Group: Bioinformatics - with tag genes [70 articles] Export

Recent papers posted by members of the Bioinformatics group with tag genes

	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted to analysis and cluster filtering for genes network by dswan to the group Bioinformatics on 2009-07-10 10:56:46 as along with 6 people zufar shikin lwaldron rdiaz bertelsen erexhepa
	KELLER: estimating time-varying interactions between genes [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i128-136. by Le Song, Mladen Kolar, Eric P. Xing posted to application between correlation genes interactions time varying by dswan to the group Bioinformatics on 2009-05-29 09:02:33 as along with 7 people rdiaz arne yaredo leemond31 roys tmmurali mstumpf
	CodonExplorer: An Online Tool for Analyzing Codon Usage and Sequence Composition, Scaling From Genes to Genomes [My Copy] Bioinformatics (11 March 2009), btp141. by Micah Hamady, Stephanie A. Wilson, Jesse Zaneveld, Noboru Sueoka, Rob Knight posted to application codon composition database genes genomes sequence site usage web by dswan to the group Bioinformatics on 2009-05-07 09:20:46 as along with 1 person nuin
	PASTAA: identifying transcription factors associated with sets of co-regulated genes [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 435-442. by Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas posted to application associated co-regulated factors genes sets transcription by dswan to the group Bioinformatics on 2009-02-16 11:13:10 as along with 11 people bsamal TRHvidsten maximilianh jimineep cassj idonaldson djkt dolchan nuin natstreet druvus
	Selecting control genes for RT-QPCR using public microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 42. by Vlad Popovici, Darlene R. Goldstein, Janine Antonov, Rolf Jaggi, Mauro Delorenzi, Pratyaksha Wirapati posted to control data genes microarray public qpcr selecting by dswan to the group Bioinformatics on 2009-02-09 10:16:15 as along with 7 people daforerog lwaldron jfr Zephyrus guhjy natstreet druvus
	GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by R. Chen, R. Mallelwar, A. Thosar, S. Venkatasubrahmanyam, A. J. Butte posted to application biological clinical condition deg differential expression genes web by dswan to the group Bioinformatics on 2009-01-12 09:49:42 as along with 13 people and 1 group rcr1991 zufar daforerog TRHvidsten jfr ilyashl renatomilani Zephyrus tny guhjy cgaugain barriot GeeSharpMinor Roswell Cancer Crosstalk
	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell Jones, Roderick Jensen, et al.Stephen Harris, Roger Perkins, Federico Goodsaid, Lei Guo, Lisa Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin Barbacioru, Vincent Bertholet, Xiaoxi Cao, Tzu M. Chu, Patrick Collins, Xiao H. Fan, Felix Frueh, James Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest Kawasaki, Quan Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron Peterson, Raj Puri, Richard Shippy, Zhenqiang Su, Yongming Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Wang, Janet Warrington, James Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell Wolfinger, Weida Tong posted to analysis differential expression genes lists meta microarray reproducibiliy sensitivity specificity by dswan to the group Bioinformatics on 2008-12-18 11:16:40 as along with 19 people bsamal maximilianh GustavoG mayercd Zephyrus daforerog oliviawi zufar bandrewfox lwaldron mdharsee shikin rdiaz jfr ugengma guhjy GeeSharpMinor ptrobajo Jonesy
	Structural Relationships between Highly Conserved Elements and Genes in Vertebrate Genomes [My Copy] PLoS ONE, Vol. 3, No. 11. (14 November 2008), e3727. by Hong Sun, Geir Skogerbø, Zhen Wang, Wei Liu, Yixue Li posted to conserved elements genes motifs structural by sameetmehta to the group Bioinformatics on 2008-11-15 01:52:53 as along with 4 people sujaikumar hpaces bpcusack Ema
	Biparental hydatidiform moles: a maternal effect mutation affecting imprinting in the offspring. [My Copy] Hum Reprod Update, Vol. 12, No. 3. (2006), pp. 233-42. by I. B. Van den Veyver, Al T. K. Hussaini posted to genome-chromatin uterine support research recessivegenetics pregnancy nih neoplasmsclassificationdiagnosisgenetics mutation moleclassificationdiagnosisgenetics methylation imprinting hydatidiform humans genomic genes female extramural dna complicationsgenetics chromatinmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:45 as along with 1 group ProkaryoteInterestGroup
	Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis. [My Copy] Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5. by F. Magdinier, S. G. D'Estaing, C. Peinado, et al.B. Demirci, C. Berthet, J. F. Guerin, R. Dante posted to genome-chromatin tumor suppressor support spermatozoametabolism research regulation protein p53genetics oocytesmetabolism non-us mice methylation male kinetics islandsgenetics humans govt genes gene fetal female expression embryonic dna developmentgenetics developmental cpg brca1 blastocystmetabolism animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. [My Copy] Genes Dev, Vol. 19, No. 14. (2005), pp. 1656-61. by B. Chai, J. Huang, B. R. Cairns, B. C. Laurent posted to genome-chromatin us triphosphatemetabolism transcription temperature support saccharomyces research repair recombination proteinsgeneticsmetabolism phs nih mutation kinetics govt genetic genes fungal factorsgeneticsmetabolism extramural dna-binding dna disassembly chromatin cerevisiaegeneticsmetabolism cerevisiae assembly and adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	Gene identification in novel eukaryotic genomes by self-training algorithm [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506. by A. Lomsadze, Ter V. Hovhannisyan, Y. O. Chernoff, M. Borodovsky posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression [My Copy] Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41. by J. Reboul, P. Vaglio, J. F. Rual, et al.P. Lamesch, M. Martinez, C. M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, T. Moore, Hudson, J. L. Hartley, M. A. Brasch, J. Vandenhaute, S. Boulton, G. A. Endress, S. Jenna, E. Chevet, V. Papasotiropoulos, P. P. Tolias, J. Ptacek, M. Snyder, R. Huang, M. R. Chance, H. Lee, Doucette L. Stamm, D. E. Hill, M. Vidal posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Gene structure prediction and alternative splicing analysis using genomically aligned ESTs [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900. by Z. Kan, E. C. Rouchka, W. R. Gish, D. J. States posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	In silico screening for tumour-specific expressed sequences in human genome [My Copy] FEBS Lett, Vol. 508, No. 1. (Nov 2001), pp. 143-148. by A. V. Baranova, A. V. Lobashev, D. V. Ivanov, L. L. Krukovskaya, N. K. Yankovsky, A. P. Kozlov posted to 1001 20020105 databases expressed expression gene genes genetic genome human humans library neoplasm neoplasmsgenetics profilingmethods sequence structural tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing, the gene concept, and evolution [My Copy] Hist Philos Life Sci, Vol. 26, No. 1. (2004) by S. M. Downes posted to 0900 20050511 alternative animals biology concept evolution formation genes genome human humans molecular philosophy splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	Empirical analysis of transcriptional activity in the Arabidopsis genome [My Copy] Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846. by K. Yamada, J. Lim, J. M. Dale, et al.H. Chen, P. Shinn, C. J. Palm, A. M. Southwick, H. C. Wu, C. Kim, M. Nguyen, P. Pham, R. Cheuk, Karlin G. Newmann, S. X. Liu, B. Lam, H. Sakano, T. Wu, G. Yu, M. Miranda, H. L. Quach, M. Tripp, C. H. Chang, J. M. Lee, M. Toriumi, M. M. Chan, C. C. Tang, C. S. Onodera, J. M. Deng, K. Akiyama, Y. Ansari, T. Arakawa, J. Banh, F. Banno, L. Bowser, S. Brooks, P. Carninci, Q. Chao, N. Choy, A. Enju, A. D. Goldsmith, M. Gurjal, N. F. Hansen, Y. Hayashizaki, Johnson C. Hopson, V. W. Hsuan, K. Iida, M. Karnes, S. Khan, E. Koesema, J. Ishida, P. X. Jiang, T. Jones, J. Kawai, A. Kamiya, C. Meyers, M. Nakajima, M. Narusaka, M. Seki, T. Sakurai, M. Satou, R. Tamse, M. Vaysberg, E. K. Wallender, C. Wong, Y. Yamamura, S. Yuan, K. Shinozaki, R. W. Davis, A. Theologis, J. R. Ecker posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as
	Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 [My Copy] Genome Res, Vol. 14, No. 3. (Mar 2004), pp. 331-342. by D. Kampa, J. Cheng, P. Kapranov, et al.M. Yamanaka, S. Brubaker, S. Cawley, J. Drenkow, A. Piccolboni, S. Bekiranov, G. Helt, H. Tammana, T. R. Gingeras posted to 0500 20040318 21genetics 22genetics analysismethods array cell cellschemistrymetabolism chromosome chromosomes data dna expression gene genes geneticgenetics govt human humans jurkat line mappingmethods messengergenetics molecular neoplasmgenetics non-us oligonucleotide pair phs probesgenetics profilingmethods research rna rnagenetics sequence structural structuralgenetics support transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:48 as
	The human genome browser at UCSC [My Copy] Genome Res, Vol. 12, No. 6. (Jun 2002), pp. 996-1006. by W. J. Kent, C. W. Sugnet, T. S. Furey, et al.K. M. Roskin, T. H. Pringle, A. M. Zahler, D. Haussler posted to 1001 20020702 acid california database databases expression gene genes genetic genome govt homology human humans management messenger non-phs non-us nucleic phs research rna sequence software structural support systems universitiestrends us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	A decision tree system for finding genes in DNA [My Copy] J Comput Biol, Vol. 5, No. 4. (Win 1998), pp. 667-680. by S. Salzberg, A. L. Delcher, K. H. Fasman, J. Henderson posted to 0001 19990311 algorithms chains decision dnaclassificationgenetics genes govt markov non-phs phs research support techniques trees us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	Identification of protein coding regions in genomic DNA [My Copy] J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as
