltransferasesgeneticsmetabolism acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:12 as along with 1 group ProkaryoteInterestGroup
	Gene identification in novel eukaryotic genomes by self-training algorithm [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506. by A. Lomsadze, Ter V. Hovhannisyan, Y. O. Chernoff, M. Borodovsky posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	A non-EST-based method for exon-skipping prediction [My Copy] Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623. by R. Sorek, R. Shemesh, Y. Cohen, O. Basechess, G. Ast, R. Shamir posted to 0500 20040924 acid alternative animals biologymethods comparative computational databases exons expressed genetic genome human humans introns messengergenetics mice models nucleic rna sequence splicing study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Accurate identification of alternatively spliced exons using support vector machine [My Copy] Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 897-901. by G. Dror, R. Sorek, R. Shamir posted to 0900 20050713 algorithms alignmentmethods alternative analysis animals artificial automatedmethods chromosome comparative conserved dnamethods evolution exonsgenetics govt humans intelligence mappingmethods mice molecular non-us pattern recognition research sequence sequencegenetics software splicinggenetics study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes [My Copy] RNA, Vol. 10, No. 7. (Jul 2004), pp. 1005-1018. by H. Itoh, T. Washio, M. Tomita posted to 0500 20040824 acid alternative animals base complementarygenetics conserved data dna drosophila evolution exonsgenetics govt humans intronsgenetics melanogastergenetics mice molecular non-us nucleic oryza regulatory research sativagenetics sequence sequences species specificity splicinggenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	Genome-wide assembly and analysis of alternative transcripts in mouse [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754. by A. A. Sharov, D. B. Dudekula, M. S. Ko posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression [My Copy] Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41. by J. Reboul, P. Vaglio, J. F. Rual, et al.P. Lamesch, M. Martinez, C. M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, T. Moore, Hudson, J. L. Hartley, M. A. Brasch, J. Vandenhaute, S. Boulton, G. A. Endress, S. Jenna, E. Chevet, V. Papasotiropoulos, P. P. Tolias, J. Ptacek, M. Snyder, R. Huang, M. R. Chance, H. Lee, Doucette L. Stamm, D. E. Hill, M. Vidal posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Alternative splicing and genome complexity [My Copy] Nat Genet, Vol. 30, No. 1. (Jan 2002), pp. 29-30. by D. Brett, H. Pospisil, J. Valcarcel, J. Reich, P. Bork posted to 1001 20020205 alternative animals cattle expressed geneticsgenetics genome humans messengergenetics mice rats rna sequence splicing tags variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing of conserved exons is frequently species-specific in human and mouse [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77. by Q. Pan, M. A. Bakowski, Q. Morris, et al.W. Zhang, B. J. Frey, T. R. Hughes, B. J. Blencowe posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing, the gene concept, and evolution [My Copy] Hist Philos Life Sci, Vol. 26, No. 1. (2004) by S. M. Downes posted to 0900 20050511 alternative animals biology concept evolution formation genes genome human humans molecular philosophy splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	The transcriptional activity of human Chromosome 22 [My Copy] Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540. by J. L. Rinn, G. Euskirchen, P. Bertone, et al.R. Martone, N. M. Luscombe, S. Hartman, P. M. Harrison, F. K. Nelson, P. Miller, M. Gerstein, S. Weissman, M. Snyder posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as
	Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102. by J. M. Johnson, S. Edwards, D. Shoemaker, E. E. Schadt posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	Global identification of human transcribed sequences with genome tiling arrays [My Copy] Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246. by P. Bertone, V. Stolc, T. E. Royce, et al.J. S. Rozowsky, A. E. Urban, X. Zhu, J. L. Rinn, W. Tongprasit, M. Samanta, S. Weissman, M. Gerstein, M. Snyder posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as
	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs [My Copy] Nature, Vol. 420, No. 6915. (Dec 2002), pp. 563-573. by Y. Okazaki, M. Furuno, T. Kasukawa, et al.J. Adachi, H. Bono, S. Kondo, I. Nikaido, N. Osato, R. Saito, H. Suzuki, I. Yamanaka, H. Kiyosawa, K. Yagi, Y. Tomaru, Y. Hasegawa, A. Nogami, C. Schonbach, T. Gojobori, R. Baldarelli, D. P. Hill, C. Bult, D. A. Hume, J. Quackenbush, L. M. Schriml, A. Kanapin, H. Matsuda, S. Batalov, K. W. Beisel, J. A. Blake, D. Bradt, V. Brusic, C. Chothia, L. E. Corbani, S. Cousins, E. Dalla, T. A. Dragani, C. F. Fletcher, A. Forrest, K. S. Frazer, T. Gaasterland, M. Gariboldi, C. Gissi, A. Godzik, J. Gough, S. Grimmond, S. Gustincich, N. Hirokawa, I. J. Jackson, E. D. Jarvis, A. Kanai, H. Kawaji, Y. Kawasawa, R. M. Kedzierski, B. L. King, A. Konagaya, I. V. Kurochkin, Y. Lee, B. Lenhard, P. A. Lyons, D. R. Maglott, L. Maltais, L. Marchionni, L. Mckenzie, H. Miki, T. Nagashima, K. Numata, T. Okido, W. J. Pavan, G. Pertea, G. Pesole, N. Petrovsky, R. Pillai, J. U. Pontius, D. Qi, S. Ramachandran, T. Ravasi, J. C. Reed, D. J. Reed, J. Reid, B. Z. Ring, M. Ringwald, A. Sandelin, C. Schneider, C. A. Semple, M. Setou, K. Shimada, R. Sultana, Y. Takenaka, M. S. Taylor, R. D. Teasdale, M. Tomita, R. Verardo, L. Wagner, C. Wahlestedt, Y. Wang, Y. Watanabe, C. Wells, L. G. Wilming, Wynshaw A. Boris, M. Yanagisawa, I. Yang, L. Yang, Z. Yuan, M. Zavolan, Y. Zhu, A. Zimmer, P. Carninci, N. Hayatsu, Hirozane T. Kishikawa, H. Konno, M. Nakamura, N. Sakazume, K. Sato, T. Shiraki, K. Waki, J. Kawai, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, A. Miyazaki, K. Sakai, D. Sasaki, K. Shibata, A. Shinagawa, A. Yasunishi, M. Yoshino, R. Waterston, E. S. Lander, J. Rogers, E. Birney, Y. Hayashizaki posted to 0400 20021228 acid alternative amino animals antisensegenetics chromosome chromosomes cloning complementarygenetics databases dna expressed genesgenetics genetic geneticgenetics genomicsmethods govt humans initiation mammaliangenetics mapping membrane messengeranalysisgenetics micegenetics molecular motifs non-us physical protein proteinsgenetics proteomechemistrygenetics research rna sequence site splicinggenetics structure support tags tertiary transcription untranslatedanalysisgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:45 as
	Antisense transcription in the mammalian transcriptome [My Copy] Science, Vol. 309, No. 5740. (Sep 2005), pp. 1564-1566. by S. Katayama, Y. Tomaru, T. Kasukawa, et al.K. Waki, M. Nakanishi, M. Nakamura, H. Nishida, C. C. Yap, M. Suzuki, J. Kawai, H. Suzuki, P. Carninci, Y. Hayashizaki, C. Wells, M. Frith, T. Ravasi, K. C. Pang, J. Hallinan, J. Mattick, D. A. Hume, L. Lipovich, S. Batalov, P. G. Engstrom, Y. Mizuno, M. A. Faghihi, A. Sandelin, A. M. Chalk, Mottagui S. Tabar, Z. Liang, B. Lenhard, C. Wahlestedt posted to 0900 20050915 animals antisensebiosynthesis expression gene genetic genome govt humans interference messengerbiosynthesis micegenetics non-us regulation research rna support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:45 as
	Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data [My Copy] Genome Res, Vol. 12, No. 8. (Aug 2002), pp. 1286-1293. by H. Kochiwa, R. Suzuki, T. Washio, et al.R. Saito, H. Bono, P. Carninci, Y. Okazaki, R. Miki, Y. Hayashizaki, M. Tomita posted to 1001 20020907 alternative analysis analysisstatistics animals array cluster complementarygenetics data databases dna expression forecastingmethods gene geneticgenetics geneticstatistics govt library mice non-us numerical oligonucleotide profilingstatistics regulationgenetics research sequence splicinggenetics support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:44 as
