Group: Bioinformatics - with tag data [104 articles] Export

Recent papers posted by members of the Bioinformatics group with tag data

	An XML transfer schema for exchange of genomic and genetic mapping data: implementation as a web service in a Taverna workflow [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (14 August 2009), 252. by Trevor Paterson, Andy Law posted to xml workflow web transfer taverna service schema mapping implementation genomic genetic exchange data by dswan to the group Bioinformatics on 2009-09-14 11:53:02 as along with 7 people pekrau FemkeDeBackere guhjy cisevol dullhunk reyez druvus
	Extracting biologically significant patterns from short time series gene expression data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (20 August 2009), 255. by Alain Tchagang, Kevin Bui, Thomas McGinnis, Panayiotis Benos posted to time significant short series patterns gene extracting expression data biologically by dswan to the group Bioinformatics on 2009-09-14 11:52:17 as along with 1 person sotacam
	GEM-TREND: a web tool for gene expression data mining toward relevant network discovery. [My Copy] BMC genomics, Vol. 10, No. 1. (3 September 2009), 411. by Chunlai Feng, Michihiro Araki, Ryo Kunimoto, et al.Akiko Tamon, Hiroki Makiguchi, Satoshi Niijima, Gozoh Tsujimoto, Yasushi Okuno posted to web tool relevant network mining gene expression discovery data by dswan to the group Bioinformatics on 2009-09-14 11:08:04 as along with 5 people daforerog pengchy ptrobajo sotacam barriot
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to solexa sequencing primary platfrom illumina data application analysis by dswan to the group Bioinformatics on 2009-08-20 10:39:18 as along with 21 people and 3 groups heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj torfinnnome rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares n00c aprasad niallhaslam idoerg BergmanLab SIMR bioinformatics Journal picks
	Comments on the analysis of unbalanced microarray data [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2035-2041. by Kathleen F. Kerr posted to analysis comment data microarray unbalanced by dswan to the group Bioinformatics on 2009-08-10 12:27:20 as along with 5 people rdiaz Zephyrus reyez lwaldron guhjy
	A-MADMAN: annotation-based microarray data meta-analysis tool. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 June 2009), 201. by Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, et al.Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi posted to analysis annotation application based data meta microarray tool by dswan to the group Bioinformatics on 2009-07-10 10:56:09 as along with 6 people daforerog ptrobajo bertelsen guhjy shikin neils
	NTAP: for NimbleGen tiling array ChIP-chip data analysis [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1838-1840. by Kun He, Xueyong Li, Junli Zhou, Xing-Wang Deng, Hongyu Zhao, Jingchu Luo posted to analysis application array chip chip-on-chip data nimblegen tiling by dswan to the group Bioinformatics on 2009-07-06 11:38:23 as along with 3 people ashishanand idonaldson rschulz
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to analysis data editorial generation managing next sequence by dswan to the group Bioinformatics on 2009-06-29 13:21:08 as along with 41 people and 2 groups Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton reyez kshameer TRHvidsten djkt ppgardne BergmanLab Journal picks
	A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 13. (1 July 2009), pp. 1694-1701. by Jonathan D. Wren posted to analysis data divide estimate expression functions gene global literature meta microarray predict unknown by dswan to the group Bioinformatics on 2009-06-18 11:14:32 as along with 10 people and 1 group jfr jperkins fenghezi guhjy renatomilani VGreiff mitko TRHvidsten daforerog shikin Orengo Group Journal Picks
	GAGE: generally applicable gene set enrichment for pathway analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 161. by Weijun Luo, Michael Friedman, Kerby Shedden, Kurt Hankenson, Peter Woolf posted to analysis data enrichment gage gene gsea microarray pathway set by dswan to the group Bioinformatics on 2009-06-09 11:30:42 as along with 12 people and 1 group dipenps sotacam GustavoLacerda guhjy ptrobajo VGreiff thegoose vinithepooh kshameer renatomilani cassj stajich Mycology
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to analysis cross cross-species data expression microarray species by dswan to the group Bioinformatics on 2009-05-29 09:04:40 as along with 12 people jfr roys daveGerrard ptrobajo guhjy yaredo shikin renatomilani rdiaz thomaskelder natstreet druvus
	Clustered alignments of gene-expression time series data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i119-1127. by Adam A. Smith, Aaron Vollrath, Christopher A. Bradfield, Mark Craven posted to alignments clustered data expression gene series time by dswan to the group Bioinformatics on 2009-05-29 09:01:25 as along with 1 person rdiaz
