Group: Bioinformatics - with tag databases [60 articles] Export

Recent papers posted by members of the Bioinformatics group with tag databases

	Towards a collaborative, global infrastructure for biodiversity assessment [My Copy] Ecology Letters, Vol. 10, No. 8. (August 2007), pp. 663-672. by Guralnick, P. Robert, Hill, W. Andrew, Lane, Meredith posted to specimen gbif databases biology biodiversityinformatics by kehan to the group Bioinformatics on 2007-08-06 10:31:29 as along with 2 people and 2 groups Flit iwagner biodiversity_conservation GrassBase
	A non-EST-based method for exon-skipping prediction [My Copy] Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623. by R. Sorek, R. Shemesh, Y. Cohen, O. Basechess, G. Ast, R. Shamir posted to 0500 20040924 acid alternative animals biologymethods comparative computational databases exons expressed genetic genome human humans introns messengergenetics mice models nucleic rna sequence splicing study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Integrative annotation of 21,037 human genes validated by full-length cDNA clones [My Copy] PLoS Biol, Vol. 2, No. 6. (Jun 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Yamaguchi Y. Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, Thierry J. Mieg, Thierry D. Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, Bonaldo F. Mde, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, Fukami K. Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, Mariage R. Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, Piatier D. Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as
	Genome-wide assembly and analysis of alternative transcripts in mouse [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754. by A. A. Sharov, D. B. Dudekula, M. S. Ko posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression [My Copy] Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41. by J. Reboul, P. Vaglio, J. F. Rual, et al.P. Lamesch, M. Martinez, C. M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, T. Moore, Hudson, J. L. Hartley, M. A. Brasch, J. Vandenhaute, S. Boulton, G. A. Endress, S. Jenna, E. Chevet, V. Papasotiropoulos, P. P. Tolias, J. Ptacek, M. Snyder, R. Huang, M. R. Chance, H. Lee, Doucette L. Stamm, D. E. Hill, M. Vidal posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome [My Copy] Nat Genet, Vol. 24, No. 4. (Apr 2000), pp. 340-341. by L. Croft, S. Schandorff, F. Clark, K. Burrage, P. Arctander, J. S. Mattick posted to 0900 20000508 alternative biology computational databases exonsgenetics expressed factualtrends frequency gene genome human humans intronsgenetics isoformsgenetics messengergenetics protein rna sequence splicinggenetics tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	In silico screening for tumour-specific expressed sequences in human genome [My Copy] FEBS Lett, Vol. 508, No. 1. (Nov 2001), pp. 143-148. by A. V. Baranova, A. V. Lobashev, D. V. Ivanov, L. L. Krukovskaya, N. K. Yankovsky, A. P. Kozlov posted to 1001 20020105 databases expressed expression gene genes genetic genome human humans library neoplasm neoplasmsgenetics profilingmethods sequence structural tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Frequent alternative splicing of human genes [My Copy] Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293. by A. A. Mironov, J. W. Fickett, M. S. Gelfand posted to 0001 19991230 5 alignment alternative base contig data databases exonsgenetics expressed factual govt humans intronsgenetics isoformsgenetics mappingmethods molecular non-phs non-us protein regionsgenetics research sequence sequencegenetics splicing support tags untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	The transcriptional activity of human Chromosome 22 [My Copy] Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540. by J. L. Rinn, G. Euskirchen, P. Bertone, et al.R. Martone, N. M. Luscombe, S. Hartman, P. M. Harrison, F. K. Nelson, P. Miller, M. Gerstein, S. Weissman, M. Snyder posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as
	Global identification of human transcribed sequences with genome tiling arrays [My Copy] Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246. by P. Bertone, V. Stolc, T. E. Royce, et al.J. S. Rozowsky, A. E. Urban, X. Zhu, J. L. Rinn, W. Tongprasit, M. Samanta, S. Weissman, M. Gerstein, M. Snyder posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as
