Group: Bioinformatics - with tag dna [108 articles] Export

Recent papers posted by members of the Bioinformatics group with tag dna

	Nucleic Acid Structure Analysis Mathematics for Local Cartesian and Helical Structure Parameters That Are Truly Comparable Between Structures [My Copy] Journal of Molecular Biology, Vol. 237, No. 1. (17 March 1994), pp. 125-156. by M. Babcock posted to structure dna bioinformatics analysis by svozil to the group Bioinformatics on 2009-08-17 08:29:51 as
	BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server [My Copy] Bioinformatics (23 March 2009), btp165. by Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden posted to analysis based biolinux distribution dna linux microarray server ubuntu web by dswan to the group Bioinformatics on 2009-05-15 11:10:08 as along with 8 people jfr guhjy djkt chrisamiller renatomilani phoenixzxl natstreet druvus
	Decoding randomly ordered DNA arrays. [My Copy] Genome research, Vol. 14, No. 5. (May 2004), pp. 870-877. by Kevin L. Gunderson, Semyon Kruglyak, Michael S. Graige, et al.Francisco Garcia, Bahram G. Kermani, Chanfeng Zhao, Diping Che, Todd Dickinson, Eliza Wickham, Jim Bierle, Dennis Doucet, Monika Milewski, Robert Yang, Chris Siegmund, Juergen Haas, Lixin Zhou, Arnold Oliphant, Jian-Bing B. Fan, Steven Barnard, Mark S. Chee posted to arrays decoding dna illumina ordered randomly by dswan to the group Bioinformatics on 2009-05-06 11:30:12 as along with 5 people and 1 group daforerog ptrobajo rschulz xwbcn jeremymiller GeschwindLab
	DNAPlotter: circular and linear interactive genome visualization [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), pp. 119-120. by Tim Carver, Nick Thomson, Alan Bleasby, Matthew Berriman, Julian Parkhill posted to circular dna genome linear visualisation by dswan to the group Bioinformatics on 2009-01-05 11:18:07 as along with 12 people and 1 group kshameer jandot cisevol ewilban1 orzenil barriot guhjy nuin natstreet GustavoLacerda druvus treangen BergmanLab
	Next-generation DNA sequencing. [My Copy] Nature biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to 454 bioinformatics dna emulsion genomics heliscope illumina next-gen pcr polonator review sanger sequencing solexa solid by behindtherabbit to the group Bioinformatics on 2008-12-08 18:20:22 as along with 46 people and 2 groups Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Roswell Cancer Crosstalk Oxford Virology
	Knowledge-based prediction of DNA atomic structure from nucleic sequence. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 16, No. 2. (2005), pp. 12-21. by Marcos J. Araúzo-Bravo, Akinori Sarai posted to bioinformatics dna dna_structure by shantanu to the group Bioinformatics on 2007-10-18 17:40:37 as along with 1 person and 1 group echcram structural_bioinformatics
	Evidence of ancient DNA reveals the first European lineage in Iron Age Central China. [My Copy] Proc Biol Sci (24 April 2007) by C Z Z. Xie, C X X. Li, Y Q Q. Cui, et al.Q C C. Zhang, Y Q Q. Fu, H Zhu, H Zhou posted to dna ancient by kaspermunch to the group Bioinformatics on 2007-04-30 10:01:18 as
	Genetic isolation of a now extinct population of bottlenose dolphins (Tursiops truncatus). [My Copy] Proc Biol Sci (24 April 2007) by Courtney Nichols, Jerry Herman, Oscar E E. Gaggiotti, Keith M M. Dobney, Kim Parsons, A Rus R. Hoelzel posted to dna ancient by kaspermunch to the group Bioinformatics on 2007-04-30 09:59:03 as along with 1 person and 1 group cursonivel1 cursonivel1
	Genomic sequencing of Pleistocene cave bears. [My Copy] Science, Vol. 309, No. 5734. (22 July 2005), pp. 597-599. by J. P. Noonan, M. Hofreiter, D. Smith, et al.J. R. Priest, N. Rohland, G. Rabeder, J. Krause, J. C. Detter, S. Pääbo, E. M. Rubin posted to ancient dna by kaspermunch to the group Bioinformatics on 2007-02-27 20:38:38 as along with 2 people joshuashen werwiesel
