Group: Bioinformatics - with tag homology [30 articles] Export Sort

Recent papers posted by members of the Bioinformatics group with tag homology

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	When is homology not homology? [My Copy] Curr Opin Genet Dev, Vol. 8, No. 6. (December 1998), pp. 675-680. by G. A. Wray, E. Abouheif posted to homology by sangeetha to the group Bioinformatics on 2007-03-20 09:36:28 as along with 2 people and 1 group anatiferous neetiitr insilicodrug
	H2AX: tailoring histone H2A for chromatin-dependent genomic integrity. [My Copy] Biochem Cell Biol, Vol. 83, No. 4. (2005), pp. 505-15. by A. Li, Eirin J. M. Lopez, J. Ausio posted to genome-chromatin transcription support sequence research repairphysiology phosphorylation non-us molecular instability humans homology histonesgeneticsmetabolism govt genomic geneticphysiology dna disassemblyphysiology data chromatin assembly animals and amino acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:28 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Global identification of human transcribed sequences with genome tiling arrays [My Copy] Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246. by P. Bertone, V. Stolc, T. E. Royce, et al.J. S. Rozowsky, A. E. Urban, X. Zhu, J. L. Rinn, W. Tongprasit, M. Samanta, S. Weissman, M. Gerstein, M. Snyder posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as
	Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication [My Copy] Nature, Vol. 437, No. 7055. (Sep 2005), pp. 94-100. by E. V. Linardopoulou, E. M. Williams, Y. Fan, C. Friedman, J. M. Young, B. J. Trask posted to 0900 20050913 acid animals base biology breakagegenetics chromosome chromosomes computational dna duplication extramural factors gene genetic geneticgenetics genome genomics govt homology human humangenetics humans models nih nucleic phs polymorphism primatesgenetics recombination repair research sequence support telomeregenetics time translocation us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:41 as
	The human genome browser at UCSC [My Copy] Genome Res, Vol. 12, No. 6. (Jun 2002), pp. 996-1006. by W. J. Kent, C. W. Sugnet, T. S. Furey, et al.K. M. Roskin, T. H. Pringle, A. M. Zahler, D. Haussler posted to 1001 20020702 acid california database databases expression gene genes genetic genome govt homology human humans management messenger non-phs non-us nucleic phs research rna sequence software structural support systems universitiestrends us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	EST\_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA [My Copy] Comput Appl Biosci, Vol. 13, No. 4. (Aug 1997), pp. 477-478. by R. Mott posted to 0001 16genetics 19970801 acid algorithms alignmentmethodsstatistics base chromosomes complementarygenetics data dna evaluation expression gene genome govt homology human humans molecular non-us nucleic numerical pair recombinant research sequence software studies support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:34 as
	Functions and mechanisms of RNA editing [My Copy] Annu Rev Genet, Vol. 34 (2000), pp. 499-531. by J. M. Gott, R. B. Emeson posted to 1001 20010307 acid amino base conformation data editing homology messengerchemistrygenetics molecular nucleic rna sequence transferchemistrygenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:21 as
	GAZE: a generic framework for the integration of gene-prediction data by dynamic programming [My Copy] Genome Res, Vol. 12, No. 9. (Sep 2002), pp. 1418-1427. by K. L. Howe, T. Chothia, R. Durbin posted to 0400 20021031 acid algorithms alignment and animals biologymethodsstatistics caenorhabditis comparative computational data databases elegansgenetics factual forecastingmethods genes genetic genome govt helminthgenetics homology information internet models non-us nucleic numerical probability research retrievalstatistics rna sequence sites software storage structural study support tagged trans-splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:15 as