	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs [My Copy] Nature, Vol. 420, No. 6915. (Dec 2002), pp. 563-573. by Y. Okazaki, M. Furuno, T. Kasukawa, et al.J. Adachi, H. Bono, S. Kondo, I. Nikaido, N. Osato, R. Saito, H. Suzuki, I. Yamanaka, H. Kiyosawa, K. Yagi, Y. Tomaru, Y. Hasegawa, A. Nogami, C. Schonbach, T. Gojobori, R. Baldarelli, D. P. Hill, C. Bult, D. A. Hume, J. Quackenbush, L. M. Schriml, A. Kanapin, H. Matsuda, S. Batalov, K. W. Beisel, J. A. Blake, D. Bradt, V. Brusic, C. Chothia, L. E. Corbani, S. Cousins, E. Dalla, T. A. Dragani, C. F. Fletcher, A. Forrest, K. S. Frazer, T. Gaasterland, M. Gariboldi, C. Gissi, A. Godzik, J. Gough, S. Grimmond, S. Gustincich, N. Hirokawa, I. J. Jackson, E. D. Jarvis, A. Kanai, H. Kawaji, Y. Kawasawa, R. M. Kedzierski, B. L. King, A. Konagaya, I. V. Kurochkin, Y. Lee, B. Lenhard, P. A. Lyons, D. R. Maglott, L. Maltais, L. Marchionni, L. Mckenzie, H. Miki, T. Nagashima, K. Numata, T. Okido, W. J. Pavan, G. Pertea, G. Pesole, N. Petrovsky, R. Pillai, J. U. Pontius, D. Qi, S. Ramachandran, T. Ravasi, J. C. Reed, D. J. Reed, J. Reid, B. Z. Ring, M. Ringwald, A. Sandelin, C. Schneider, C. A. Semple, M. Setou, K. Shimada, R. Sultana, Y. Takenaka, M. S. Taylor, R. D. Teasdale, M. Tomita, R. Verardo, L. Wagner, C. Wahlestedt, Y. Wang, Y. Watanabe, C. Wells, L. G. Wilming, Wynshaw A. Boris, M. Yanagisawa, I. Yang, L. Yang, Z. Yuan, M. Zavolan, Y. Zhu, A. Zimmer, P. Carninci, N. Hayatsu, Hirozane T. Kishikawa, H. Konno, M. Nakamura, N. Sakazume, K. Sato, T. Shiraki, K. Waki, J. Kawai, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, A. Miyazaki, K. Sakai, D. Sasaki, K. Shibata, A. Shinagawa, A. Yasunishi, M. Yoshino, R. Waterston, E. S. Lander, J. Rogers, E. Birney, Y. Hayashizaki posted to 0400 20021228 acid alternative amino animals antisensegenetics chromosome chromosomes cloning complementarygenetics databases dna expressed genesgenetics genetic geneticgenetics genomicsmethods govt humans initiation mammaliangenetics mapping membrane messengeranalysisgenetics micegenetics molecular motifs non-us physical protein proteinsgenetics proteomechemistrygenetics research rna sequence site splicinggenetics structure support tags tertiary transcription untranslatedanalysisgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:45 as
	Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data [My Copy] Genome Res, Vol. 12, No. 8. (Aug 2002), pp. 1286-1293. by H. Kochiwa, R. Suzuki, T. Washio, et al.R. Saito, H. Bono, P. Carninci, Y. Okazaki, R. Miki, Y. Hayashizaki, M. Tomita posted to 1001 20020907 alternative analysis analysisstatistics animals array cluster complementarygenetics data databases dna expression forecastingmethods gene geneticgenetics geneticstatistics govt library mice non-us numerical oligonucleotide profilingstatistics regulationgenetics research sequence splicinggenetics support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:44 as
	EST comparison indicates 38\% of human mRNAs contain possible alternative splice forms [My Copy] FEBS Lett, Vol. 474, No. 1. (May 2000), pp. 83-86. by D. Brett, J. Hanke, G. Lehmann, et al.S. Haase, S. Delbruck, S. Krueger, J. Reich, P. Bork posted to 1915 20000718 alternative comparative databases deletion exons factual gene humans messengerchemistry proteinsgenetics rna software splicing study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:44 as
	The microRNA Registry [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (Jan 2004), pp. D109-D111. by Griffiths S. Jones posted to 0500 20040121 acid animals base biology computational conformation databases humans internet micrornaschemistrygenetics nucleic registries sequence by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as
	The human genome browser at UCSC [My Copy] Genome Res, Vol. 12, No. 6. (Jun 2002), pp. 996-1006. by W. J. Kent, C. W. Sugnet, T. S. Furey, et al.K. M. Roskin, T. H. Pringle, A. M. Zahler, D. Haussler posted to 1001 20020702 acid california database databases expression gene genes genetic genome govt homology human humans management messenger non-phs non-us nucleic phs research rna sequence software structural support systems universitiestrends us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	The UCSC Genome Browser Database [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (Jan 2003), pp. 51-54. by D. Karolchik, R. Baertsch, M. Diekhans, et al.T. S. Furey, A. Hinrichs, Y. T. Lu, K. M. Roskin, M. Schwartz, C. W. Sugnet, D. J. Thomas, R. J. Weber, D. Haussler, W. J. Kent posted to 0400 20030315 and animals california database databases genetic genome genomics govt human humans information management mice non-us phs research retrieval storage support systems us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	Ensembl 2005 [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (Jan 2005), pp. D447-D453. by T. Hubbard, D. Andrews, M. Caccamo, et al.G. Cameron, Y. Chen, M. Clamp, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, Fernandez X. M. Suarez, J. Gilbert, M. Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, F. Kokocinsci, D. London, I. Longden, G. Mcvicker, C. Melsopp, P. Meidl, S. Potter, G. Proctor, M. Rae, D. Rios, M. Schuster, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, S. Trevanion, Ureta A. Vidal, J. Vogel, S. White, C. Woodwark, E. Birney posted to 0900 20050416 acid alignment animals base cattle databases dogs genomics govt humans interface internet mice non-us nucleic phs rats research sequence software support us user-computer by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	RefSeq and LocusLink: NCBI gene-centered resources [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (Jan 2001), pp. 137-140. by K. D. Pruitt, D. R. Maglott posted to 1001 20010303 alignment animals biotechnology chromosome databases factual genes health humans information institutes internet library mapping medicine messengergenetics national of proteinsgenetics rna sequence services states structuralgenetics united us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:33 as
	Introducing RefSeq and LocusLink: curated human genome resources at the NCBI [My Copy] Trends Genet, Vol. 16, No. 1. (Jan 2000), pp. 44-47. by K. D. Pruitt, K. S. Katz, H. Sicotte, D. R. Maglott posted to 0900 20000226 databases factual genome human humans internet by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:32 as
	Interpolated Markov models for eukaryotic gene finding [My Copy] Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31. by S. L. Salzberg, M. Pertea, A. L. Delcher, M. J. Gardner, H. Tettelin posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as
	Finding genes in DNA with a Hidden Markov Model [My Copy] J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141. by J. Henderson, S. Salzberg, K. H. Fasman posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as
	Predictive identification of exonic splicing enhancers in human genes [My Copy] Science, Vol. 297, No. 5583. (Aug 2002), pp. 1007-1013. by W. G. Fairbrother, R. F. Yeh, P. A. Sharp, C. B. Burge posted to 1001 20020829 acid analysis biology complementary computational consensus databases dna exons genes genome govt human humans hypoxanthine introns mutation non-us nucleic oligonucleotidesgenetics phosphoribosyltransferasegenetics phs point regulatory research rna sequence sequences splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:23 as
	Comparative gene prediction in human and mouse [My Copy] Genome Res, Vol. 13, No. 1. (Jan 2003), pp. 108-117. by G. Parra, P. Agarwal, J. F. Abril, T. Wiehe, J. W. Fickett, R. Guigo posted to 0400 20030318 22genetics acid animals biologymethods chromosomes comparative computational databases forecastingmethods genes genetic genome govt human humans mice non-us nucleic of pair predictive reproducibility research results software structuralgenetics study support tests value by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as
	Combining diverse evidence for gene recognition in completely sequenced bacterial genomes [My Copy] Nucleic Acids Res, Vol. 26, No. 12. (Jun 1998), pp. 2941-2947. by D. Frishman, A. Mironov, H. W. Mewes, M. Gelfand posted to 0001 19980605 algorithms alignmentmethods analysis bacillus bacterial codon coligenetics databases dna escherichia factual frames genome govt initiator non-us open proteinsgenetics reading research sequence software subtilisgenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as
	GAZE: a generic framework for the integration of gene-prediction data by dynamic programming [My Copy] Genome Res, Vol. 12, No. 9. (Sep 2002), pp. 1418-1427. by K. L. Howe, T. Chothia, R. Durbin posted to 0400 20021031 acid algorithms alignment and animals biologymethodsstatistics caenorhabditis comparative computational data databases elegansgenetics factual forecastingmethods genes genetic genome govt helminthgenetics homology information internet models non-us nucleic numerical probability research retrievalstatistics rna sequence sites software storage structural study support tagged trans-splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:15 as
	Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions [My Copy] Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582. by C. Wei, P. Lamesch, M. Arumugam, et al.J. Rosenberg, P. Hu, M. Vidal, M. R. Brent posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	Predicting full-length transcripts [My Copy] Trends Biotechnol, Vol. 20, No. 7. (Jul 2002) by M. R. Brent posted to 0400 20021126 algorithms alignmentmethods analysis and animals conserved databases dnamethodstrends exonsgenetics expression gene genome govt humans information mice non-phs phs profilingmethodstrends protein research retrievalmethods sequence sequencegenetics software storage support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:10 as
	Assessing protein coding region integrity in cDNA sequencing projects [My Copy] Bioinformatics, Vol. 14, No. 5. (Jun 1998), pp. 384-390. by A. A. Salamov, T. Nishikawa, M. B. Swindells posted to 0001 19980731 analysis base biology codon complementarygenetics computational databases dna factual frames humans initiatorgenetics messengergenetics open proteinsgenetics reading rna sequence by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:01 as
	Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences [My Copy] Bioinformatics, Vol. 15, No. 11. (Nov 1999), pp. 887-899. by N. Pavy, S. Rombauts, P. Dehais, et al.C. Mathe, D. V. Ramana, P. Leroy, P. Rouze posted to alternative contig dnamethods exonsgenetics sequence splicinggenetics study 20000608 computational evaluation reproducibility software studies support comparative mappingmethods 0900 arabidopsisgenetics genetic govt of protein research results validation analysis biologymethods databases factual genome models non-us plant by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:26 as
	Hidden Markov models for sequence analysis: extension and analysis of the basic method [My Copy] Comput Appl Biosci, Vol. 12, No. 2. (Apr 1996), pp. 95-107. by R. Hughey, A. Krogh posted to amino factual models 0001 algorithms chains studies alignmentmethodsstatistics evaluation govt homology non-us sequence acid analysismethodsstatistics data domainsgenetics humans markov numerical src statistical support us 19960401 animals base databases non-phs research software by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:09 as
	Comparative ab initio prediction of gene structures using pair HMMs [My Copy] Bioinformatics, Vol. 18, No. 10. (Oct 2002), pp. 1309-1318. by I. M. Meyer, R. Durbin posted to databases software specificity alignmentmethods chains mice sequence 0500 algorithms comparative exonsgenetics expression genetic models regulation analysis animals markov proteomicsmethods research study 20030506 acid and dnamethods gene govt humans non-us nucleic of reproducibility results sensitivity support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:59 as
	Genome-wide detection of alternative splicing in expressed sequences of human genes [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (Jul 2001), pp. 2850-2859. by B. Modrek, A. Resch, C. Grasso, C. Lee posted to 1001 20010803 alignment alternative antigenschemistrygenetics base biology computational consensus conserved databases exonsgenetics expressed familygenetics genesgenetics genome genomics govt hla-d human humans internet intronsgenetics kinasesgenetics messengeranalysisgenetics multigene non-phs non-us nucleotidegenetics of polymorphism protein-serine-threonine reproducibility research results rna sequence sequencegenetics single sitesgenetics splice splicinggenetics support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:57 as
	Increase of functional diversity by alternative splicing [My Copy] Trends Genet, Vol. 19, No. 3. (Mar 2003), pp. 124-128. by E. V. Kriventseva, I. Koch, R. Apweiler, et al.M. Vingron, P. Bork, M. S. Gelfand, S. Sunyaev posted to 0500 20030605 acid acidsmetabolism alternative amino animals biology computational databases genetics humans isoformsanalysischemistry ligands models molecular protein selection sequence splicing structure tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:56 as
	Analysis of canonical and non-canonical splice sites in mammalian genomes [My Copy] Nucleic Acids Res, Vol. 28, No. 21. (Nov 2000), pp. 4364-4375. by M. Burset, I. A. Seledtsov, V. V. Solovyev posted to 1001 20010228 animals base biology computational consensus conserved databases exonsgenetics expressed genome govt humans intronsgenetics non-us of reproducibility research results rna sequence sequencegenetics sitesgenetics software splice splicinggenetics support tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	Feature selection for splice site prediction: a new method using EDA-based feature ranking [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (May 2004) by Y. Saeys, S. Degroeve, D. Aeyels, P. Rouze, Y. Van de Peer posted to 0500 20040826 adenosinemetabolism algorithms arabidopsisgenetics base biologymethodsstatistics chromosomes comparative compositiongenetics computational data databases genetic guaninemetabolism numerical of plantclassificationgenetics plantgenetics predictive rna sitesgenetics software softwarestatistics splice study tests validation value by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:54 as
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networks	64
bioinformatics	58
relational_model	44
data	40
web	40
software	39
data-mining	34
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2008	20
cache	20
cs387h	20
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2007	13
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resources	11
vldb	11
2005	10
2009	10
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homology	10
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phylogeny	10
rdf	10
sql	10
e-science	9
expression	9
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nexml	9
olap	9
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