	Nuclear gene sequences from a late pleistocene sloth coprolite. [My Copy] Curr Biol, Vol. 13, No. 13. (1 July 2003), pp. 1150-1152. by H. Poinar, M. Kuch, G. Mcdonald, P. Martin, S. Pääbo posted to ancient dna by kaspermunch to the group Bioinformatics on 2007-02-27 20:36:43 as
	Evolution, systematics, and phylogeography of pleistocene horses in the new world: a molecular perspective. [My Copy] PLoS biology, Vol. 3, No. 8. (August 2005) by J. Weinstock, E. Willerslev, A. Sher, et al.W. Tong, S. Y. Ho, D. Rubenstein, J. Storer, J. Burns, L. Martin, C. Bravi, A. Prieto, D. Froese, E. Scott, L. Xulong, A. Cooper posted to ancient dna genetics population by kaspermunch to the group Bioinformatics on 2007-02-27 20:33:17 as along with 1 person usagi-kirin
	Mitochondrial DNA and human evolution. [My Copy] Nature, Vol. 325, No. 6099. (7 1987), pp. 31-36. by R. L. Cann, M. Stoneking, A. C. Wilson posted to dna mitochondria by neveaire to the group Bioinformatics on 2007-02-16 19:56:52 as along with 5 people and 3 groups yangjustinc lpreeves Archaeogenetics Bobbi candypmcg Biostatistics Computational-Genomics Neuroscience
	Reanalysis of Eurasian population history: ancient DNA evidence of population affinities. [My Copy] Hum Biol, Vol. 78, No. 4. (August 2006), pp. 413-440. by C. C. Bennett, F. A. Kaestle posted to population genetics dna ancient by kaspermunch to the group Bioinformatics on 2007-02-11 19:27:51 as along with 1 person candypmcg
	Genomic surgery for lung cancer. [My Copy] J Surg Res, Vol. 117, No. 1. (2004), pp. 107-13. by D. S. Schrump posted to genome-chromatin use therapygeneticstherapy regulation peptides neoplasticdrug neoplasmsdrug methylation lung humans histone genetic gene expression engineeringmethods effects dna disassemblydrug derivativespharmacologytherapeutic depsipeptides deacetylases cyclicpharmacologytherapeutic chromatin azacitidineanalogs assembly antineoplastic animals and agentspharmacologytherapeutic by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as along with 1 group ProkaryoteInterestGroup
	Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. [My Copy] Mol Cell, Vol. 15, No. 4. (2004), pp. 595-605. by S. A. Sarraf, I. Stancheva posted to macromolecular lysinemetabolism islands interferingmetabolism humans histonesmetabolism hela govt genetics gene factors dna-binding dna disassembly cpg chromatin cells carrier biological assembly and genome-chromatin two-hybrid transcription techniques system support substances small silencing s rna research replication regions proteinsmetabolism proteinsgeneticsmetabolism proteinsgenetics protein promoter phase non-us models methyltransferasesmetabolism methylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:48 as along with 1 group ProkaryoteInterestGroup
	Genomic DNA methylation: the mark and its mediators. [My Copy] Trends Biochem Sci, Vol. 31, No. 2. (2006), pp. 89-97. by R. J. Klose, A. P. Bird posted to genome-chromatin transcription syndromephysiopathology support silencingphysiology rett research regulation proteinsmetabolismphysiology protein non-us neoplasmsgenetics methylationdrug methyl-cpg-binding islandsphysiology intestinal humans govt geneticphysiology geneticdrug gene factorsphysiology expression epigenesis effectsphysiology effects dna-binding dna cytosine-5--methyltransferasemetabolism cpg animals 2genetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as along with 1 group ProkaryoteInterestGroup
	Cooperative interactions between epigenetic modifications and their function in the regulation of chromosome architecture. [My Copy] Bioessays, Vol. 25, No. 8. (2003), pp. 792-7. by F. Weissmann, F. Lyko posted to genome-chromatin support research non-us models methylation humans govt genetic epigenesis dna chromosomesgenetics animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as along with 1 group ProkaryoteInterestGroup