	The transcriptional landscape of the mammalian genome [My Copy] Science, Vol. 309, No. 5740. (Sep 2005), pp. 1559-1563. by P. Carninci, T. Kasukawa, S. Katayama, et al.J. Gough, M. C. Frith, N. Maeda, R. Oyama, T. Ravasi, B. Lenhard, C. Wells, R. Kodzius, K. Shimokawa, V. B. Bajic, S. E. Brenner, S. Batalov, A. R. Forrest, M. Zavolan, M. J. Davis, L. G. Wilming, V. Aidinis, J. E. Allen, Ambesi A. Impiombato, R. Apweiler, R. N. Aturaliya, T. L. Bailey, M. Bansal, L. Baxter, K. W. Beisel, T. Bersano, H. Bono, A. M. Chalk, K. P. Chiu, V. Choudhary, A. Christoffels, D. R. Clutterbuck, M. L. Crowe, E. Dalla, B. P. Dalrymple, B. de Bono, G. Della Gatta, D. di Bernardo, T. Down, P. Engstrom, M. Fagiolini, G. Faulkner, C. F. Fletcher, T. Fukushima, M. Furuno, S. Futaki, M. Gariboldi, Georgii P. Hemming, T. R. Gingeras, T. Gojobori, R. E. Green, S. Gustincich, M. Harbers, Y. Hayashi, T. K. Hensch, N. Hirokawa, D. Hill, L. Huminiecki, M. Iacono, K. Ikeo, A. Iwama, T. Ishikawa, M. Jakt, A. Kanapin, M. Katoh, Y. Kawasawa, J. Kelso, H. Kitamura, H. Kitano, G. Kollias, S. P. Krishnan, A. Kruger, S. K. Kummerfeld, I. V. Kurochkin, L. F. Lareau, D. Lazarevic, L. Lipovich, J. Liu, S. Liuni, S. Mcwilliam, Madan M. Babu, M. Madera, L. Marchionni, H. Matsuda, S. Matsuzawa, H. Miki, F. Mignone, S. Miyake, K. Morris, Mottagui S. Tabar, N. Mulder, N. Nakano, H. Nakauchi, P. Ng, R. Nilsson, S. Nishiguchi, S. Nishikawa, F. Nori, O. Ohara, Y. Okazaki, V. Orlando, K. C. Pang, W. J. Pavan, G. Pavesi, G. Pesole, N. Petrovsky, S. Piazza, J. Reed, J. F. Reid, B. Z. Ring, M. Ringwald, B. Rost, Y. Ruan, S. L. Salzberg, A. Sandelin, C. Schneider, C. Schonbach, K. Sekiguchi, C. A. Semple, S. Seno, L. Sessa, Y. Sheng, Y. Shibata, H. Shimada, K. Shimada, D. Silva, B. Sinclair, S. Sperling, E. Stupka, K. Sugiura, R. Sultana, Y. Takenaka, K. Taki, K. Tammoja, S. L. Tan, S. Tang, M. S. Taylor, J. Tegner, S. A. Teichmann, H. R. Ueda, E. van Nimwegen, R. Verardo, C. L. Wei, K. Yagi, H. Yamanishi, E. Zabarovsky, S. Zhu, A. Zimmer, W. Hide, C. Bult, S. M. Grimmond, R. D. Teasdale, E. T. Liu, V. Brusic, J. Quackenbush, C. Wahlestedt, J. S. Mattick, D. A. Hume, C. Kai, D. Sasaki, Y. Tomaru, S. Fukuda, Kanamori M. Katayama, M. Suzuki, J. Aoki, T. Arakawa, J. Iida, K. Imamura, M. Itoh, T. Kato, H. Kawaji, N. Kawagashira, T. Kawashima, M. Kojima, S. Kondo, H. Konno, K. Nakano, N. Ninomiya, T. Nishio, M. Okada, C. Plessy, K. Shibata, T. Shiraki, S. Suzuki, M. Tagami, K. Waki, A. Watahiki, Okamura Y. Oho, H. Suzuki, J. Kawai, Y. Hayashizaki posted to 0900 20050915 3 acid animals base complementarychemistry conserved dna genetic genetics genome genomics govt human humans initiation micegenetics non-us promoter proteinsgenetics regions regulatory research ribonucleic rna rnachemistryclassification sequence sequences site splicing support terminator transcription untranslated untranslatedchemistry by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:43 as
	Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication [My Copy] Nature, Vol. 437, No. 7055. (Sep 2005), pp. 94-100. by E. V. Linardopoulou, E. M. Williams, Y. Fan, C. Friedman, J. M. Young, B. J. Trask posted to 0900 20050913 acid animals base biology breakagegenetics chromosome chromosomes computational dna duplication extramural factors gene genetic geneticgenetics genome genomics govt homology human humangenetics humans models nih nucleic phs polymorphism primatesgenetics recombination repair research sequence support telomeregenetics time translocation us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:41 as
	Applications of DNA tiling arrays for whole-genome analysis [My Copy] Genomics, Vol. 85, No. 1. (Jan 2005), pp. 1-15. by T. C. Mockler, S. Chan, A. Sundaresan, H. Chen, S. E. Jacobsen, J. R. Ecker posted to 0900 20050623 analysismethodstrends animals array chromatin dna expression extramural gene geneticgenetics genome genotype govt humans immunoprecipitationmethodstrends methylation nih non-phs oligonucleotide phs polymorphism profilingmethodstrends research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:40 as
