Group: Bioinformatics - with tag network [82 articles] Export

Recent papers posted by members of the Bioinformatics group with tag network

	GEM-TREND: a web tool for gene expression data mining toward relevant network discovery. [My Copy] BMC genomics, Vol. 10, No. 1. (3 September 2009), 411. by Chunlai Feng, Michihiro Araki, Ryo Kunimoto, et al.Akiko Tamon, Hiroki Makiguchi, Satoshi Niijima, Gozoh Tsujimoto, Yasushi Okuno posted to web tool relevant network mining gene expression discovery data by dswan to the group Bioinformatics on 2009-09-14 11:08:04 as along with 6 people guhjy daforerog pengchy ptrobajo sotacam barriot
	Analysis of Gene Sets Based on the Underlying Regulatory Network [My Copy] Journal of Computational Biology, Vol. 16, No. 3. (March 2009), pp. 407-426. by Ali Shojaie, George Michailidis posted to gene_set_analysis network by jfr to the group Bioinformatics on 2009-07-23 16:00:07 as along with 4 people zufar shikin guhjy rdiaz
	Clustered microRNAs' coordination in regulating protein-protein interaction network [My Copy] BMC Systems Biology, Vol. 3, No. 1. (26 June 2009), 65. by Xiongying Yuan, Changning Liu, Pengcheng Yang, et al.Shunmin He, Qi Liao, Shuli Kang, Yi Zhao posted to biology clustered coordination interaction microrna network protein regulating systems by dswan to the group Bioinformatics on 2009-07-13 10:10:38 as along with 3 people daforerog cisevol ealloza
	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted to analysis and cluster filtering for genes network by dswan to the group Bioinformatics on 2009-07-10 10:56:46 as along with 6 people zufar shikin lwaldron rdiaz bertelsen erexhepa
	Disease candidate gene identification and prioritization using protein interaction networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 73. by Jing Chen, Bruce Aronow, Anil Jegga posted to disease_genes network prioritization protein_interaction by jfr to the group Bioinformatics on 2009-07-09 12:34:31 as along with 12 people carlk zufar guhjy daforerog saket provero mitko neils barriot grahamc renatomilani rjazwiec
	Extraction of biological interaction networks from scientific literature. [My Copy] Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 263-276. by A. Skusa, A. Rüegg, J. Köhler posted to extraction interaction network system_biology text-mining by svozil to the group Bioinformatics on 2009-04-10 21:32:38 as along with 2 people and 1 group yas natsu T_lab
	BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 543-544. by Ryosuke R. Ishiwata, Masaki S. Morioka, Soichi Ogishima, Hiroshi Tanaka posted to 3d application central course dogma hierarchical microarray network system time visualisation by dswan to the group Bioinformatics on 2009-02-16 11:10:47 as along with 4 people thomaskelder lptolik renatomilani dolchan
	Reconstruction of biochemical networks in microorganisms. [My Copy] Nature reviews. Microbiology (31 December 2008) by Adam M M. Feist, Markus J J. Herrgård, Ines Thiele, Jennie L L. Reed, Bernhard Ø O. Palsson posted to network reconstruction systems by pinney to the group Bioinformatics on 2009-02-05 12:34:33 as along with 10 people coela roys rdiaz mycomodel tobitas michaelbarton friveroll behindtherabbit druvus dullhunk
	Modularity of cellular networks shows general center-periphery polarization [My Copy] Bioinformatics (25 October 2008), btn555. by Alexander E. Vinogradov posted to bioinformatics biology cell closeness e-coli eigenvector gene go grid high-throughput interaction kegg modular network power protein regulatory topology ucinet yeast by behindtherabbit to the group Bioinformatics on 2008-12-04 18:59:00 as along with 3 people cgaugain grahamc renatomilani
	An automated method for finding molecular complexes in large protein interaction networks. [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003) by G. D. Bader, C. W. Hogue posted to complex cytoscape interaction network plugin protein by dswan to the group Bioinformatics on 2008-11-25 15:24:36 as along with 10 people and 1 group zufar waqaralikeble cswinburne jiny dragonrez lfriedl nirfriedman massivemayhem carlk ethkim kdl
	Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 279-290. by O. Gevaert, S. Van Vooren, B. de Moor posted to bayesian integration literature microarray network text by frohike to the group Bioinformatics on 2008-04-07 14:49:29 as along with 2 people mitko jfr