	Gene Aging Nexus: a web database and data mining platform for microarray data on aging [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D756-D759. by Pan, Fei, Chiu, et al. Chi-Hsien, Pulapura, Sudip, Mehan, R. Michael, Nunez-Iglesias, Juan, Zhang, Kangyu, Kamath, Kiran, Waterman, S. Michael, Finch, E. Caleb, Zhou, Xianghong Jasmine posted to aging data database gene microaray mining nexus platform web by dswan to the group Bioinformatics on 2009-05-13 11:40:58 as
	JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes [My Copy] BMC Bioinformatics, Vol. 9 (01 April 2008), 177. by Michael Richter, Thierry Lombardot, Ivaylo Kostadinov, et al.Renzo Kottmann, Melissa B. Duhaime, Jorg Peplies, Frank O. Glockner posted to bioinformatics data metagenomes software by Thaverkamp to the group Bioinformatics on 2009-05-12 10:40:03 as along with 4 people treangen druvus wisdom_love beatrizfernandez
	The Gaggle: an open-source software system for integrating bioinformatics software and data sources. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. T. Shannon, D. J. Reiss, R. Bonneau, N. S. Baliga posted to bioinformatics data by Thaverkamp to the group Bioinformatics on 2009-05-06 07:50:42 as along with 13 people and 2 groups Zephyrus druvus seemu daforerog guhjy julius dullhunk frohike jmuhlich cerami pablomendes waszak megraw SysbioMPI-TCells SorgerLab
	Techniques for integrating -omics data. [My Copy] Bioinformation, Vol. 3, No. 6. (2009), pp. 284-286. by S. P. Akula, R. N. Miriyala, H. Thota, A. A. Rao, S. Gedela posted to data integrating omics techniques by dswan to the group Bioinformatics on 2009-03-04 18:02:43 as along with 1 person fgibson
	SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 4. (15 February 2009), pp. 541-542. by Daniel M. Gatti, Myroslav Sypa, Ivan Rusyn, Fred A. Wright, William T. Barry posted to application categorical data expression gene pathway resampling significance testing by dswan to the group Bioinformatics on 2009-02-16 11:12:04 as along with 3 people jfr tmmurali guhjy
	Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes. [My Copy] BMC genomics, Vol. 10 (05 February 2009), 63. by Steven P. Wilder, Pamela J. Kaisaki, Karène Argoud, et al.Anita Salhan, Jiannis Ragoussis, Marie-Thérèse T. Bihoreau, Dominique Gauguier posted to analysis comparative data diabetes gene methodology microarray model mouse profiling rat technologies transcription by dswan to the group Bioinformatics on 2009-02-09 10:28:26 as along with 2 people guhjy shikin
	PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Victoria Martin-Requena, Antonio Muñoz-Merida, M. Gonzalo Claros, Oswaldo Trelles posted to analyse application data microarray pre-process prep07 tool by dswan to the group Bioinformatics on 2009-02-09 10:24:46 as along with 3 people daforerog guhjy rdiaz
	EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (06 February 2009), 50. by Michael Dondrup, Stefan P. Albaum, Thasso Griebel, et al.Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane K. Kleindt, Helge Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann posted to analysis application collaborative compliant data emma integration mage microarray system by dswan to the group Bioinformatics on 2009-02-09 10:23:41 as along with 4 people bertelsen barriot guhjy cassj
	Selecting control genes for RT-QPCR using public microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 42. by Vlad Popovici, Darlene R. Goldstein, Janine Antonov, Rolf Jaggi, Mauro Delorenzi, Pratyaksha Wirapati posted to control data genes microarray public qpcr selecting by dswan to the group Bioinformatics on 2009-02-09 10:16:15 as along with 7 people daforerog lwaldron jfr Zephyrus guhjy natstreet druvus
	NMPP: a user-customized NimbleGen microarray data processing pipeline [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2955-2957. by Wang, Xiangfeng, He, et al. Hang, Chen, Runsheng, Deng, Xing Wang, Li, Songgang posted to data microarray nimblegen nmpp pipeline processing by dswan to the group Bioinformatics on 2009-01-26 16:04:43 as along with 1 person GeeSharpMinor
	AmiGO: online access to ontology and annotation data. [My Copy] Bioinformatics (Oxford, England) (25 November 2008) by Seth Carbon, Amelia Ireland, Christopher J J. Mungall, et al.Shengqiang Shu, Brad Marshall, Suzanna Lewis, , posted to access amigo annotation data online ontology by dswan to the group Bioinformatics on 2009-01-15 16:13:54 as along with 13 people and 1 group fgibson ilyashl sobolevnrm jfr jm12 allysonlister mitko ykadi natstreet ientb druvus guhjy dullhunk baker-group
	MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 279-280. by T. F. Rayner, F. I. Rezwan, M. Lukk, et al.X. Z. Bradley, A. Farne, E. Holloway, J. Malone, E. Williams, H. Parkinson posted to data format mage mage-ml mage-tab microarray suite support tool by dswan to the group Bioinformatics on 2009-01-15 16:13:01 as along with 3 people guhjy jfr pkonings
	LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data [My Copy] Bioinformatics (27 November 2008), btn592. by Maureen A. Sartor, George D. Leikauf, Mario Medvedovic posted to application biological data enriched expression gene groups identifying regression by dswan to the group Bioinformatics on 2009-01-15 16:12:09 as along with 8 people and 1 group zufar rdiaz jfr guhjy heliopais VGreiff Zephyrus renatomilani Roswell Cancer Crosstalk
	Filtering for increased power for microarray data analysis. [My Copy] BMC bioinformatics, Vol. 10 (08 January 2009), 11. by A. J. Hackstadt, A. M. Hess posted to analysis data filtering increased microarray power by dswan to the group Bioinformatics on 2009-01-15 12:13:07 as along with 6 people Zephyrus jfr greg rdiaz guhjy nuin
	Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data. [My Copy] Journal of bioinformatics and computational biology, Vol. 3, No. 5. (October 2005), pp. 1171-1189. by R. Breitling, P. Herzyk posted to alternative analysis biological data microarray non-parametric products rank t-statistic by dswan to the group Bioinformatics on 2009-01-14 10:11:35 as
	MicroRNA expression profiles classify human cancers [My Copy] Nature, Vol. 435, No. 7043. (09 June 2005), pp. 834-838. by Jun Lu, Gad Getz, Eric A. Miska, et al.Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L. Ebert, Raymond H. Mak, Adolfo A. Ferrando, James R. Downing, Tyler Jacks, H. Robert Horvitz, Todd R. Golub posted to cancer data expression microrna by frohike to the group Bioinformatics on 2008-03-26 09:50:38 as along with 15 people and 1 group songpku tibbitts abhattac cswinburne jfr tmmurali ajeffs tuck mtagaya ealloza capitall maralena giovenko srp33 zhouyu microRNA
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to data microarray proteomics review by frohike to the group Bioinformatics on 2008-03-21 14:47:37 as along with 17 people Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang bertelsen ptrobajo jfr guhjy tmmurali dwf cjeans nedwards shikin blackm0k brianb
	Nucleosome assembly protein-1 is a linker histone chaperone in Xenopus eggs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 23. (2005), pp. 8210-5. by K. Shintomi, M. Iwabuchi, H. Saeki, K. Ura, T. Kishimoto, K. Ohsumi posted to govt female extracts disassembly data cycle chromatin chaperonesmetabolism cell assembly animals and amino acid genome-chromatin xenopusmetabolism support spermatozoametabolism sequence research proteinsgeneticsmetabolism proteins oocytesmetabolism nucleosomeschemistrymetabolism nuclear non-us molecular male histonesmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Solution structure of the SWIRM domain of human histone demethylase LSD1. [My Copy] Structure, Vol. 14, No. 3. (2006), pp. 457-68. by N. Tochio, T. Umehara, S. Koshiba, et al.M. Inoue, T. Yabuki, M. Aoki, E. Seki, S. Watanabe, Y. Tomo, M. Hanada, M. Ikari, M. Sato, T. Terada, T. Nagase, O. Ohara, M. Shirouzu, A. Tanaka, T. Kigawa, S. Yokoyama posted to specificity sequence research proteins protein oxidoreductases non-us n-demethylatingchemistrygenetics motifs molecular models histonesanalysismetabolism helix-turn-helix govt factorsanalysischemistry factors dna-binding disassembly data conformation chromatin assembly and amino acid genome-chromatin transcription time tertiary support substrate structure by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as along with 1 group ProkaryoteInterestGroup
	A heterochromatin barrier partitions the fission yeast centromere into discrete chromatin domains. [My Copy] Curr Biol, Vol. 16, No. 2. (2006), pp. 119-29. by K. C. Scott, S. L. Merrett, H. F. Willard posted to genome-chromatin transfer support site-directed silencing sequence segregationgeneticsphysiology schizosaccharomycescytologygeneticsgrowth rna research regulation non-us mutagenesis molecular meiosisphysiology heterochromatinchemistrygeneticsphysiology govt gene fungal expression disassembly development deletion data chromosome chromatin centromerechemistrygenetics base assembly and alagenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:40 as along with 1 group ProkaryoteInterestGroup
	Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins. [My Copy] J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35. by T. Ichimura, S. Watanabe, Y. Sakamoto, T. Aoto, N. Fujita, M. Nakao posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	H2AX: tailoring histone H2A for chromatin-dependent genomic integrity. [My Copy] Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15. by A. Li, Eirin J. M. Lopez, J. Ausio posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays [My Copy] Science, Vol. 302, No. 5653. (Dec 2003), pp. 2141-2144. by J. M. Johnson, J. Castle, Garrett P. Engele, et al.Z. Kan, P. M. Loerch, C. D. Armour, R. Santos, E. E. Schadt, R. Stoughton, D. D. Shoemaker posted to 0500 20040107 alternative amyloid analysis array beta-protein cell chain coa complementary curve data distribution dna exons expressed genome human humans hydrolases hydroxymethylglutaryl isoformsanalysis