Group: Bioinformatics - with tag govt [169 articles] Export

Recent papers posted by members of the Bioinformatics group with tag govt

	In vivo analysis of the model tyrosine aminotransferase gene reveals multiple sequential steps in glucocorticoid receptor action. [My Copy] Oncogene, Vol. 20, No. 24. (2001), pp. 3028-38. by T. Grange, L. Cappabianca, M. Flavin, H. Sassi, H. Thomassin posted to genome-chromatin tyrosine transaminasegeneticsmetabolism trans-activation support research receptors non-us models humans govt glucocorticoidphysiology genetics chromatingeneticsmetabolism biological animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:49 as along with 1 group ProkaryoteInterestGroup
	Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. [My Copy] Mol Cell, Vol. 15, No. 4. (2004), pp. 595-605. by S. A. Sarraf, I. Stancheva posted to macromolecular lysinemetabolism islands interferingmetabolism humans histonesmetabolism hela govt genetics gene factors dna-binding dna disassembly cpg chromatin cells carrier biological assembly and genome-chromatin two-hybrid transcription techniques system support substances small silencing s rna research replication regions proteinsmetabolism proteinsgeneticsmetabolism proteinsgenetics protein promoter phase non-us models methyltransferasesmetabolism methylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:48 as along with 1 group ProkaryoteInterestGroup
	Genomic DNA methylation: the mark and its mediators. [My Copy] Trends Biochem Sci, Vol. 31, No. 2. (2006), pp. 89-97. by R. J. Klose, A. P. Bird posted to genome-chromatin transcription syndromephysiopathology support silencingphysiology rett research regulation proteinsmetabolismphysiology protein non-us neoplasmsgenetics methylationdrug methyl-cpg-binding islandsphysiology intestinal humans govt geneticphysiology geneticdrug gene factorsphysiology expression epigenesis effectsphysiology effects dna-binding dna cytosine-5--methyltransferasemetabolism cpg animals 2genetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as along with 1 group ProkaryoteInterestGroup
	Cooperative interactions between epigenetic modifications and their function in the regulation of chromosome architecture. [My Copy] Bioessays, Vol. 25, No. 8. (2003), pp. 792-7. by F. Weissmann, F. Lyko posted to genome-chromatin support research non-us models methylation humans govt genetic epigenesis dna chromosomesgenetics animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as along with 1 group ProkaryoteInterestGroup
	Chromatin organization during spermiogenesis in Octopus vulgaris. I: Morphological structures. [My Copy] Mol Reprod Dev, Vol. 68, No. 2. (2004), pp. 223-31. by E. Ribes, Gimenez P. Bonafe, Martinez F. Soler, et al.A. Gonzalez, N. Saperas, H. E. Kasinsky, M. Chiva posted to genome-chromatin support spermatogenesisphysiology research octopodiformesphysiology nuclear non-us matrixmetabolism male govt disassemblyphysiology chromatinphysiology chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:45 as along with 1 group ProkaryoteInterestGroup
	The marks, mechanisms and memory of epigenetic states in mammals. [My Copy] Biochem J, Vol. 356, No. Pt 1. (2001), pp. 1-10. by V. K. Rakyan, J. Preis, H. D. Morgan, E. Whitelaw posted to methylation mammalsgenetics intercellular imprinting govt genomic genetic gene expression dosage dna compensation chromatinmetabolism animals and genome-chromatin support signaling research repressor regulation proteins peptides non-us models mice by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:44 as along with 1 group ProkaryoteInterestGroup