	A Framework for Elucidating Regulatory Networks Based on Prior Information and Expression Data [My Copy] Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 240-248. by Olivier Gevaert, V. A. N. Vooren, N. Steve, D. E. Moor, T. Bar posted to bayesian dream integration microarray network prior protein by frohike to the group Bioinformatics on 2008-04-07 14:48:50 as along with 1 person guhjy
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted to cancer classification interaction network protein by frohike to the group Bioinformatics on 2008-03-05 17:20:01 as along with 29 people and 3 groups yaredo fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Complex Networks Jarman Lab GeneGo
	Current progress in network research: toward reference networks for key model organisms [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 318-332. by Balaji S. Srinivasan, Nigam H. Shah, Jason A. Flannick, Eduardo Abeliuk, Antal F. Novak, Serafim Batzoglou posted to network by sleepingcell to the group Bioinformatics on 2007-09-04 09:40:54 as along with 11 people carlk abhishek_tiwari akshayk ptrobajo pengchy guhjy grahamc nedwards roys daed marck
	Integrating physical and genetic maps: from genomes to interaction networks [My Copy] Nature Reviews Genetics, Vol. 8, No. 9. (01 September 2007), pp. 699-710. by Andreas Beyer, Sourav Bandyopadhyay, Trey Ideker posted to network genomics by sleepingcell to the group Bioinformatics on 2007-08-20 12:08:12 as along with 21 people and 3 groups Jporci dakelley chasmand mtaschuk Zephyrus druvus yyby misonneh giovenko bpcusack guhjy balicea dchughes sebastien_vigneau grahamc joepickrell zwang shikin lh1 cdeane carlk Roswell Cancer Crosstalk G4ID Genetics-of-Gambling
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted to network by sleepingcell to the group Bioinformatics on 2007-07-30 09:04:47 as along with 40 people and 8 groups robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Network Analysis of Genes Regulated in Renal Diseases Biostatistics Computational-Genomics Neuroscience steinmetzlab ic4 generif_paper GomezLab
	In Search of the Biological Significance of Modular Structures in Protein Networks [My Copy] PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107. by Zhi Wang, Jianzhi Zhang posted to network by sleepingcell to the group Bioinformatics on 2007-06-06 09:10:04 as along with 7 people jfr grahamc massivemayhem cjeans zwang cabbagezs pinney
	Understanding Network Concepts in Modules [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Jun Dong, Steve Horvath posted to network by sleepingcell to the group Bioinformatics on 2007-06-05 05:41:43 as along with 8 people schwartzjmc druvus pengchy jfr kengg grahamc natstreet kaihsyn
	SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks [My Copy] Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451. by Stefan Bornholdt posted to network by sleepingcell to the group Bioinformatics on 2007-05-21 03:29:19 as along with 8 people jmenche snuppepuppan eldan jmeppley balajis wnpx biosv fishtank
	Genetic reconstruction of a functional transcriptional regulatory network. [My Copy] Nat Genet (8 April 2007) by Zhanzhi Hu, Patrick J J. Killion, Vishwanath R R. Iyer posted to tfbs regulation prediction network by sleepingcell to the group Bioinformatics on 2007-04-11 07:25:32 as along with 16 people and 5 groups sergiun TheresaNiederberger akraemer behindtherabbit ptrobajo dpollard xico nickluscombe zwang lizabeth dejori xingxu naegele czeller mapplab siebert EisenLab WetBiology EBI-regulation ic4 generif_paper
	A network perspective on the topological importance of enzymes and their phylogenetic conservation. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by Wei-chung C. Liu, Wen-hsien H. Lin, Andrew J. Davis, Ferenc Jordán, Hsih-te T. Yang, Ming-jing J. Hwang posted to network by sleepingcell to the group Bioinformatics on 2007-04-11 07:24:59 as along with 6 people pablocarb shung renatomilani jiny ptrobajo mdstobbe
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:42:05 as along with 24 people and 3 groups schwartzjmc tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang carlk RobMills Diego_Prada marcio streptomyces dbk-lab kdl
	Motifs, modules and games in bacteria. [My Copy] Curr Opin Microbiol, Vol. 6, No. 2. (April 2003), pp. 125-134. by D. M. Wolf, A. P. Arkin posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:41:17 as along with 2 people rklancer heliopais
	Conservation of regulatory elements between two species of Drosophila. [My Copy] BMC Bioinformatics, Vol. 4 (20 November 2003) by E. Emberly, N. Rajewsky, E. D. Siggia posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:41:05 as along with 2 people dquest emptyhb
