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Group: Bioinformatics - with tag genetic [103 articles]

Recent papers posted by members of the Bioinformatics group with tag genetic
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to genetic hapmap human snp variation by frohike to the group Bioinformatics on 2008-04-04 13:56:06 as ** along with 11 people and 1 group gowtham psique jyuh dchughes djkt lp2 ryanraaum xingxu jasonflannick skumagai mfm11 parkinson's disease references
  • An Introduction to Genetic Algorithms (Complex Adaptive Systems)
    (06 February 1998)
    by Melanie Mitchell
    posted to algorithms book genetic by frohike to the group Bioinformatics on 2008-02-28 10:32:50 as ** along with 6 people and 1 group gkvas mthomure spirit_of_numenor tdgs naturalinformation MarkVanHeeswijk ComplexAdaptiveSystems
  • Genomic surgery for lung cancer.
    J Surg Res, Vol. 117, No. 1. (2004), pp. 107-13.
    by DS Schrump
    posted to genome-chromatin use therapygeneticstherapy regulation peptides neoplasticdrug neoplasmsdrug methylation lung humans histone genetic gene expression engineeringmethods effects dna disassemblydrug derivativespharmacologytherapeutic depsipeptides deacetylases cyclicpharmacologytherapeutic chromatin azacitidineanalogs assembly antineoplastic animals and agentspharmacologytherapeutic by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as **** along with 1 group ProkaryoteInterestGroup
  • Cooperative interactions between epigenetic modifications and their function in the regulation of chromosome architecture.
    Bioessays, Vol. 25, No. 8. (2003), pp. 792-7.
    by F Weissmann, F Lyko
    posted to genome-chromatin support research non-us models methylation humans govt genetic epigenesis dna chromosomesgenetics animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as **** along with 1 group ProkaryoteInterestGroup
  • The marks, mechanisms and memory of epigenetic states in mammals.
    Biochem J, Vol. 356, No. Pt 1. (2001), pp. 1-10.
    by VK Rakyan, J Preis, HD Morgan, E Whitelaw
    posted to methylation mammalsgenetics intercellular imprinting govt genomic genetic gene expression dosage dna compensation chromatinmetabolism animals and genome-chromatin support signaling research repressor regulation proteins peptides non-us models mice by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:44 as **** along with 1 group ProkaryoteInterestGroup
  • Gene targeting in plants: fingers on the move.
    Trends Plant Sci, Vol. 11, No. 4. (2006), pp. 159-61.
    by S Kumar, GC Allen, WF Thompson
    posted to genome-chromatin zinc us targetingmethods support research repair recombination plantsgenetics plant non-us non-phs govt genome genetic gene fingersphysiology endodeoxyribonucleaseschemistrymetabolism dna disassembly chromatin assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as **** along with 1 group ProkaryoteInterestGroup
  • Silencing of transposable elements in plants.
    Trends Plant Sci, Vol. 6, No. 11. (2001), pp. 527-34.
    by H Okamoto, H Hirochika
    posted to genome-chromatin transposable transcription support silencing rna research regulation processing post-transcriptional plantsgenetics plant non-us mammalsgenetics govt genetic gene expression elementsgenetics elegansgeneticsmetabolism drosophilagenetics dna deletion caenorhabditis arabidopsisgeneticsmetabolism animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as **** along with 1 group ProkaryoteInterestGroup
  • The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome.
    Plant J, Vol. 40, No. 5. (2004), pp. 660-71.
    by M Duroux, A Houben, K Ruzicka, J Friml, KD Grasser
    posted to genome-chromatin transcription support research regulation proteinsmetabolism plant nucleusmetabolism non-us interphasephysiology govt genetic gene factorsmetabolism expression differentiation chromatinmetabolism cell arabidopsiscytologygeneticsmetabolism arabidopsis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as **** along with 1 group ProkaryoteInterestGroup
  • Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana.
    J Biol Chem, Vol. 281, No. 14. (2006), pp. 9560-8.
    by N Schonrock, V Exner, A Probst, W Gruissem, L Hennig
    posted to genome-chromatin transcription support silencing research proteinsbiosynthesisgenetics proteins profiling non-us non-histonebiosynthesisgenetics mutational molecular heterochromatinmetabolism govt genetic gene expression dna-binding dna disassemblygenetics chromosomal chromatin chaperones assembly arabidopsisgenetics and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:39 as **** along with 1 group ProkaryoteInterestGroup
  • [Transcriptome and non-coding RNAs: so many mRNA-like non-coding RNAs are really functional?]