	Gene targeting in plants: fingers on the move. [My Copy] Trends Plant Sci, Vol. 11, No. 4. (2006), pp. 159-61. by S. Kumar, G. C. Allen, W. F. Thompson posted to genome-chromatin zinc us targetingmethods support research repair recombination plantsgenetics plant non-us non-phs govt genome genetic gene fingersphysiology endodeoxyribonucleaseschemistrymetabolism dna disassembly chromatin assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Nucleosome assembly protein-1 is a linker histone chaperone in Xenopus eggs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 23. (2005), pp. 8210-5. by K. Shintomi, M. Iwabuchi, H. Saeki, K. Ura, T. Kishimoto, K. Ohsumi posted to govt female extracts disassembly data cycle chromatin chaperonesmetabolism cell assembly animals and amino acid genome-chromatin xenopusmetabolism support spermatozoametabolism sequence research proteinsgeneticsmetabolism proteins oocytesmetabolism nucleosomeschemistrymetabolism nuclear non-us molecular male histonesmetabolism by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Silencing of transposable elements in plants. [My Copy] Trends Plant Sci, Vol. 6, No. 11. (2001), pp. 527-34. by H. Okamoto, H. Hirochika posted to genome-chromatin transposable transcription support silencing rna research regulation processing post-transcriptional plantsgenetics plant non-us mammalsgenetics govt genetic gene expression elementsgenetics elegansgeneticsmetabolism drosophilagenetics dna deletion caenorhabditis arabidopsisgeneticsmetabolism animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	The radioresistance kinase TLK1B protects the cells by promoting repair of double strand breaks. [My Copy] BMC Mol Biol, Vol. 6 (2005) by Sunavala G. Dossabhoy, S. K. Balakrishnan, S. Sen, S. Nuthalapaty, A. De Benedetti posted to genome-chromatin transfection tolerance support research repair radiation protein-serine-threonine plasmids phosphorylation non-us line kinasesgeneticsphysiology ionizing humans histonesmetabolism govt dna disassembly damage chromatin cell assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome. [My Copy] Plant J, Vol. 40, No. 5. (2004), pp. 660-71. by M. Duroux, A. Houben, K. Ruzicka, J. Friml, K. D. Grasser posted to genome-chromatin transcription support research regulation proteinsmetabolism plant nucleusmetabolism non-us interphasephysiology govt genetic gene factorsmetabolism expression differentiation chromatinmetabolism cell arabidopsiscytologygeneticsmetabolism arabidopsis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis. [My Copy] Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5. by F. Magdinier, S. G. D'Estaing, C. Peinado, et al.B. Demirci, C. Berthet, J. F. Guerin, R. Dante posted to genome-chromatin tumor suppressor support spermatozoametabolism research regulation protein p53genetics oocytesmetabolism non-us mice methylation male kinetics islandsgenetics humans govt genes gene fetal female expression embryonic dna developmentgenetics developmental cpg brca1 blastocystmetabolism animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Solution structure of the SWIRM domain of human histone demethylase LSD1. [My Copy] Structure, Vol. 14, No. 3. (2006), pp. 457-68. by N. Tochio, T. Umehara, S. Koshiba, et al.M. Inoue, T. Yabuki, M. Aoki, E. Seki, S. Watanabe, Y. Tomo, M. Hanada, M. Ikari, M. Sato, T. Terada, T. Nagase, O. Ohara, M. Shirouzu, A. Tanaka, T. Kigawa, S. Yokoyama posted to specificity sequence research proteins protein oxidoreductases non-us n-demethylatingchemistrygenetics motifs molecular models histonesanalysismetabolism helix-turn-helix govt factorsanalysischemistry factors dna-binding disassembly data conformation chromatin assembly and amino acid genome-chromatin transcription time tertiary support substrate structure by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as along with 1 group ProkaryoteInterestGroup
	A heterochromatin barrier partitions the fission yeast centromere into discrete chromatin domains. [My Copy] Curr Biol, Vol. 16, No. 2. (2006), pp. 119-29. by K. C. Scott, S. L. Merrett, H. F. Willard posted to genome-chromatin transfer support site-directed silencing sequence segregationgeneticsphysiology schizosaccharomycescytologygeneticsgrowth rna research regulation non-us mutagenesis molecular meiosisphysiology heterochromatinchemistrygeneticsphysiology govt gene fungal expression disassembly development deletion data chromosome chromatin centromerechemistrygenetics base assembly and alagenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:40 as along with 1 group ProkaryoteInterestGroup
	Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. [My Copy] J Biol Chem, Vol. 281, No. 14. (2006), pp. 9560-8. by N. Schonrock, V. Exner, A. Probst, W. Gruissem, L. Hennig posted to genome-chromatin transcription support silencing research proteinsbiosynthesisgenetics proteins profiling non-us non-histonebiosynthesisgenetics mutational molecular heterochromatinmetabolism govt genetic gene expression dna-binding dna disassemblygenetics chromosomal chromatin chaperones assembly arabidopsisgenetics and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:39 as along with 1 group ProkaryoteInterestGroup
	Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements. [My Copy] Mol Cell Biol, Vol. 25, No. 7. (2005), pp. 2698-707. by A. Dhasarathy, M. P. Kladde posted to genome-chromatin us transcription trans-activatorsmetabolism time support sites saccharomyces research regulation regions proteinsmetabolism proteinsgeneticsmetabolism protein promoter phs phosphatespharmacology nuclear non-us kinasesmetabolism immunoprecipitation histone govt geneticsgenetics gene fungal factorsmetabolism factors expression effectsenzymologygenetics dna-binding disassembly chromatingeneticsmetabolism chromatin cerevisiaedrug cerevisiae binding assembly and acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:38 as along with 1 group ProkaryoteInterestGroup
	Poly(ADP-ribosyl)ated chromatin domains: access granted. [My Copy] J Cell Sci, Vol. 117, No. Pt 6. (2004), pp. 815-25. by M. Rouleau, R. A. Aubin, G. G. Poirier posted to genome-chromatin transcription support ribosemetabolism research proteins polymerases polyadp-ribose poly nucleusmetabolism nucleic non-us non-histonemetabolism nadmetabolism humans histonesmetabolism govt genetic dnametabolism disassemblyphysiology diphosphate conformation chromosomesmetabolism chromosomal chromatinmetabolism chromatin cell assembly apoptosisphysiology animals and adenosine acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:35 as along with 1 group ProkaryoteInterestGroup
	Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins. [My Copy] J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35. by T. Ichimura, S. Watanabe, Y. Sakamoto, T. Aoto, N. Fujita, M. Nakao posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. [My Copy] Genes Dev, Vol. 19, No. 14. (2005), pp. 1656-61. by B. Chai, J. Huang, B. R. Cairns, B. C. Laurent posted to genome-chromatin us triphosphatemetabolism transcription temperature support saccharomyces research repair recombination proteinsgeneticsmetabolism phs nih mutation kinetics govt genetic genes fungal factorsgeneticsmetabolism extramural dna-binding dna disassembly chromatin cerevisiaegeneticsmetabolism cerevisiae assembly and adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	Role of transposable elements in heterochromatin and epigenetic control. [My Copy] Nature, Vol. 430, No. 6998. (2004), pp. 471-6. by Z. Lippman, A. V. Gendrel, M. Black, et al.M. W. Vaughn, N. Dedhia, W. R. Mccombie, K. Lavine, V. Mittal, B. May, K. D. Kasschau, J. C. Carrington, R. W. Doerge, V. Colot, R. Martienssen posted to sequencesgenetics sequence rna research repeat regulation proteinsgeneticsmetabolism proteinsgenetics plantgenetics plant phs oligonucleotide non-us non-phs methylation interferinggeneticsmetabolism imprinting homeodomain heterochromatingenetics govt genomic geneticgenetics gene factorsgeneticsmetabolism expression epigenesis elementsgenetics dna-binding dna cytosine-5--methyltransferasemetabolism cluster chromosomes array arabidopsisgenetics arabidopsis analysis genome-chromatin us transposable transcription tandem support small by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	DNA methylation in animal development. [My Copy] Semin Cell Dev Biol, Vol. 14, No. 1. (2003), pp. 53-65. by R. R. Meehan