	Biparental hydatidiform moles: a maternal effect mutation affecting imprinting in the offspring. [My Copy] Hum Reprod Update, Vol. 12, No. 3. (2006), pp. 233-42. by I. B. Van den Veyver, Al T. K. Hussaini posted to genome-chromatin uterine support research recessivegenetics pregnancy nih neoplasmsclassificationdiagnosisgenetics mutation moleclassificationdiagnosisgenetics methylation imprinting hydatidiform humans genomic genes female extramural dna complicationsgenetics chromatinmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:45 as along with 1 group ProkaryoteInterestGroup
	The marks, mechanisms and memory of epigenetic states in mammals. [My Copy] Biochem J, Vol. 356, No. Pt 1. (2001), pp. 1-10. by V. K. Rakyan, J. Preis, H. D. Morgan, E. Whitelaw posted to methylation mammalsgenetics intercellular imprinting govt genomic genetic gene expression dosage dna compensation chromatinmetabolism animals and genome-chromatin support signaling research repressor regulation proteins peptides non-us models mice by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:44 as along with 1 group ProkaryoteInterestGroup
	Gene targeting in plants: fingers on the move. [My Copy] Trends Plant Sci, Vol. 11, No. 4. (2006), pp. 159-61. by S. Kumar, G. C. Allen, W. F. Thompson posted to genome-chromatin zinc us targetingmethods support research repair recombination plantsgenetics plant non-us non-phs govt genome genetic gene fingersphysiology endodeoxyribonucleaseschemistrymetabolism dna disassembly chromatin assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Silencing of transposable elements in plants. [My Copy] Trends Plant Sci, Vol. 6, No. 11. (2001), pp. 527-34. by H. Okamoto, H. Hirochika posted to genome-chromatin transposable transcription support silencing rna research regulation processing post-transcriptional plantsgenetics plant non-us mammalsgenetics govt genetic gene expression elementsgenetics elegansgeneticsmetabolism drosophilagenetics dna deletion caenorhabditis arabidopsisgeneticsmetabolism animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	The radioresistance kinase TLK1B protects the cells by promoting repair of double strand breaks. [My Copy] BMC Mol Biol, Vol. 6 (2005) by Sunavala G. Dossabhoy, S. K. Balakrishnan, S. Sen, S. Nuthalapaty, A. De Benedetti posted to genome-chromatin transfection tolerance support research repair radiation protein-serine-threonine plasmids phosphorylation non-us line kinasesgeneticsphysiology ionizing humans histonesmetabolism govt dna disassembly damage chromatin cell assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis. [My Copy] Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5. by F. Magdinier, S. G. D'Estaing, C. Peinado, et al.B. Demirci, C. Berthet, J. F. Guerin, R. Dante posted to genome-chromatin tumor suppressor support spermatozoametabolism research regulation protein p53genetics oocytesmetabolism non-us mice methylation male kinetics islandsgenetics humans govt genes gene fetal female expression embryonic dna developmentgenetics developmental cpg brca1 blastocystmetabolism animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. [My Copy] J Biol Chem, Vol. 281, No. 14. (2006), pp. 9560-8. by N. Schonrock, V. Exner, A. Probst, W. Gruissem, L. Hennig posted to genome-chromatin transcription support silencing research proteinsbiosynthesisgenetics proteins profiling non-us non-histonebiosynthesisgenetics mutational molecular heterochromatinmetabolism govt genetic gene expression dna-binding dna disassemblygenetics chromosomal chromatin chaperones assembly arabidopsisgenetics and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:39 as along with 1 group ProkaryoteInterestGroup
	[Transcriptome and non-coding RNAs: so many mRNA-like non-coding RNAs are really functional?] [My Copy] Tanpakushitsu Kakusan Koso, Vol. 49, No. 16. (2004), pp. 2521-8. by A. Kanai posted to genome-chromatin untranslatedclassificationgeneticsphysiology transcription sequence rna reading open messenger imprintinggenetics humans genomic geneticgenetics genetic frames dosage dna disassemblygenetics computational complementary compensation chromatin biology assembly antisense animals and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:36 as along with 1 group ProkaryoteInterestGroup
	Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. [My Copy] Genes Dev, Vol. 19, No. 14. (2005), pp. 1656-61. by B. Chai, J. Huang, B. R. Cairns, B. C. Laurent posted to genome-chromatin us triphosphatemetabolism transcription temperature support saccharomyces research repair recombination proteinsgeneticsmetabolism phs nih mutation kinetics govt genetic genes fungal factorsgeneticsmetabolism extramural dna-binding dna disassembly chromatin cerevisiaegeneticsmetabolism cerevisiae assembly and adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	Role of transposable elements in heterochromatin and epigenetic control. [My Copy] Nature, Vol. 430, No. 6998. (2004), pp. 471-6. by Z. Lippman, A. V. Gendrel, M. Black, et al.M. W. Vaughn, N. Dedhia, W. R. Mccombie, K. Lavine, V. Mittal, B. May, K. D. Kasschau, J. C. Carrington, R. W. Doerge, V. Colot, R. Martienssen posted to sequencesgenetics sequence rna research repeat regulation proteinsgeneticsmetabolism proteinsgenetics plantgenetics plant phs oligonucleotide non-us non-phs methylation interferinggeneticsmetabolism imprinting homeodomain heterochromatingenetics govt genomic geneticgenetics gene factorsgeneticsmetabolism expression epigenesis elementsgenetics dna-binding dna cytosine-5--methyltransferasemetabolism cluster chromosomes array arabidopsisgenetics arabidopsis analysis genome-chromatin us transposable transcription tandem support small by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	DNA methylation in animal development. [My Copy] Semin Cell Dev Biol, Vol. 14, No. 1. (2003), pp. 53-65. by R. R. Meehan posted to genome-chromatin support research regulation proteinsphysiology non-us modification methylation methylasesgenetics imprinting govt genomic gene expression dna-binding dna developmentalgenetics chromatinmetabolismphysiology animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	Maternal control of seed development. [My Copy] Semin Cell Dev Biol, Vol. 12, No. 5. (2001), pp. 381-6. by A. M. Chaudhury, F. Berger posted to genome-chromatin transcription silencingphysiology seedsembryologygeneticsphysiology regulation proteinsgeneticsphysiology proteins plant methylation imprintinggeneticsphysiology germ genomic gene fertilizationgeneticsphysiology factorsgeneticsphysiology expression dna developmentalgeneticsphysiology cellsphysiology arabidopsis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	Remodelling chromatin on a global scale: a novel protective function of p53. [My Copy] Carcinogenesis, Vol. 25, No. 9. (2004), pp. 1551-7. by S. J. Allison, J. Milner posted to genome-chromatin ultraviolet tumor transcription suppressor support research repairphysiology rays protein p53physiology non-us humans histonesmetabolism govt geneticradiation effects dnaphysiologyradiation dna damagegenetics chromatinphysiologyradiation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:30 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent chromatin-remodeling complexes in DNA double-strand break repair: remodeling, pairing and (re)pairing. [My Copy] Cell Cycle, Vol. 4, No. 12. (2005), pp. 1713-5. by J. Huang, B. Liang, J. Qiu, B. C. Laurent posted to genome-chromatin triphosphatemetabolism support research repair pairing nih multiprotein extramural dna disassembly damage complexesmetabolism chromosome chromatingeneticsmetabolism chromatin assembly animals and adenosinetriphosphatasemetabolism adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:30 as along with 1 group ProkaryoteInterestGroup
	H2AX: tailoring histone H2A for chromatin-dependent genomic integrity. [My Copy] Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15. by A. Li, Eirin J. M. Lopez, J. Ausio posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as along with 1 group ProkaryoteInterestGroup
	Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila. [My Copy] Methods Mol Biol, Vol. 287 (2004), pp. 151-68. by M. D. Garfinkel, V. E. Sollars, X. Lu, D. M. Ruden posted to genome-chromatin us trait testsmethods techniques support selection research quantitative proteinsantagonists precipitin phs non-us molecular methylation male loci inhibitors hydroxamic hsp90 histonesanalysismetabolism heat-shock govt genetics genetic female epigenesis drosophilagenetics dna disassembly chromatin biologymethods assembly animals and acidspharmacology acetylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:26 as along with 1 group ProkaryoteInterestGroup
	TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. [My Copy] Genes Dev, Vol. 19, No. 8. (2005), pp. 955-64. by N. Bachman, M. E. Gelbart, T. Tsukiyama, J. D. Boeke posted to genome-chromatin us transfergenetics transcription tfiiibgenetics support subunitsgenetics study specificity species saccharomyces rna retroelementsgenetics research recombination reaction proteinsgenetics protein primers polymerase phs nucleosomesgeneticsmetabolism nih immunoprecipitation govt geneticgenetics factorsgenetics factor extramural dna disassemblygenetics comparative chromatin chain cerevisiaegenetics cerevisiae assembly and adenosinetriphosphatasegenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:22 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent chromatin remodeling and DNA double-strand break repair. [My Copy] Cell Cycle, Vol. 4, No. 8. (2005), pp. 1011-4. by H. van Attikum, S. M. Gasser posted to adenosine genome-chromatin triphosphatechemistry transcription support saccharomyces research repair recombination proteinschemistry phosphorylation nucleosomeschemistrymetabolism non-us models histoneschemistry govt genetic factorschemistry dnachemistry dna-binding dna disassembly damage chromatinchemistry chromatin cerevisiae biological assembly arabidopsismetabolism and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	The role of mammalian DNA methyltransferases in the regulation of gene expression. [My Copy] Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47. by Turek J. Plewa, P. P. Jagodzinski posted to genome-chromatin transcription support research regulation protein non-us isoforms humans govt genetic gene expression epigenesis dna disassembly cytosine-5--methyltransferasechemistrymetabolism chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	Chromatin remodeling and the maintenance of genome integrity. [My Copy] Biochim Biophys Acta, Vol. 1677, No. 1-3. (2004), pp. 158-64. by S. Allard, J. Y. Masson, J. Cote posted to genome-chromatin variation u1 triphosphatemetabolism support substances small rna-binding ribonucleoprotein research repairgenetics proteins nucleargeneticsmetabolism non-us macromolecular humans histonesgeneticsmetabolism histone govt genome genetics drosophila dna disassembly chromatin assembly animals and adenosine acetyltransferasesgeneticsmetabolism acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:12 as along with 1 group ProkaryoteInterestGroup
	Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays [My Copy] Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 5-13. by Waibhav Tembe, Nela Zavaljevski, Elizabeth Bode, et al.Catherine Chase, Jeanne Geyer, Leonard Wasieloski, Gary Benson, Jaques Reifman posted to analysis barcoding dna kew by kehan to the group Bioinformatics on 2007-01-02 13:23:30 as along with 1 person and 2 groups druvus biodiversity_conservation GrassBase
	Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays [My Copy] Science, Vol. 302, No. 5653. (Dec 2003), pp. 2141-2144. by J. M. Johnson, J. Castle, Garrett P. Engele, et al.Z. Kan, P. M. Loerch, C. D. Armour, R. Santos, E. E. Schadt, R. Stoughton, D. D. Shoemaker posted to 0500 20040107 alternative amyloid analysis array beta-protein cell chain coa complementary curve data distribution dna exons expressed genome human humans hydrolases hydroxymethylglutaryl isoformsanalysis line molecular monoester oligonucleotide phosphoric polymerase precursoranalysisgenetics precursorsgenetics protein proteinsanalysisgenetics