    Tanpakushitsu Kakusan Koso, Vol. 49, No. 16. (2004), pp. 2521-8.
    by A Kanai
    posted to genome-chromatin untranslatedclassificationgeneticsphysiology transcription sequence rna reading open messenger imprintinggenetics humans genomic geneticgenetics genetic frames dosage dna disassemblygenetics computational complementary compensation chromatin biology assembly antisense animals and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:36 as **** along with 1 group ProkaryoteInterestGroup
  • Poly(ADP-ribosyl)ated chromatin domains: access granted.
    J Cell Sci, Vol. 117, No. Pt 6. (2004), pp. 815-25.
    by M Rouleau, RA Aubin, GG Poirier
    posted to genome-chromatin transcription support ribosemetabolism research proteins polymerases polyadp-ribose poly nucleusmetabolism nucleic non-us non-histonemetabolism nadmetabolism humans histonesmetabolism govt genetic dnametabolism disassemblyphysiology diphosphate conformation chromosomesmetabolism chromosomal chromatinmetabolism chromatin cell assembly apoptosisphysiology animals and adenosine acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:35 as **** along with 1 group ProkaryoteInterestGroup
  • Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins.
    J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35.
    by T Ichimura, S Watanabe, Y Sakamoto, T Aoto, N Fujita, M Nakao
    posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as **** along with 1 group ProkaryoteInterestGroup
  • Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair.
    Genes Dev, Vol. 19, No. 14. (2005), pp. 1656-61.
    by B Chai, J Huang, BR Cairns, BC Laurent
    posted to genome-chromatin us triphosphatemetabolism transcription temperature support saccharomyces research repair recombination proteinsgeneticsmetabolism phs nih mutation kinetics govt genetic genes fungal factorsgeneticsmetabolism extramural dna-binding dna disassembly chromatin cerevisiaegeneticsmetabolism cerevisiae assembly and adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as **** along with 1 group ProkaryoteInterestGroup
  • Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila.
    Methods Mol Biol, Vol. 287 (2004), pp. 151-68.
    by MD Garfinkel, VE Sollars, X Lu, DM Ruden
    posted to genome-chromatin us trait testsmethods techniques support selection research quantitative proteinsantagonists precipitin phs non-us molecular methylation male loci inhibitors hydroxamic hsp90 histonesanalysismetabolism heat-shock govt genetics genetic female epigenesis drosophilagenetics dna disassembly chromatin biologymethods assembly animals and acidspharmacology acetylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:26 as **** along with 1 group ProkaryoteInterestGroup
  • Identification of SATB2 as the cleft palate gene on 2q32-q33.
    Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501.
    by DR Fitzpatrick, IM Carr, L Mclaren, JP Leek, P Wightman, K Williamson, P Gautier, N Mcgill, C Hayward, H Firth, AF Markham, JA Fantes, DT Bonthron
    posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as **** along with 1 group ProkaryoteInterestGroup
  • ATP-dependent chromatin remodeling and DNA double-strand break repair.
    Cell Cycle, Vol. 4, No. 8. (2005), pp. 1011-4.
    by H van Attikum, SM Gasser
    posted to adenosine genome-chromatin triphosphatechemistry transcription support saccharomyces research repair recombination proteinschemistry phosphorylation nucleosomeschemistrymetabolism non-us models histoneschemistry govt genetic factorschemistry dnachemistry dna-binding dna disassembly damage chromatinchemistry chromatin cerevisiae biological assembly arabidopsismetabolism and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as **** along with 1 group ProkaryoteInterestGroup
  • The role of mammalian DNA methyltransferases in the regulation of gene expression.
    Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47.
    by Turek J Plewa, PP Jagodzinski
    posted to genome-chromatin transcription support research regulation protein non-us isoforms humans govt genetic gene expression epigenesis dna disassembly cytosine-5--methyltransferasechemistrymetabolism chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as **** along with 1 group ProkaryoteInterestGroup
  • Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis.
    Curr Biol, Vol. 16, No. 5. (2006), pp. 486-92.
    by PE Jullien, A Katz, M Oliva, N Ohad, F Berger
    posted to genome-chromatin us support silencing seedsgeneticsmetabolism research repressor regulation proteinsmetabolismphysiology proteinsgeneticsmetabolism protein processing post-translational plant non-us non-phs models methylation imprinting immunoprecipitation histonesmetabolism govt genomic genetic gene expression disassembly development chromatin assembly arabidopsisembryologygeneticsgrowth arabidopsis and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:11 as **** along with 1 group ProkaryoteInterestGroup
  • RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription.