	The microRNA Registry [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (Jan 2004), pp. D109-D111. by Griffiths S. Jones posted to 0500 20040121 acid animals base biology computational conformation databases humans internet micrornaschemistrygenetics nucleic registries sequence by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as
	The UCSC Genome Browser Database [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (Jan 2003), pp. 51-54. by D. Karolchik, R. Baertsch, M. Diekhans, et al.T. S. Furey, A. Hinrichs, Y. T. Lu, K. M. Roskin, M. Schwartz, C. W. Sugnet, D. J. Thomas, R. J. Weber, D. Haussler, W. J. Kent posted to 0400 20030315 and animals california database databases genetic genome genomics govt human humans information management mice non-us phs research retrieval storage support systems us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	Ensembl 2005 [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (Jan 2005), pp. D447-D453. by T. Hubbard, D. Andrews, M. Caccamo, et al.G. Cameron, Y. Chen, M. Clamp, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, Fernandez X. M. Suarez, J. Gilbert, M. Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, F. Kokocinsci, D. London, I. Longden, G. Mcvicker, C. Melsopp, P. Meidl, S. Potter, G. Proctor, M. Rae, D. Rios, M. Schuster, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, S. Trevanion, Ureta A. Vidal, J. Vogel, S. White, C. Woodwark, E. Birney posted to 0900 20050416 acid alignment animals base cattle databases dogs genomics govt humans interface internet mice non-us nucleic phs rats research sequence software support us user-computer by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	RefSeq and LocusLink: NCBI gene-centered resources [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (Jan 2001), pp. 137-140. by K. D. Pruitt, D. R. Maglott posted to 1001 20010303 alignment animals biotechnology chromosome databases factual genes health humans information institutes internet library mapping medicine messengergenetics national of proteinsgenetics rna sequence services states structuralgenetics united us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:33 as
	Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila [My Copy] Genome Res, Vol. 14, No. 2. (Feb 2004), pp. 273-279. by D. L. Halligan, Eyre A. Walker, P. Andolfatto, P. D. Keightley posted to 0500 20040318 alignmentmethodsstatistics animals carlo comparative conserved data dna drosophila drosophilagenetics evolution frequencygenetics gene intergenicgenetics intronsgenetics melanogastergenetics method models molecular monte numerical sequence sequencegenetics statistical study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:30 as

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mammals	36
humans	34
evolution	31
primates	26
sequence	26
genome	25
dna	22
mirna	21
rates	21
human	19
hominidae	18
comparative	17
genetics	16
biology	15
databases	15
substitution-models	15
clock-like	14
mice	13
review	13
sequence-evolution	13
divergence	12
protein	12
analysis	11
expression	11
gene	11
data-mining	10
genetic	10
mitochondrial	10
proteins	10
unread	10
adaptation	9
algorithms	9
collective-behavior	9
genes	9
rats	9
self-organization	9
vertebrates	9
experiments	8
microrna	8
micrornas	8
model	8
patterns	8
phylogenomics	8
phylogeny	8
printed	8
rodents	8
selection	8
unprinted	8
fish	7
forseidl	7
homology	7
interaction	7
plants	7
target	7
acid	6
alignment	6
ants	6
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cells	6
chimpanzee	6
information	6
interface	6
models	6
molecular	6
nuclear	6
software	6
species	6
user-computer	6
altruism	5
array	5
behavior	5
cattle	5
computational	5
culture	5
experiment	5
factor	5
female	5
genomics	5
internet	5
metabolism	5
monkeys	5
motion	5
oligonucleotide	5
prediction	5
retrieval	5
storage	5
terminology	5
value	5
base	4
cloning	4
coordination	4
eukaryotic	4
methods	4
neuroscience	4
plant	4
precursor	4
profiling	4
regulation	4
systems	4
transcription	4

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