posted to genome-chromatin support research regulation proteinsphysiology non-us modification methylation methylasesgenetics imprinting govt genomic gene expression dna-binding dna developmentalgenetics chromatinmetabolismphysiology animals by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	Remodelling chromatin on a global scale: a novel protective function of p53. [My Copy] Carcinogenesis, Vol. 25, No. 9. (2004), pp. 1551-7. by S. J. Allison, J. Milner posted to genome-chromatin ultraviolet tumor transcription suppressor support research repairphysiology rays protein p53physiology non-us humans histonesmetabolism govt geneticradiation effects dnaphysiologyradiation dna damagegenetics chromatinphysiologyradiation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:30 as along with 1 group ProkaryoteInterestGroup
	Transition nuclear proteins are required for normal chromatin condensation and functional sperm development. [My Copy] Genesis, Vol. 38, No. 4. (2004), pp. 200-13. by M. Zhao, C. R. Shirley, S. Hayashi, et al.L. Marcon, B. Mohapatra, R. Suganuma, R. R. Behringer, G. Boissonneault, R. Yanagimachi, M. L. Meistrich posted to genome fluorescence disassembly developmentmetabolismpathology chromosomal chromatingeneticsmetabolism chromatin assembly animals and agingphysiology genome-chromatin us support spermatozoacytologygrowth spermatogenesis research proteins protaminesmetabolism phs non-us non-histonedeficiencygeneticsmetabolism mutationgenetics microscopy mice malegeneticspathology male knockout infertility histonesmetabolism govt by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:29 as along with 1 group ProkaryoteInterestGroup
	H2AX: tailoring histone H2A for chromatin-dependent genomic integrity. [My Copy] Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15. by A. Li, Eirin J. M. Lopez, J. Ausio posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as along with 1 group ProkaryoteInterestGroup
	Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila. [My Copy] Methods Mol Biol, Vol. 287 (2004), pp. 151-68. by M. D. Garfinkel, V. E. Sollars, X. Lu, D. M. Ruden posted to genome-chromatin us trait testsmethods techniques support selection research quantitative proteinsantagonists precipitin phs non-us molecular methylation male loci inhibitors hydroxamic hsp90 histonesanalysismetabolism heat-shock govt genetics genetic female epigenesis drosophilagenetics dna disassembly chromatin biologymethods assembly animals and acidspharmacology acetylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:26 as along with 1 group ProkaryoteInterestGroup
	FGF2-induced chromatin remodeling regulates CNTF-mediated gene expression and astrocyte differentiation. [My Copy] Nat Neurosci, Vol. 7, No. 3. (2004), pp. 229-35. by M. R. Song, A. Ghosh posted to genome-chromatin us transductiondrug transcription trans-activatorsdrug support stem stat1 signal research regulation regions rats proteinsdrug proteindrug promoter phs non-us neurotrophic methylationdrug lysinemetabolism histonesdrug growth govt glial geneticsdrug gene fibroblast fibrillary fetus factorsdrug factormetabolismpharmacology factor expression effectsmetabolism effectsgeneticsmetabolism effectsgenetics effects dna-binding disassemblydrug differentiationdrug developmentaldrug cultured cortexcytologyembryologymetabolism ciliary chromatin cerebral cellscytologydrug cells cell astrocytescytologydrug assembly animals and acidic 2metabolismpharmacology by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:24 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin. [My Copy] J Cell Biochem, Vol. 91, No. 6. (2004), pp. 1087-98. by S. Sif posted to non-us neoplasmsmetabolism humans govt geneticphysiology gene expression drosophila dnametabolism divisionphysiology disassemblyphysiology chromatin cerevisiae cell assembly animals and adenosine genome-chromatin us triphosphatemetabolism transcription support saccharomyces research regulation proteinsmetabolism phs nucleosomesmetabolism nuclear by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:23 as along with 1 group ProkaryoteInterestGroup
	TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. [My Copy] Genes Dev, Vol. 19, No. 8. (2005), pp. 955-64. by N. Bachman, M. E. Gelbart, T. Tsukiyama, J. D. Boeke posted to genome-chromatin us transfergenetics transcription tfiiibgenetics support subunitsgenetics study specificity species saccharomyces rna retroelementsgenetics research recombination reaction proteinsgenetics protein primers polymerase phs nucleosomesgeneticsmetabolism nih immunoprecipitation govt geneticgenetics factorsgenetics factor extramural dna disassemblygenetics comparative chromatin chain cerevisiaegenetics cerevisiae assembly and adenosinetriphosphatasegenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:22 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent chromatin remodeling and DNA double-strand break repair. [My Copy] Cell Cycle, Vol. 4, No. 8. (2005), pp. 1011-4. by H. van Attikum, S. M. Gasser posted to adenosine genome-chromatin triphosphatechemistry transcription support saccharomyces research repair recombination proteinschemistry phosphorylation nucleosomeschemistrymetabolism non-us models histoneschemistry govt genetic factorschemistry dnachemistry dna-binding dna disassembly damage chromatinchemistry chromatin cerevisiae biological assembly arabidopsismetabolism and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	The role of mammalian DNA methyltransferases in the regulation of gene expression. [My Copy] Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47. by Turek J. Plewa, P. P. Jagodzinski posted to genome-chromatin transcription support research regulation protein non-us isoforms humans govt genetic gene expression epigenesis dna disassembly cytosine-5--methyltransferasechemistrymetabolism chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	Chromatin remodeling and the maintenance of genome integrity. [My Copy] Biochim Biophys Acta, Vol. 1677, No. 1-3. (2004), pp. 158-64. by S. Allard, J. Y. Masson, J. Cote posted to genome-chromatin variation u1 triphosphatemetabolism support substances small rna-binding ribonucleoprotein research repairgenetics proteins nucleargeneticsmetabolism non-us macromolecular humans histonesgeneticsmetabolism histone govt genome genetics drosophila dna disassembly chromatin assembly animals and adenosine acetyltransferasesgeneticsmetabolism acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:12 as along with 1 group ProkaryoteInterestGroup
	Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. [My Copy] Curr Biol, Vol. 16, No. 5. (2006), pp. 486-92. by P. E. Jullien, A. Katz, M. Oliva, N. Ohad, F. Berger posted to genome-chromatin us support silencing seedsgeneticsmetabolism research repressor regulation proteinsmetabolismphysiology proteinsgeneticsmetabolism protein processing post-translational plant non-us non-phs models methylation imprinting immunoprecipitation histonesmetabolism govt genomic genetic gene expression disassembly development chromatin assembly arabidopsisembryologygeneticsgrowth arabidopsis and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:11 as along with 1 group ProkaryoteInterestGroup
	RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription. [My Copy] Nature, Vol. 435, No. 7046. (2005), pp. 1275-9. by V. Schramke, D. M. Sheedy, A. M. Denli, et al.C. Bonila, K. Ekwall, G. J. Hannon, R. C. Allshire posted to genome-chromatin viral transcription support small schizosaccharomycesenzymologygenetics schizosaccharomyces rna ribonucleasesmetabolism research regulation proteinsmetabolism protein pombe polymerasesmetabolism polymerase non-us interferinggeneticsmetabolism interference iichemistrymetabolism govt genetic gene fungal expression dna-directed disassembly chromatingeneticsmetabolism chromatin centromeregeneticsmetabolism binding assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:10 as along with 1 group ProkaryoteInterestGroup