    Nature, Vol. 435, No. 7046. (2005), pp. 1275-9.
    by V Schramke, DM Sheedy, AM Denli, C Bonila, K Ekwall, GJ Hannon, RC Allshire
    posted to genome-chromatin viral transcription support small schizosaccharomycesenzymologygenetics schizosaccharomyces rna ribonucleasesmetabolism research regulation proteinsmetabolism protein pombe polymerasesmetabolism polymerase non-us interferinggeneticsmetabolism interference iichemistrymetabolism govt genetic gene fungal expression dna-directed disassembly chromatingeneticsmetabolism chromatin centromeregeneticsmetabolism binding assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:10 as **** along with 1 group ProkaryoteInterestGroup
  • A non-EST-based method for exon-skipping prediction
    Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623.
    by R Sorek, R Shemesh, Y Cohen, O Basechess, G Ast, R Shamir
    posted to 0500 20040924 acid alternative animals biologymethods comparative computational databases exons expressed genetic genome human humans introns messengergenetics mice models nucleic rna sequence splicing study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379.
    by S Kikuchi, K Satoh, T Nagata, N Kawagashira, K Doi, N Kishimoto, J Yazaki, M Ishikawa, H Yamada, H Ooka, I Hotta, K Kojima, T Namiki, E Ohneda, W Yahagi, K Suzuki, CJ Li, K Ohtsuki, T Shishiki, Y Otomo, K Murakami, Y Iida, S Sugano, T Fujimura, Y Suzuki, Y Tsunoda, T Kurosaki, T Kodama, H Masuda, M Kobayashi, Q Xie, M Lu, R Narikawa, A Sugiyama, K Mizuno, S Yokomizo, J Niikura, R Ikeda, J Ishibiki, M Kawamata, A Yoshimura, J Miura, T Kusumegi, M Oka, R Ryu, M Ueda, K Matsubara, J Kawai, P Carninci, J Adachi, K Aizawa, T Arakawa, S Fukuda, A Hara, W Hashizume, N Hayatsu, K Imotani, Y Ishii, M Itoh, I Kagawa, S Kondo, H Konno, A Miyazaki, N Osato, Y Ota, R Saito, D Sasaki, K Sato, K Shibata, A Shinagawa, T Shiraki, M Yoshino, Y Hayashizaki, A Yasunishi
    posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as **
  • Integrative annotation of 21,037 human genes validated by full-length cDNA clones
    PLoS Biol, Vol. 2, No. 6. (Jun 2004)
    by T Imanishi, T Itoh, Y Suzuki, C O'Donovan, S Fukuchi, KO Koyanagi, RA Barrero, T Tamura, Yamaguchi Y Kabata, M Tanino, K Yura, S Miyazaki, K Ikeo, K Homma, A Kasprzyk, T Nishikawa, M Hirakawa, Thierry J Mieg, Thierry D Mieg, J Ashurst, L Jia, M Nakao, MA Thomas, N Mulder, Y Karavidopoulou, L Jin, S Kim, T Yasuda, B Lenhard, E Eveno, Y Suzuki, C Yamasaki, J Takeda, C Gough, P Hilton, Y Fujii, H Sakai, S Tanaka, C Amid, M Bellgard, Bonaldo F Mde, H Bono, SK Bromberg, AJ Brookes, E Bruford, P Carninci, C Chelala, C Couillault, SJ de Souza, MA Debily, MD Devignes, I Dubchak, T Endo, A Estreicher, E Eyras, Fukami K Kobayashi, GR Gopinath, E Graudens, Y Hahn, M Han, ZG Han, K Hanada, H Hanaoka, E Harada, K Hashimoto, U Hinz, M Hirai, T Hishiki, I Hopkinson, S Imbeaud, H Inoko, A Kanapin, Y Kaneko, T Kasukawa, J Kelso, P Kersey, R Kikuno, K Kimura, B Korn, V Kuryshev, I Makalowska, T Makino, S Mano, Mariage R Samson, J Mashima, H Matsuda, HW Mewes, S Minoshima, K Nagai, H Nagasaki, N Nagata, R Nigam, O Ogasawara, O Ohara, M Ohtsubo, N Okada, T Okido, S Oota, M Ota, T Ota, T Otsuki, Piatier D Tonneau, A Poustka, SX Ren, N Saitou, K Sakai, S Sakamoto, R Sakate, I Schupp, F Servant, S Sherry, R Shiba, N Shimizu, M Shimoyama, AJ Simpson, B Soares, C Steward, M Suwa, M Suzuki, A Takahashi, G Tamiya, H Tanaka, T Taylor, JD Terwilliger, P Unneberg, V Veeramachaneni, S Watanabe, L Wilming, N Yasuda, HS Yoo, M Stodolsky, W Makalowski, M Go, K Nakai, T Takagi, M Kanehisa, Y Sakaki, J Quackenbush, Y Okazaki, Y Hayashizaki, W Hide, R Chakraborty, K Nishikawa, H Sugawara, Y Tateno, Z Chen, M Oishi, P Tonellato, R Apweiler, K Okubo, L Wagner, S Wiemann, RL Strausberg, T Isogai, C Auffray, N Nomura, T Gojobori, S Sugano
    posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as **
  • Genome-wide assembly and analysis of alternative transcripts in mouse
    Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754.