reaction reductasesanalysisgenetics reverse rna roc sequence splicing tags tissue transcriptase by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences [My Copy] Nucleic Acids Res, Vol. 32, No. 17. (2004), pp. 5096-5103. by K. Iida, M. Seki, T. Sakurai, et al.M. Satou, K. Akiyama, T. Toyoda, A. Konagaya, K. Shinozaki posted to 0900 20041013 alternative arabidopsisgeneticsgrowth base chromosome cold complementarychemistry developmentmetabolism dna genome govt mapping messengermetabolism non-us plant plantmetabolism precursorsmetabolism research rna sequence splicing support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Integrative annotation of 21,037 human genes validated by full-length cDNA clones [My Copy] PLoS Biol, Vol. 2, No. 6. (Jun 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Yamaguchi Y. Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, Thierry J. Mieg, Thierry D. Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, Bonaldo F. Mde, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, Fukami K. Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, Mariage R. Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, Piatier D. Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as
	Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes [My Copy] RNA, Vol. 10, No. 7. (Jul 2004), pp. 1005-1018. by H. Itoh, T. Washio, M. Tomita posted to 0500 20040824 acid alternative animals base complementarygenetics conserved data dna drosophila evolution exonsgenetics govt humans intronsgenetics melanogastergenetics mice molecular non-us nucleic oryza regulatory research sativagenetics sequence sequences species specificity splicinggenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	Genome-wide assembly and analysis of alternative transcripts in mouse [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754. by A. A. Sharov, D. B. Dudekula, M. S. Ko posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression [My Copy] Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41. by J. Reboul, P. Vaglio, J. F. Rual, et al.P. Lamesch, M. Martinez, C. M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, T. Moore, Hudson, J. L. Hartley, M. A. Brasch, J. Vandenhaute, S. Boulton, G. A. Endress, S. Jenna, E. Chevet, V. Papasotiropoulos, P. P. Tolias, J. Ptacek, M. Snyder, R. Huang, M. R. Chance, H. Lee, Doucette L. Stamm, D. E. Hill, M. Vidal posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Complete sequencing and characterization of 21,243 full-length human cDNAs [My Copy] Nat Genet, Vol. 36, No. 1. (Jan 2004), pp. 40-45. by T. Ota, Y. Suzuki, T. Nishikawa, et al.T. Otsuki, T. Sugiyama, R. Irie, A. Wakamatsu, K. Hayashi, H. Sato, K. Nagai, K. Kimura, H. Makita, M. Sekine, M. Obayashi, T. Nishi, T. Shibahara, T. Tanaka, S. Ishii, J. Yamamoto, K. Saito, Y. Kawai, Y. Isono, Y. Nakamura, K. Nagahari, K. Murakami, T. Yasuda, T. Iwayanagi, M. Wagatsuma, A. Shiratori, H. Sudo, T. Hosoiri, Y. Kaku, H. Kodaira, H. Kondo, M. Sugawara, M. Takahashi, K. Kanda, T. Yokoi, T. Furuya, E. Kikkawa, Y. Omura, K. Abe, K. Kamihara, N. Katsuta, K. Sato, M. Tanikawa, M. Yamazaki, K. Ninomiya, T. Ishibashi, H. Yamashita, K. Murakawa, K. Fujimori, H. Tanai, M. Kimata, M. Watanabe, S. Hiraoka, Y. Chiba, S. Ishida, Y. Ono, S. Takiguchi, S. Watanabe, M. Yosida, T. Hotuta, J. Kusano, K. Kanehori, Takahashi A. Fujii, H. Hara, T. O. Tanase, Y. Nomura, S. Togiya, F. Komai, R. Hara, K. Takeuchi, M. Arita, N. Imose, K. Musashino, H. Yuuki, A. Oshima, N. Sasaki, S. Aotsuka, Y. Yoshikawa, H. Matsunawa, T. Ichihara, N. Shiohata, S. Sano, S. Moriya, H. Momiyama, N. Satoh, S. Takami, Y. Terashima, O. Suzuki, S. Nakagawa, A. Senoh, H. Mizoguchi, Y. Goto, F. Shimizu, H. Wakebe, H. Hishigaki, T. Watanabe, A. Sugiyama, M. Takemoto, B. Kawakami, M. Yamazaki, K. Watanabe, A. Kumagai, S. Itakura, Y. Fukuzumi, Y. Fujimori, M. Komiyama, H. Tashiro, A. Tanigami, T. Fujiwara, T. Ono, K. Yamada, Y. Fujii, K. Ozaki, M. Hirao, Y. Ohmori, A. Kawabata, T. Hikiji, N. Kobatake, H. Inagaki, Y. Ikema, S. Okamoto, R. Okitani, T. Kawakami, S. Noguchi, T. Itoh, K. Shigeta, T. Senba, K. Matsumura, Y. Nakajima, T. Mizuno, M. Morinaga, M. Sasaki, T. Togashi, M. Oyama, H. Hata, M. Watanabe, T. Komatsu, Mizushima