	Accurate identification of alternatively spliced exons using support vector machine [My Copy] Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 897-901. by G. Dror, R. Sorek, R. Shamir posted to 0900 20050713 algorithms alignmentmethods alternative analysis animals artificial automatedmethods chromosome comparative conserved dnamethods evolution exonsgenetics govt humans intelligence mappingmethods mice molecular non-us pattern recognition research sequence sequencegenetics software splicinggenetics study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences [My Copy] Nucleic Acids Res, Vol. 32, No. 17. (2004), pp. 5096-5103. by K. Iida, M. Seki, T. Sakurai, et al.M. Satou, K. Akiyama, T. Toyoda, A. Konagaya, K. Shinozaki posted to 0900 20041013 alternative arabidopsisgeneticsgrowth base chromosome cold complementarychemistry developmentmetabolism dna genome govt mapping messengermetabolism non-us plant plantmetabolism precursorsmetabolism research rna sequence splicing support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Integrative annotation of 21,037 human genes validated by full-length cDNA clones [My Copy] PLoS Biol, Vol. 2, No. 6. (Jun 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Yamaguchi Y. Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, Thierry J. Mieg, Thierry D. Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, Bonaldo F. Mde, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, Fukami K. Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, Mariage R. Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, Piatier D. Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as
	Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes [My Copy] RNA, Vol. 10, No. 7. (Jul 2004), pp. 1005-1018. by H. Itoh, T. Washio, M. Tomita posted to 0500 20040824 acid alternative animals base complementarygenetics conserved data dna drosophila evolution exonsgenetics govt humans intronsgenetics melanogastergenetics mice molecular non-us nucleic oryza regulatory research sativagenetics sequence sequences species specificity splicinggenetics support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression [My Copy] Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41. by J. Reboul, P. Vaglio, J. F. Rual, et al.P. Lamesch, M. Martinez, C. M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, T. Moore, Hudson, J. L. Hartley, M. A. Brasch, J. Vandenhaute, S. Boulton, G. A. Endress, S. Jenna, E. Chevet, V. Papasotiropoulos, P. P. Tolias, J. Ptacek, M. Snyder, R. Huang, M. R. Chance, H. Lee, Doucette L. Stamm, D. E. Hill, M. Vidal posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Gene structure prediction and alternative splicing analysis using genomically aligned ESTs [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900. by Z. Kan, E. C. Rouchka, W. R. Gish, D. J. States posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Frequent alternative splicing of human genes [My Copy] Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293. by A. A. Mironov, J. W. Fickett, M. S. Gelfand posted to 0001 19991230 5 alignment alternative base contig data databases exonsgenetics expressed factual govt humans intronsgenetics isoformsgenetics mappingmethods molecular non-phs non-us protein regionsgenetics research sequence sequencegenetics splicing support tags untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing of conserved exons is frequently species-specific in human and mouse [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77. by Q. Pan, M. A. Bakowski, Q. Morris, et al.W. Zhang, B. J. Frey, T. R. Hughes, B. J. Blencowe posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	The transcriptional activity of human Chromosome 22 [My Copy] Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540. by J. L. Rinn, G. Euskirchen, P. Bertone, et al.R. Martone, N. M. Luscombe, S. Hartman, P. M. Harrison, F. K. Nelson, P. Miller, M. Gerstein, S. Weissman, M. Snyder posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as