	Sequence logos: a new way to display consensus sequences [My Copy] Nucleic Acids Res, Vol. 18, No. 20. (Oct 1990), pp. 6097-6100. by T. D. Schneider, R. M. Stephens posted to 0001 19901025 acid amino bacteriophage base binding chromosome coligenetics data deletion dna dna-directed elements escherichia genes genetic globinsgenetics govt humans lambdagenetics molecular non-us phs polymerasesmetabolism research rna sequence sites support t-phagesenzymologygenetics techniques transposable us viral by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:35 as
	RefSeq and LocusLink: NCBI gene-centered resources [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (Jan 2001), pp. 137-140. by K. D. Pruitt, D. R. Maglott posted to 1001 20010303 alignment animals biotechnology chromosome databases factual genes health humans information institutes internet library mapping medicine messengergenetics national of proteinsgenetics rna sequence services states structuralgenetics united us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:33 as
	Interpolated Markov models for eukaryotic gene finding [My Copy] Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31. by S. L. Salzberg, M. Pertea, A. L. Delcher, M. J. Gardner, H. Tettelin posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as
	Finding genes in DNA with a Hidden Markov Model [My Copy] J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141. by J. Henderson, S. Salzberg, K. H. Fasman posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as
	Predictive identification of exonic splicing enhancers in human genes [My Copy] Science, Vol. 297, No. 5583. (Aug 2002), pp. 1007-1013. by W. G. Fairbrother, R. F. Yeh, P. A. Sharp, C. B. Burge posted to 1001 20020829 acid analysis biology complementary computational consensus databases dna exons genes genome govt human humans hypoxanthine introns mutation non-us nucleic oligonucleotidesgenetics phosphoribosyltransferasegenetics phs point regulatory research rna sequence sequences splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:23 as
	GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (Jul 2003), pp. 3601-3604. by W. H. Majoros, M. Pertea, C. Antonescu, S. L. Salzberg posted to 0500 20030819 analysis arabidopsisgenetics cells chains dnamethods eukaryotic exons genes govt internet introns markov non-phs phs plant research sequence software support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:21 as
	SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model [My Copy] Genome Res, Vol. 13, No. 3. (Mar 2003), pp. 496-502. by M. Alexandersson, S. Cawley, L. Pachter posted to 0500 20030412 alignmentmethodsstatistics animals biologymethodsstatistics chains comparative computational conserved data design dna dnagenetics falciparumgenetics genes govt humans markov mice numerical phs plasmodium protozoangenetics research sequence sequencegenetics software species specificity structural structuralgenetics study support us vivaxgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:19 as
	Comparative gene prediction in human and mouse [My Copy] Genome Res, Vol. 13, No. 1. (Jan 2003), pp. 108-117. by G. Parra, P. Agarwal, J. F. Abril, T. Wiehe, J. W. Fickett, R. Guigo posted to 0400 20030318 22genetics acid animals biologymethods chromosomes comparative computational databases forecastingmethods genes genetic genome govt human humans mice non-us nucleic of pair predictive reproducibility research results software structuralgenetics study support tests value by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as
	Improved microbial gene identification with GLIMMER [My Copy] Nucleic Acids Res, Vol. 27, No. 23. (Dec 1999), pp. 4636-4641. by A. L. Delcher, D. Harmon, S. Kasif, O. White, S. L. Salzberg posted to 0001 19991111 algorithms bacterial chains genes genetic govt markov models non-phs phs research support techniquesstandards us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as
	GAZE: a generic framework for the integration of gene-prediction data by dynamic programming [My Copy] Genome Res, Vol. 12, No. 9. (Sep 2002), pp. 1418-1427. by K. L. Howe, T. Chothia, R. Durbin posted to 0400 20021031 acid algorithms alignment and animals biologymethodsstatistics caenorhabditis comparative computational data databases elegansgenetics factual forecastingmethods genes genetic genome govt helminthgenetics homology information internet models non-us nucleic numerical probability research retrievalstatistics rna sequence sites software storage structural study support tagged trans-splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:15 as
	Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions [My Copy] Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582. by C. Wei, P. Lamesch, M. Arumugam, et al.J. Rosenberg, P. Hu, M. Vidal, M. R. Brent posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	Recent advances in gene structure prediction [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (Jun 2004), pp. 264-272. by M. R. Brent, R. Guigo posted to 0900 20041230 acid animals base conformation exons genes genomicstrends govt humans introns models molecular non-phs non-us nucleic phs proteinschemistrygeneticsmetabolism research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:12 as
	Identification of protein coding regions in the human genome by quadratic discriminant analysis [My Copy] Proc Natl Acad Sci U S A, Vol. 94, No. 2. (Jan 1997), pp. 565-568. by M. Q. Zhang posted to 0001 19970121 analysis base data dnamethods exons genes genome govt human humans molecular multivariate phs project proteinsgenetics research sequence software structural support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:08 as
	Evaluation of gene-finding algorithms by a content-balancing accuracy index [My Copy] J Biomol Struct Dyn, Vol. 19, No. 6. (Jun 2002), pp. 1045-1052. by C. T. Zhang, R. Zhang posted to 0500 20030820 algorithms biology chromosome computational genes govt mapping non-us research support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:07 as
	A gene expression map for the euchromatic genome of Drosophila melanogaster [My Copy] Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660. by V. Stolc, Z. Gauhar, C. Mason, et al.G. Halasz, M. F. van Batenburg, S. A. Rifkin, S. Hua, T. Herreman, W. Tongprasit, P. E. Barbano, H. J. Bussemaker, K. P. White posted to 0900 20041216 algorithms analysis animals array biology computational cycle development dna drosophila drosophilagenetics evolution exons expression female gene genes genetic genome govt insect intergenic introns life male melanogastergeneticsgrowth molecular non-phs non-us oligonucleotide phs probes profiling proteinsgeneticsphysiology research rna sequence splicing stages support synteny transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:04 as
	EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (Jun 2003) by T. S. Larsen, A. Krogh posted to non-us numerical 20031206 and bacillus bacterial bacterialgenetics binding biologymethodsstatistics chains coli coligenetics comparative computational data escherichia framesgenetics genes genetic genome govt helicobacter markov models mycobacterium predictive proteinschemistrygenetics pylorigenetics reading research ribosomeschemistrygenetics sensitivity sitesgenetics specificity statistical structural study subtilisgenetics support tests tuberculosisgenetics value 0500 of open by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:59 as
	The Ensembl automatic gene annotation system [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 942-950. by V. Curwen, E. Eyras, T. D. Andrews, et al.L. Clarke, E. Mongin, S. M. Searle, M. Clamp posted to 0500 biologymethods computational helminth helminthgenetics helminthphysiology mice structural support tandem tests 20040818 acid dnagenetics dosage human proteinsgenetics pseudogenesgenetics sequence tags untranslated us value animals anophelesgenetics caenorhabditisgenetics comparative genome homology insect insectphysiology non-us predictive rats regionsgenetics repeat sequencesgenetics amino dna gene govt of phs software study alignmentmethods automation expressed genes humans research structuralphysiology by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:49 as
	ESTGenes: alternative splicing from ESTs in Ensembl [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 976-987. by E. Eyras, M. Caccamo, V. Curwen, M. Clamp posted to alternative comparative computational rats research animals expressed genetic insect support us caenorhabditis culicidaegenetics elegansgenetics humans mice results structural 0500 20040818 biology caenorhabditisgenetics dna genes govt helminthgenetics non-us phs predictive splicinggenetics value helminth of reproducibility sequence software study tags tests transcription zebrafishgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:38 as
	An assessment of gene prediction accuracy in large DNA sequences [My Copy] Genome Res, Vol. 10, No. 10. (Oct 2000), pp. 1631-1642. by R. Guigo, P. Agarwal, J. F. Abril, M. Burset, J. W. Fickett posted to genes of software composition reproducibility research 1001 humans non-us results structuralgenetics support 20010228 computational dnachemistrygenetics artificialchemistrygenetics base biologymethods chromosomes govt by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:21 as