J. Sugano, T. Satoh, Y. Shirai, Y. Takahashi, K. Nakagawa, K. Okumura, T. Nagase, N. Nomura, H. Kikuchi, Y. Masuho, R. Yamashita, K. Nakai, T. Yada, Y. Nakamura, O. Ohara, T. Isogai, S. Sugano posted to 0500 20 20040203 21-22 analysis and biology chromosomes comparative complementary computational dna frames govt human humans messenger non-us open pair reading research rna sequence study support y by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102. by J. M. Johnson, S. Edwards, D. Shoemaker, E. E. Schadt posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	Empirical analysis of transcriptional activity in the Arabidopsis genome [My Copy] Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846. by K. Yamada, J. Lim, J. M. Dale, et al.H. Chen, P. Shinn, C. J. Palm, A. M. Southwick, H. C. Wu, C. Kim, M. Nguyen, P. Pham, R. Cheuk, Karlin G. Newmann, S. X. Liu, B. Lam, H. Sakano, T. Wu, G. Yu, M. Miranda, H. L. Quach, M. Tripp, C. H. Chang, J. M. Lee, M. Toriumi, M. M. Chan, C. C. Tang, C. S. Onodera, J. M. Deng, K. Akiyama, Y. Ansari, T. Arakawa, J. Banh, F. Banno, L. Bowser, S. Brooks, P. Carninci, Q. Chao, N. Choy, A. Enju, A. D. Goldsmith, M. Gurjal, N. F. Hansen, Y. Hayashizaki, Johnson C. Hopson, V. W. Hsuan, K. Iida, M. Karnes, S. Khan, E. Koesema, J. Ishida, P. X. Jiang, T. Jones, J. Kawai, A. Kamiya, C. Meyers, M. Nakajima, M. Narusaka, M. Seki, T. Sakurai, M. Satou, R. Tamse, M. Vaysberg, E. K. Wallender, C. Wong, Y. Yamamura, S. Yuan, K. Shinozaki, R. W. Davis, A. Theologis, J. R. Ecker posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as
	Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 [My Copy] Genome Res, Vol. 14, No. 3. (Mar 2004), pp. 331-342. by D. Kampa, J. Cheng, P. Kapranov, et al.M. Yamanaka, S. Brubaker, S. Cawley, J. Drenkow, A. Piccolboni, S. Bekiranov, G. Helt, H. Tammana, T. R. Gingeras posted to 0500 20040318 21genetics 22genetics analysismethods array cell cellschemistrymetabolism chromosome chromosomes data dna expression gene genes geneticgenetics govt human humans jurkat line mappingmethods messengergenetics molecular neoplasmgenetics non-us oligonucleotide pair phs probesgenetics profilingmethods research rna rnagenetics sequence structural structuralgenetics support transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:48 as

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damage	250
repair	188
review	182
evolution	139
rna	133
replication	131
methylation	130
protein	114
genome	108
cancer	91
article	90
c_elegans	90
caenorhabditis_elegans	90
celegans	90
elegans	90
nematode	90
structure	90
wormbase	90
sequence	82
binding	69
transcription	62
genomics	61
chromatin	60
genetics	56
biophysics	55
gene	55
base_sequence	54
epigenetics	54
molecular_sequence_data	54
molecular	53
sequencing	52
methods	50
afm	45
biology	45
bioinformatics	44
checkpoint	43
gold	42
nanotechnology	42
amino_acid_sequence	38
dynamics	38
self-assembly	36
microarray	33
cell	32
analysis	31
sms	31
caenorhabditis_genetics	30
fluorescence	30
pcr	30
genetic	29
origami	29
single-molecule	29
proj1	28
virus	28
fluorescent-microscopy	27
optical	27
alignment	26
cloning_molecular	26
forensic	26
histone	26
human	26
hybridization	26
molecular_dynamics	26
mutation	26
nucleosome	26
animal	25
force	25
fret	25
nucleic-acid	25
simulation	25
caenorhabditis_elegans_genetics	24
electrostatics	24
p53	24
polymerase	24
electrophoresis	23
expression	23
microfluidics	23
animals	22
chromosome	22
diffusion	22
nanoparticles	22
prediction	22
rereplication	22
imprinting	21
nanostructure	21
spectroscopy	21
wlc	21
aging	20
array	20
method	20
phylogeny	20
3d	19
ancient	19
brca1	19
folding	19
humans	19
mitochondria	19
motif	19
proteins	19
regulation	19
atm	18

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