	Structure and evolution of transcriptional regulatory networks. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 283-291. by M. M. Babu, N. M. Luscombe, L. Aravind, M. Gerstein, S. A. Teichmann posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:40:45 as along with 7 people and 1 group kaarsinogen tny kengg koller tvdbulck cjeans karfunkel Plantandetc
	Genome evolution reveals biochemical networks and functional modules. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15428-15433. by C. von Mering, E. M. Zdobnov, S. Tsoka, et al.F. D. Ciccarelli, J. B. Pereira-Leal, C. A. Ouzounis, P. Bork posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:39:46 as along with 2 people and 1 group ujh lfriedl kdl
	Modularity and evolutionary constraint on proteins [My Copy] Nature Genetics, Vol. 37, No. 4. (06 March 2005), pp. 351-352. by Hunter B. Fraser posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:39:22 as along with 1 person rklancer
	Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7203-7208. by Amos Tanay, Aviv Regev, Ron Shamir posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:39:03 as along with 4 people vingron roys Schmidtc carlk
	Methods to reveal domain networks [My Copy] Drug Discovery Today, Vol. 10, No. 16. (15 August 2005), pp. 1111-1117. by Elena Santonico, Luisa Castagnoli, Gianni Cesareni posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:38:42 as along with 4 people wnpx eukfn cjeans gulkur
	Gene annotation and network inference by phylogenetic profiling. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Wu, Z. Hu, C. DeLisi posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:38:26 as along with 1 group Visiting Position
	Differential evolutionary conservation of motif modes in the yeast protein interaction network. [My Copy] BMC Genomics, Vol. 7 (2006) by W. P. Lee, B. C. Jeng, T. W. Pai, C. P. Tsai, C. Y. Yu, W. S. Tzou posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:33:59 as
	The outcomes of pathway database computations depend on pathway ontology [My Copy] Nucl. Acids Res., Vol. 34, No. 13. (7 August 2006), pp. 3687-3697. by M. L. Green, P. D. Karp posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:32:56 as along with 2 people kuhn eweaver
	GrÃ¦mlin: General and robust alignment of multiple large interaction networks [My Copy] Genome Research, Vol. 16, No. 9. (September 2006), pp. 1169-1181. by Jason Flannick, Antal Novak, Balaji S. Srinivasan, Harley H. McAdams, Serafim Batzoglou posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 17:12:23 as along with 3 people jfr balajis mdstobbe
	Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms. [My Copy] PLoS Comput Biol, Vol. 2, No. 11. (24 November 2006) by K. Xia, H. Xue, D. Dong, et al.S. Zhu, J. Wang, Q. Zhang, L. Hou, H. Chen, R. Tao, Z. Huang, Z. Fu, Y. G. Chen, J. D. Han posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 16:35:20 as along with 3 people isimpson tmmurali jfr
	Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems. [My Copy] PLoS Comput Biol, Vol. 2, No. 12. (1 December 2006) by Duccio Medini, Antonello Covacci, Claudio Donati posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 16:33:27 as along with 2 people bjorns mloewer
	Detecting conserved interaction patterns in biological networks. [My Copy] J Comput Biol, Vol. 13, No. 7. (September 2006), pp. 1299-1322. by M. Koyutürk, Y. Kim, S. Subramaniam, W. Szpankowski, A. Grama posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 16:32:18 as along with 6 people sergiun babakap cswinburne balajis massivemayhem mirzazadeh
	Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate [My Copy] Nature Cell Biology, Vol. 9, No. 3. (18 February 2007), pp. 324-330. by Silvia D. M. Santos, Peter J. Verveer, Philippe I. H. Bastiaens posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 16:23:57 as along with 4 people laurabailey ptrobajo balabu pmendes
	The potential for signal integration and processing in interacting MAP kinase cascades. [My Copy] J Theor Biol (14 January 2007) by John H H. Schwacke, Eberhard O O. Voit posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 16:23:39 as along with 1 person guhjy
	Regulation of metabolic networks by small molecule metabolites [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (13 March 2007), 88. by Alex Gutteridge, Minoru Kanehisa, Susumu Goto posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 16:12:47 as along with 5 people JeremyZucker schwartzjmc marodoc aswin shung