	Integrating genomic homology into gene structure prediction [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S140-S148. by I. Korf, P. Flicek, D. Duan, M. R. Brent posted to 1001 20020228 acid algorithms alignmentstatistics and animals base biology comparative computational conserved data dnagenetics evolution genome govt homology human humans mice models molecular non-phs non-us nucleic numerical phs research sensitivity sequence specificity statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:11 as
	The Ensembl automatic gene annotation system [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 942-950. by V. Curwen, E. Eyras, T. D. Andrews, et al.L. Clarke, E. Mongin, S. M. Searle, M. Clamp posted to 0500 biologymethods computational helminth helminthgenetics helminthphysiology mice structural support tandem tests 20040818 acid dnagenetics dosage human proteinsgenetics pseudogenesgenetics sequence tags untranslated us value animals anophelesgenetics caenorhabditisgenetics comparative genome homology insect insectphysiology non-us predictive rats regionsgenetics repeat sequencesgenetics amino dna gene govt of phs software study alignmentmethods automation expressed genes humans research structuralphysiology by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:49 as
	Hidden Markov models for sequence analysis: extension and analysis of the basic method [My Copy] Comput Appl Biosci, Vol. 12, No. 2. (Apr 1996), pp. 95-107. by R. Hughey, A. Krogh posted to amino factual models 0001 algorithms chains studies alignmentmethodsstatistics evaluation govt homology non-us sequence acid analysismethodsstatistics data domainsgenetics humans markov numerical src statistical support us 19960401 animals base databases non-phs research software by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:09 as
	Gene finding with a hidden Markov model of genome structure and evolution [My Copy] Bioinformatics, Vol. 19, No. 2. (Jan 2003), pp. 219-227. by J. S. Pedersen, J. Hein posted to 0500 20030828 algorithms alignmentmethods analysis animals chains computer dnamethods evolution genetic genome govt homology humans markov mice models molecular non-us phylogeny processes research sequence simulation statistical stochastic support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:58 as
	Comparative analyses of multi-species sequences from targeted genomic regions [My Copy] Nature, Vol. 424, No. 6950. (Aug 2003), pp. 788-793. by J. W. Thomas, J. W. Touchman, R. W. Blakesley, et al.G. G. Bouffard, Beckstrom S. M. Sternberg, E. H. Margulies, M. Blanchette, A. C. Siepel, P. J. Thomas, J. C. Mcdowell, B. Maskeri, N. F. Hansen, M. S. Schwartz, R. J. Weber, W. J. Kent, D. Karolchik, T. C. Bruen, R. Bevan, D. J. Cutler, S. Schwartz, L. Elnitski, J. R. Idol, A. B. Prasad, Lee S. Q. Lin, V. V. Maduro, T. J. Summers, M. E. Portnoy, N. L. Dietrich, N. Akhter, K. Ayele, B. Benjamin, K. Cariaga, C. P. Brinkley, S. Y. Brooks, S. Granite, X. Guan, J. Gupta, P. Haghighi, S. L. Ho, M. C. Huang, E. Karlins, P. L. Laric, R. Legaspi, M. J. Lim, Q. L. Maduro, C. A. Masiello, S. D. Mastrian, J. C. Mccloskey, R. Pearson, S. Stantripop, E. E. Tiongson, J. T. Tran, C. Tsurgeon, J. L. Vogt, M. A. Walker, K. D. Wetherby, L. S. Wiggins, A. C. Young, L. H. Zhang, K. Osoegawa, B. Zhu, B. Zhao, C. L. Shu, P. J. De Jong, C. E. Lawrence, A. F. Smit, A. Chakravarti, D. Haussler, P. Green, W. Miller, E. D. Green posted to 0500 20030822 7genetics acid alignment animals chromosomes comparative conductance conserved cystic dna elementsgenetics evolution fibrosis genome genomics govt homology human mammalsgenetics molecular mutagenesisgenetics non-us nucleic pair phs phylogeny regulatorgenetics sequence sequencegenetics species specificity study support transmembrane transposable us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:44 as
	Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae [My Copy] Nucleic Acids Res, Vol. 30, No. 5. (Mar 2002), pp. 1233-1239. by C. T. Webb, S. A. Shabalina, A. Y. Ogurtsov, A. S. Kondrashov posted to 1001 20020312 acid analysis animals base caenorhabditis caenorhabditisgenetics comparative data dna elegansgenetics gc govt helminthanalysis homology intergenic molecular nucleic phs phylogeny regions rich sequence species specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:43 as
	Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences [My Copy] Trends Genet, Vol. 19, No. 3. (Mar 2003), pp. 115-119. by F. A. Kondrashov, E. V. Koonin posted to 0500 20030605 acid alternative amino animals conserved data evolution genetic homology human introns isoformschemistrygenetics models molecular protein proteinschemistry sequence splicinggenetics structure tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:43 as
	Using database matches with for HMMGene for automated gene detection in Drosophila [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 523-528. by A. Krogh posted to 0900 20000617 acid alcohol analysis and animals biologystatistics chains comparative computational computer-assisted data databases dehydrogenasegenetics drosophila factual genes govt homology insectgenetics markov melanogasterenzymologygenetics non-us nucleic numerical sensitivity sequence software specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:36 as
	A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. [My Copy] Genome Res., Vol. 12, No. 7. (Jul 2002), pp. 1080-90. by Vincent Daubin, Manolo Gouy, Guy Perrière posted to 12097345 acid algorithms alignment alligators analysis and angiosperms animals array artiodactyla b bacterial base bayes behavior biodiversity biology biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computational computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genes genetic genetics genome govt graphics group hibernation homology interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us nucleic oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics structural study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:23 as along with 2 groups biodiversity_conservation GrassBase
	Slipped-strand mispairing in a plastid gene: rpoC2 in grasses (Poaceae). [My Copy] Mol. Biol. Evol., Vol. 11, No. 1. (Jan 1994), pp. 1-8. by M. P. Cummings, L. M. King, E. A. Kellogg posted to 5s 8121278 acid aerobiosis alcohol alignment amino anaerobiosis angiosperms animals arabidopsis base c cell cereals cerevisiae chloroplasts comparative complex conformation cytochrome data dehydrogenase diploidy dna dna-directed electron enzyme evolution expression family fungal fungi gene genes genetic genetics govt group haplotypes homeobox homeodomain homology humans immunoglobulin induction iv kinetics mays models molecular multigene mutation non-phs non-us nucleic nucleus oxygen phs phylogeny plant plants plastids poaceae polymerases polymorphism primers protein proteins region regulation repetitive research ribosomal rna saccharomyces secondary selection sequence sequences species specificity structural structure study support transcription transport triticum us variable variation zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as along with 2 groups biodiversity_conservation GrassBase
	Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. [My Copy] Mol Phylogenet Evol, Vol. 8, No. 2. (Oct 1997), pp. 150-66. by P. Catalán, E. A. Kellogg, R. G. Olmstead posted to 9299221 acid amino angiosperms animals base chloroplasts comparative data dna evolution family fungi genes genetic genetics govt homeobox homeodomain homology humans models molecular multigene non-phs non-us phylogeny plant poaceae primers protein proteins research secondary sequence structure study support us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:17 as along with 2 groups biodiversity_conservation GrassBase
	Effects of oxygen concentration on the expression of cytochrome c and cytochrome c oxidase genes in yeast. [My Copy] J. Biol. Chem., Vol. 272, No. 23. (Jun 1997), pp. 14705-12. by P. V. Burke, D. C. Raitt, L. A. Allen, E. A. Kellogg, R. O. Poyton posted to induction iv kinetics mays models molecular multigene non-phs non-us nucleus oxygen phs phylogeny plant plants poaceae primers protein proteins regulation research saccharomyces secondary sequence structure study support transcription transport us variation zea bibtex-import 9169434 acid aerobiosis amino anaerobiosis angiosperms animals base c cell cerevisiae chloroplasts comparative complex cytochrome data dna electron enzyme evolution expression family fungal fungi gene genes genetic genetics govt group homeobox homeodomain homology humans by kehan to the group Bioinformatics on 2006-07-13 16:23:16 as along with 2 groups biodiversity_conservation GrassBase
	Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa? [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 94, No. 25. (Dec 1997), pp. 13749-53. by G. Bharathan, B. J. Janssen, E. A. Kellogg, N. Sinha posted to 9391098 acid amino angiosperms animals comparative data evolution family fungi genes genetic govt homeobox homeodomain homology humans models molecular multigene non-phs non-us phylogeny protein proteins research secondary sequence structure study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:13 as along with 2 groups biodiversity_conservation GrassBase
	Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins. [My Copy] Mol. Biol. Evol., Vol. 16, No. 4. (Apr 1999), pp. 553-63. by G. Bharathan, B. J. Janssen, E. A. Kellogg, N. Sinha posted to trait us variance variation bibtex-import synthase 10331280 acid alignment amino analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules homeobox homeodomain homology leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny theorem by kehan to the group Bioinformatics on 2006-07-13 16:23:11 as along with 2 groups biodiversity_conservation GrassBase
	An algorithm for detecting homologues of known structured RNAs in genomes. [My Copy] Proc IEEE Comput Syst Bioinform Conf (2004), pp. 300-310. by S. Y. Le, J. V. Maizel, K. Zhang posted to algorithm bioinformatics homology rna search structure by bsmagic to the group Bioinformatics on 2006-07-12 14:02:31 as along with 2 people and 3 groups marcius arcticrasta BioinfoCIPF bioinplant SGU-CIPF
	Improved tools for biological sequence comparison. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 8. (April 1988), pp. 2444-2448. by W. R. Pearson, D. J. Lipman posted to bioinformatics homology search sequence tool by bsmagic to the group Bioinformatics on 2006-07-12 14:00:19 as along with 15 people and 1 group rshe maria_hauser pachorip parnell carlosviana cawelsh9 arcticrasta ffranca gurkanbebek CitoJam lusk cjeans sujaikumar Ema bozdagd bioinplant
	Homology-based modelling of targets for rational drug design. [My Copy] Mini Rev Med Chem, Vol. 4, No. 7. (September 2004), pp. 793-804. by H. Wieman, K. Tøndel, E. Anderssen, F. Drabløs posted to based design drug homology by sangeetha to the group Bioinformatics on 2006-01-25 09:34:46 as along with 1 person and 1 group dfgreen insilicodrug
	Remote homology detection: a motif based approach. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by A. Ben-Hur, D. Brutlag posted to homology motif by okarsligil to the group Bioinformatics on 2005-11-29 18:57:29 as along with 2 people ujh Cortel

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protein	45
algorithm	40
sequence	39
evolution	38
bioinformatics	31
search	27
modeling	25
alignment	22
orthology	18
software	18
structure	17
genome	15
prediction	15
docking	14
methods	14
phylogeny	14
databases	12
rna	12
modelling	11
paralogy	11
blast	10
gpcr	10
data-mining	9
phylogenomics	9
review	9
similarity	9
amino-acid	8
gene	8
hmm	8
model	8
algorithms	7
animals	7
humans	7
phyloinformatics	7
spaced-seeds	7
topology	7
acid	6
amino	6
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dna	6
ligand	6
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svm	6
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analysis	5
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bacteria	5
biology	5
comparative	5
design	5
models	5
molecular	5
motif	5
networks	5
proteome	5
synteny	5
3dqsar	4
clustering	4
gabaa	4
genetics	4
genomics	4
md	4
mice	4
ortholog	4
receptor	4
specificity	4
assessment	3
casp	3
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character	3
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computational	3
coverage	3
curvature	3
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domain	3
drug	3
enzyme	3
eukaryotic	3
evaluation	3
folding	3
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internet	3
mirna	3
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prokaryotes	3
quality	3
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simulation	3
thesis	3
user-computer	3
wsn	3

Group: Bioinformatics - with tag homology [30 articles] Export Sort

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