	Genie--gene finding in Drosophila melanogaster [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 529-538. by M. G. Reese, D. Kulp, H. Tammana, D. Haussler posted to 0900 20000617 analysis animals biologymethods chains comparative computational databases dnamethods drosophila expressed factual genes genetic geneticsgenetics govt insectgenetics markov melanogastergenetics models non-phs phs promoter regions sequence software structural study support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:52 as
	Prediction of complete gene structures in human genomic DNA [My Copy] J Mol Biol, Vol. 268, No. 1. (Apr 1997), pp. 78-94. by C. Burge, S. Karlin posted to 0001 19970425 analysis animals chains comparative data dna exons genes genetic genetics genome govt human introns markov models molecular non-phs phs probability promoter proteinsgenetics regions rna sequence software splicing study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as
	GeneMark.hmm: new solutions for gene finding [My Copy] Nucleic Acids Res, Vol. 26, No. 4. (Feb 1998), pp. 1107-1115. by A. V. Lukashin, M. Borodovsky posted to 0001 19980321 algorithms bacterial bacterialgenetics base chains coligenetics comparative databases dna escherichia evaluation factual genes genetic genome govt markov models phs sequence software studies study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as
	Heuristic approach to deriving models for gene finding [My Copy] Nucleic Acids Res, Vol. 27, No. 19. (Oct 1999), pp. 3911-3920. by J. Besemer, M. Borodovsky posted to 0001 19990911 1genetics bacterial cells chains codon eukaryotic evolution genes genetic genome govt hiv-1genetics human internet markov models molecular non-us phs support t-lymphotropic us viral virus by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as
	Evaluation of gene-finding programs on mammalian sequences [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 817-832. by S. Rogic, A. K. Mackworth, F. B. Ouellette posted to 1001 20010629 analysis animals base comparative composition cytosineanalysis dnamethods exonsgenetics functions genes genetic govt guanineanalysis human likelihood models non-us phylogeny sequence software species specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:49 as
	GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [My Copy] Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618. by J. Besemer, A. Lomsadze, M. Borodovsky posted to 1001 20010728 algorithms alignment and archaeal archaealgenetics bacillus bacterial bacterialgenetics base biologymethods chains codon coligenetics computational computer databases escherichia evolution framesgenetics functions genes geneticgenetics genome initiatorgenetics internet likelihood markov molecular of open overlappinggenetics reading reproducibility results sensitivity sequence simulation software specificity subtilisgenetics transcription translation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as
	GeneID in Drosophila [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 511-515. by G. Parra, E. Blanco, R. Guigo posted to 0900 20000617 alcohol algorithms animals biology computational databases dehydrogenasegenetics drosophila factual genes govt insectgenetics melanogasterenzymologygenetics non-us software structural support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as

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evolution	85
c_elegans	80
caenorhabditis_elegans	80
celegans	80
elegans	80
nematode	80
wormbase	80
caenorhabditis_genetics	70
article	66
genome	53
personality	48
health	44
mutation	41
stress	39
cancer	38
phenotype	35
environment	34
immunity	34
review	32
base_sequence	28
chromosome_mapping	28
correlates	28
molecular_sequence_data	28
microarray	26
expression	25
cloned_genes	24
r	24
analysis	23
human	23
amino_acid_sequence	22
gene	22
culture	21
longitudinal	21
ackn_cgc	20
dna_sequence	20
statistics	20
bioinformatics	19
biology	19
cardiovascular	19
disease	19
genetic	19
genetics	19
hpa-axis	19
qtl	19
behavior	18
cloning_molecular	18
gene_expression	18
protein	18
thelist	18
transcription	18
cortisol	17
genomics	17
physiology	17
alleles	16
blight	16
caenorhabditis_embryology	16
caenorhabditis_physiology	16
cytokines	16
depression	16
late	16
neuroendocrine	16
resistance	16
restriction_mapping	16
sex_determination	16
aging	15
proteins	15
caenorhabditis_growth_and_development	14
estrogen	14
meta-analysis	14
transcription_genetic	14
twins	14
development	13
network	13
potato	13
data	12
endocrine	12
interactions	12
mutant_characteriz	12
sequence_homology_nucleic_acid	12
superlist	12
time	12
breast	11
control	11
database	11
databases	11
expressed	11
genotype	11
molecular	11
networks	11
regulation	11
rna	11
serotonin	11
yeast	11
cell_communication	10
mice	10
mut-lineage	10
sequence	10
software	10
temperature	10
transformation_genetic	10

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