	Extraction of phylogenetic network modules from the metabolic network [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 130. by Takuji Yamada, Minoru Kanehisa, Susumu Goto posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 14:03:43 as along with 2 people calderonv adampah
	Extraction of phylogenetic network modules from prokayrote metabolic pathways. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 15, No. 1. (2004), pp. 249-258. by T. Yamada, S. Goto, M. Kanehisa posted to network module by sleepingcell to the group Bioinformatics on 2007-04-05 14:03:06 as along with 1 person alexg
	An integrated mass spectrometric and computational framework for the analysis of protein interaction networks [My Copy] Nature Biotechnology, Vol. 25, No. 3. (25 February 2007), pp. 345-352. by Oliver Rinner, Lukas N. Mueller, Martin Hubálek, Markus Müller, Matthias Gstaiger, Ruedi Aebersold posted to ms network protein by okarsligil to the group Bioinformatics on 2007-03-19 13:10:19 as along with 5 people guhjy jfr Dualsystems nedwards mingzhi
	Classes of complex networks defined by role-to-role connectivity profiles [My Copy] Nat Phys, Vol. 3, No. 1. (January 2007), pp. 63-69. by Roger Guimera, Marta Sales-Pardo, Luis A. Amaral posted to network connectivity by okarsligil to the group Bioinformatics on 2007-01-11 14:29:43 as along with 9 people lawraga adampah ocs tny aalibes jaspervoskuilen biehl AbnerCYH Diego_Prada
	The regulatory architecture of the human genome. [My Copy] Asia Pac J Clin Nutr, Vol. 13, No. Suppl. (2004) by J. S. Mattick posted to genomics network regulation by bsmagic to the group Bioinformatics on 2006-11-16 13:26:01 as along with 1 person and 1 group snuppepuppan bioinplant
	Principles of microRNA regulation of a human cellular signaling network. [My Copy] Molecular systems biology, Vol. 2 (2006) by Qinghua Cui, Zhenbao Yu, Enrico O. Purisima, Edwin Wang posted to network regulation signaling by okarsligil to the group Bioinformatics on 2006-10-17 14:54:47 as along with 9 people and 3 groups epinatel daforerog jfr marcius tardigrade mtagaya ealloza maralena bootsy cube_and_beyond BioinfoCIPF SGU-CIPF
	Functional annotation and network reconstruction through cross-platform integration of microarray data [My Copy] Nat Biotech, Vol. 23, No. 2. (16 February 2005), pp. 238-243. by Xianghong J. Zhou, Ming-Chih J. Kao, Haiyan Huang, et al.Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M. Aparicio, Caleb E. Finch, Todd E. Morgan, Wing H. Wong posted to algorithm expression microarray modeling network networks omics reconstruction regulatory by bsmagic to the group Bioinformatics on 2006-08-11 03:26:26 as along with 8 people and 1 group Borelli cswinburne setar andytseng imouthesmp lyongu wnpx rdiaz bioinplant
	A gene fusion network in human neoplasia [My Copy] Oncogene, Vol. aop, No. current. by M. Höglund, A. Frigyesi, F. Mitelman posted to cancer fusion gene hubs human network by bsmagic to the group Bioinformatics on 2006-08-11 03:03:15 as along with 2 people and 2 groups ealloza Garamonfok BioinfoCIPF bioinplant
	Modeling Lactococcus lactis using a genome-scale flux model. [My Copy] BMC Microbiol, Vol. 5 (2005) by A. P. Oliveira, J. Nielsen, J. Förster posted to flux metabolic microbe model network reconstruction by bsmagic to the group Bioinformatics on 2006-08-01 21:32:20 as along with 1 person and 2 groups athleem bioinplant JJJ
	Reconstructing the metabolic network of a bacterium from its genome. [My Copy] Trends in microbiology, Vol. 13, No. 11. (November 2005), pp. 550-558. by C. Francke, R. J. Siezen, B. Teusink posted to bacterium genome metabolic network reconstruction template by bsmagic to the group Bioinformatics on 2006-08-01 21:27:02 as along with 6 people and 1 group neilswainston kuhn jmeppley JeremyZucker gurkanbebek shung bioinplant
	metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella [My Copy] Nucleic Acids Research, Vol. 33, No. 4., pp. 1399-1409. by W. Pinney, W. Shirley, A. Mcconkey, R. Westhead posted to metabolic network prediction reconstruction sequence software systems by bsmagic to the group Bioinformatics on 2006-08-01 21:24:10 as along with 4 people and 1 group jmeppley eweaver shung hryk bioinplant

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Group: Bioinformatics - with tag network [82 articles] Export

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