line molecular monoester oligonucleotide phosphoric polymerase precursoranalysisgenetics precursorsgenetics protein proteinsanalysisgenetics reaction reductasesanalysisgenetics reverse rna roc sequence splicing tags tissue transcriptase by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes [My Copy] RNA, Vol. 10, No. 7. (Jul 2004), pp. 1005-1018. by H. Itoh, T. Washio, M. Tomita posted to 0500 20040824 acid alternative animals base complementarygenetics conserved data dna drosophila evolution exonsgenetics govt humans intronsgenetics melanogastergenetics mice molecular non-us nucleic oryza regulatory research sativagenetics sequence sequences species specificity splicinggenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	Genome-wide assembly and analysis of alternative transcripts in mouse [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754. by A. A. Sharov, D. B. Dudekula, M. S. Ko posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Frequent alternative splicing of human genes [My Copy] Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293. by A. A. Mironov, J. W. Fickett, M. S. Gelfand posted to 0001 19991230 5 alignment alternative base contig data databases exonsgenetics expressed factual govt humans intronsgenetics isoformsgenetics mappingmethods molecular non-phs non-us protein regionsgenetics research sequence sequencegenetics splicing support tags untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Stochastic models inspired by hybridization theory for short oligonucleotide arrays [My Copy] J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893. by Z. Wu, R. A. Irizarry posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	The transcriptional activity of human Chromosome 22 [My Copy] Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540. by J. L. Rinn, G. Euskirchen, P. Bertone, et al.R. Martone, N. M. Luscombe, S. Hartman, P. M. Harrison, F. K. Nelson, P. Miller, M. Gerstein, S. Weissman, M. Snyder posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as
	Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 [My Copy] Genome Res, Vol. 14, No. 3. (Mar 2004), pp. 331-342. by D. Kampa, J. Cheng, P. Kapranov, et al.M. Yamanaka, S. Brubaker, S. Cawley, J. Drenkow, A. Piccolboni, S. Bekiranov, G. Helt, H. Tammana, T. R. Gingeras posted to 0500 20040318 21genetics 22genetics analysismethods array cell cellschemistrymetabolism chromosome chromosomes data dna expression gene genes geneticgenetics govt human humans jurkat line mappingmethods messengergenetics molecular neoplasmgenetics non-us oligonucleotide pair phs probesgenetics profilingmethods research rna rnagenetics sequence structural structuralgenetics support transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:48 as
	Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data [My Copy] Genome Res, Vol. 12, No. 8. (Aug 2002), pp. 1286-1293. by H. Kochiwa, R. Suzuki, T. Washio, et al.R. Saito, H. Bono, P. Carninci, Y. Okazaki, R. Miki, Y. Hayashizaki, M. Tomita posted to 1001 20020907 alternative analysis analysisstatistics animals array cluster complementarygenetics data databases dna expression forecastingmethods gene geneticgenetics geneticstatistics govt library mice non-us numerical oligonucleotide profilingstatistics regulationgenetics research sequence splicinggenetics support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:44 as
	Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping [My Copy] Trends Genet, Vol. 21, No. 8. (Aug 2005), pp. 466-475. by T. E. Royce, J. S. Rozowsky, P. Bertone, et al.M. Samanta, V. Stolc, S. Weissman, M. Snyder, M. Gerstein posted to 0900 20050915 algorithms analysismethodsstatistics array base biology comparative computational data dnagenetics extramural genetic govt humans molecular nih numerical oligonucleotide phs probes research sequence study support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as
	Sequence logos: a new way to display consensus sequences [My Copy] Nucleic Acids Res, Vol. 18, No. 20. (Oct 1990), pp. 6097-6100. by T. D. Schneider, R. M. Stephens posted to 0001 19901025 acid amino bacteriophage base binding chromosome coligenetics data deletion dna dna-directed elements escherichia genes genetic globinsgenetics govt humans lambdagenetics molecular non-us phs polymerasesmetabolism research rna sequence sites support t-phagesenzymologygenetics techniques transposable us viral by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:35 as
	EST\_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA [My Copy] Comput Appl Biosci, Vol. 13, No. 4. (Aug 1997), pp. 477-478. by R. Mott posted to 0001 16genetics 19970801 acid algorithms alignmentmethodsstatistics base chromosomes complementarygenetics data dna evaluation expression gene genome govt homology human humans molecular non-us nucleic numerical pair recombinant research sequence software studies support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:34 as

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