    by AA Sharov, DB Dudekula, MS Ko
    posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as **
  • C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression
    Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41.
    by J Reboul, P Vaglio, JF Rual, P Lamesch, M Martinez, CM Armstrong, S Li, L Jacotot, N Bertin, R Janky, T Moore, Hudson, JL Hartley, MA Brasch, J Vandenhaute, S Boulton, GA Endress, S Jenna, E Chevet, V Papasotiropoulos, PP Tolias, J Ptacek, M Snyder, R Huang, MR Chance, H Lee, Doucette L Stamm, DE Hill, M Vidal
    posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as **
  • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
    Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900.
    by Z Kan, EC Rouchka, WR Gish, DJ States
    posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • In silico screening for tumour-specific expressed sequences in human genome
    FEBS Lett, Vol. 508, No. 1. (Nov 2001), pp. 143-148.
    by AV Baranova, AV Lobashev, DV Ivanov, LL Krukovskaya, NK Yankovsky, AP Kozlov
    posted to 1001 20020105 databases expressed expression gene genes genetic genome human humans library neoplasm neoplasmsgenetics profilingmethods sequence structural tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • How prevalent is functional alternative splicing in the human genome?
    Trends Genet, Vol. 20, No. 2. (Feb 2004), pp. 68-71.
    by R Sorek, R Shamir, G Ast
    posted to 0500 20040310 alternative comparative evolution exons expressed genetic genome human humans introns models molecular rna sequence sites splice splicinggenetics study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Alternative splicing of conserved exons is frequently species-specific in human and mouse
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77.
    by Q Pan, MA Bakowski, Q Morris, W Zhang, BJ Frey, TR Hughes, BJ Blencowe
    posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Stochastic models inspired by hybridization theory for short oligonucleotide arrays
    J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893.
    by Z Wu, RA Irizarry
    posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as **
  • The transcriptional activity of human Chromosome 22
    Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540.
    by JL Rinn, G Euskirchen, P Bertone, R Martone, NM Luscombe, S Hartman, PM Harrison, FK Nelson, P Miller, M Gerstein, S Weissman, M Snyder
    posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as **
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102.
    by JM Johnson, S Edwards, D Shoemaker, EE Schadt
    posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as **
  • Empirical analysis of transcriptional activity in the Arabidopsis genome
    Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846.
    by K Yamada, J Lim, JM Dale, H Chen, P Shinn, CJ Palm, AM Southwick, HC Wu, C Kim, M Nguyen, P Pham, R Cheuk, Karlin G Newmann, SX Liu, B Lam, H Sakano, T Wu, G Yu, M Miranda, HL Quach, M Tripp, CH Chang, JM Lee, M Toriumi, MM Chan, CC Tang, CS Onodera, JM Deng, K Akiyama, Y Ansari, T Arakawa, J Banh, F Banno, L Bowser, S Brooks, P Carninci, Q Chao, N Choy, A Enju, AD Goldsmith, M Gurjal, NF Hansen, Y Hayashizaki, Johnson C Hopson, VW Hsuan, K Iida, M Karnes, S Khan, E Koesema, J Ishida, PX Jiang, T Jones, J Kawai, A Kamiya, C Meyers, M Nakajima, M Narusaka, M Seki, T Sakurai, M Satou, R Tamse, M Vaysberg, EK Wallender, C Wong, Y Yamamura, S Yuan, K Shinozaki, RW Davis, A Theologis, JR Ecker
    posted to 0500 20031210 acid analysis arabidopsisgenetics array biology