	Complete sequencing and characterization of 21,243 full-length human cDNAs [My Copy] Nat Genet, Vol. 36, No. 1. (Jan 2004), pp. 40-45. by T. Ota, Y. Suzuki, T. Nishikawa, et al.T. Otsuki, T. Sugiyama, R. Irie, A. Wakamatsu, K. Hayashi, H. Sato, K. Nagai, K. Kimura, H. Makita, M. Sekine, M. Obayashi, T. Nishi, T. Shibahara, T. Tanaka, S. Ishii, J. Yamamoto, K. Saito, Y. Kawai, Y. Isono, Y. Nakamura, K. Nagahari, K. Murakami, T. Yasuda, T. Iwayanagi, M. Wagatsuma, A. Shiratori, H. Sudo, T. Hosoiri, Y. Kaku, H. Kodaira, H. Kondo, M. Sugawara, M. Takahashi, K. Kanda, T. Yokoi, T. Furuya, E. Kikkawa, Y. Omura, K. Abe, K. Kamihara, N. Katsuta, K. Sato, M. Tanikawa, M. Yamazaki, K. Ninomiya, T. Ishibashi, H. Yamashita, K. Murakawa, K. Fujimori, H. Tanai, M. Kimata, M. Watanabe, S. Hiraoka, Y. Chiba, S. Ishida, Y. Ono, S. Takiguchi, S. Watanabe, M. Yosida, T. Hotuta, J. Kusano, K. Kanehori, Takahashi A. Fujii, H. Hara, T. O. Tanase, Y. Nomura, S. Togiya, F. Komai, R. Hara, K. Takeuchi, M. Arita, N. Imose, K. Musashino, H. Yuuki, A. Oshima, N. Sasaki, S. Aotsuka, Y. Yoshikawa, H. Matsunawa, T. Ichihara, N. Shiohata, S. Sano, S. Moriya, H. Momiyama, N. Satoh, S. Takami, Y. Terashima, O. Suzuki, S. Nakagawa, A. Senoh, H. Mizoguchi, Y. Goto, F. Shimizu, H. Wakebe, H. Hishigaki, T. Watanabe, A. Sugiyama, M. Takemoto, B. Kawakami, M. Yamazaki, K. Watanabe, A. Kumagai, S. Itakura, Y. Fukuzumi, Y. Fujimori, M. Komiyama, H. Tashiro, A. Tanigami, T. Fujiwara, T. Ono, K. Yamada, Y. Fujii, K. Ozaki, M. Hirao, Y. Ohmori, A. Kawabata, T. Hikiji, N. Kobatake, H. Inagaki, Y. Ikema, S. Okamoto, R. Okitani, T. Kawakami, S. Noguchi, T. Itoh, K. Shigeta, T. Senba, K. Matsumura, Y. Nakajima, T. Mizuno, M. Morinaga, M. Sasaki, T. Togashi, M. Oyama, H. Hata, M. Watanabe, T. Komatsu, Mizushima J. Sugano, T. Satoh, Y. Shirai, Y. Takahashi, K. Nakagawa, K. Okumura, T. Nagase, N. Nomura, H. Kikuchi, Y. Masuho, R. Yamashita, K. Nakai, T. Yada, Y. Nakamura, O. Ohara, T. Isogai, S. Sugano posted to 0500 20 20040203 21-22 analysis and biology chromosomes comparative complementary computational dna frames govt human humans messenger non-us open pair reading research rna sequence study support y by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	Empirical analysis of transcriptional activity in the Arabidopsis genome [My Copy] Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846. by K. Yamada, J. Lim, J. M. Dale, et al.H. Chen, P. Shinn, C. J. Palm, A. M. Southwick, H. C. Wu, C. Kim, M. Nguyen, P. Pham, R. Cheuk, Karlin G. Newmann, S. X. Liu, B. Lam, H. Sakano, T. Wu, G. Yu, M. Miranda, H. L. Quach, M. Tripp, C. H. Chang, J. M. Lee, M. Toriumi, M. M. Chan, C. C. Tang, C. S. Onodera, J. M. Deng, K. Akiyama, Y. Ansari, T. Arakawa, J. Banh, F. Banno, L. Bowser, S. Brooks, P. Carninci, Q. Chao, N. Choy, A. Enju, A. D. Goldsmith, M. Gurjal, N. F. Hansen, Y. Hayashizaki, Johnson C. Hopson, V. W. Hsuan, K. Iida, M. Karnes, S. Khan, E. Koesema, J. Ishida, P. X. Jiang, T. Jones, J. Kawai, A. Kamiya, C. Meyers, M. Nakajima, M. Narusaka, M. Seki, T. Sakurai, M. Satou, R. Tamse, M. Vaysberg, E. K. Wallender, C. Wong, Y. Yamamura, S. Yuan, K. Shinozaki, R. W. Davis, A. Theologis, J. R. Ecker posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as
	Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 [My Copy] Genome Res, Vol. 14, No. 3. (Mar 2004), pp. 331-342. by D. Kampa, J. Cheng, P. Kapranov, et al.M. Yamanaka, S. Brubaker, S. Cawley, J. Drenkow, A. Piccolboni, S. Bekiranov, G. Helt, H. Tammana, T. R. Gingeras posted to 0500 20040318 21genetics 22genetics analysismethods array cell cellschemistrymetabolism chromosome chromosomes data dna expression gene genes geneticgenetics govt human humans jurkat line mappingmethods messengergenetics molecular neoplasmgenetics non-us oligonucleotide pair phs probesgenetics profilingmethods research rna rnagenetics sequence structural structuralgenetics support transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:48 as

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