Group: Bioinformatics - with tag non-phs [66 articles] Export

Recent papers posted by members of the Bioinformatics group with tag non-phs

	Gene targeting in plants: fingers on the move. [My Copy] Trends Plant Sci, Vol. 11, No. 4. (2006), pp. 159-61. by S. Kumar, G. C. Allen, W. F. Thompson posted to genome-chromatin zinc us targetingmethods support research repair recombination plantsgenetics plant non-us non-phs govt genome genetic gene fingersphysiology endodeoxyribonucleaseschemistrymetabolism dna disassembly chromatin assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Role of transposable elements in heterochromatin and epigenetic control. [My Copy] Nature, Vol. 430, No. 6998. (2004), pp. 471-6. by Z. Lippman, A. V. Gendrel, M. Black, et al.M. W. Vaughn, N. Dedhia, W. R. Mccombie, K. Lavine, V. Mittal, B. May, K. D. Kasschau, J. C. Carrington, R. W. Doerge, V. Colot, R. Martienssen posted to sequencesgenetics sequence rna research repeat regulation proteinsgeneticsmetabolism proteinsgenetics plantgenetics plant phs oligonucleotide non-us non-phs methylation interferinggeneticsmetabolism imprinting homeodomain heterochromatingenetics govt genomic geneticgenetics gene factorsgeneticsmetabolism expression epigenesis elementsgenetics dna-binding dna cytosine-5--methyltransferasemetabolism cluster chromosomes array arabidopsisgenetics arabidopsis analysis genome-chromatin us transposable transcription tandem support small by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. [My Copy] Curr Biol, Vol. 16, No. 5. (2006), pp. 486-92. by P. E. Jullien, A. Katz, M. Oliva, N. Ohad, F. Berger posted to genome-chromatin us support silencing seedsgeneticsmetabolism research repressor regulation proteinsmetabolismphysiology proteinsgeneticsmetabolism protein processing post-translational plant non-us non-phs models methylation imprinting immunoprecipitation histonesmetabolism govt genomic genetic gene expression disassembly development chromatin assembly arabidopsisembryologygeneticsgrowth arabidopsis and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:11 as along with 1 group ProkaryoteInterestGroup
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Integrative annotation of 21,037 human genes validated by full-length cDNA clones [My Copy] PLoS Biol, Vol. 2, No. 6. (Jun 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Yamaguchi Y. Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, Thierry J. Mieg, Thierry D. Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, Bonaldo F. Mde, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, Fukami K. Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, Mariage R. Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, Piatier D. Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Gene structure prediction and alternative splicing analysis using genomically aligned ESTs [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900. by Z. Kan, E. C. Rouchka, W. R. Gish, D. J. States posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Frequent alternative splicing of human genes [My Copy] Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293. by A. A. Mironov, J. W. Fickett, M. S. Gelfand posted to 0001 19991230 5 alignment alternative base contig data databases exonsgenetics expressed factual govt humans intronsgenetics isoformsgenetics mappingmethods molecular non-phs non-us protein regionsgenetics research sequence sequencegenetics splicing support tags untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Empirical analysis of transcriptional activity in the Arabidopsis genome [My Copy] Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846. by K. Yamada, J. Lim, J. M. Dale, et al.H. Chen, P. Shinn, C. J. Palm, A. M. Southwick, H. C. Wu, C. Kim, M. Nguyen, P. Pham, R. Cheuk, Karlin G. Newmann, S. X. Liu, B. Lam, H. Sakano, T. Wu, G. Yu, M. Miranda, H. L. Quach, M. Tripp, C. H. Chang, J. M. Lee, M. Toriumi, M. M. Chan, C. C. Tang, C. S. Onodera, J. M. Deng, K. Akiyama, Y. Ansari, T. Arakawa, J. Banh, F. Banno, L. Bowser, S. Brooks, P. Carninci, Q. Chao, N. Choy, A. Enju, A. D. Goldsmith, M. Gurjal, N. F. Hansen, Y. Hayashizaki, Johnson C. Hopson, V. W. Hsuan, K. Iida, M. Karnes, S. Khan, E. Koesema, J. Ishida, P. X. Jiang, T. Jones, J. Kawai, A. Kamiya, C. Meyers, M. Nakajima, M. Narusaka, M. Seki, T. Sakurai, M. Satou, R. Tamse, M. Vaysberg, E. K. Wallender, C. Wong, Y. Yamamura, S. Yuan, K. Shinozaki, R. W. Davis, A. Theologis, J. R. Ecker posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as
	Applications of DNA tiling arrays for whole-genome analysis [My Copy] Genomics, Vol. 85, No. 1. (Jan 2005), pp. 1-15. by T. C. Mockler, S. Chan, A. Sundaresan, H. Chen, S. E. Jacobsen, J. R. Ecker posted to 0900 20050623 analysismethodstrends animals array chromatin dna expression extramural gene geneticgenetics genome genotype govt humans immunoprecipitationmethodstrends methylation nih non-phs oligonucleotide phs polymorphism profilingmethodstrends research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:40 as
	The human genome browser at UCSC [My Copy] Genome Res, Vol. 12, No. 6. (Jun 2002), pp. 996-1006. by W. J. Kent, C. W. Sugnet, T. S. Furey, et al.K. M. Roskin, T. H. Pringle, A. M. Zahler, D. Haussler posted to 1001 20020702 acid california database databases expression gene genes genetic genome govt homology human humans management messenger non-phs non-us nucleic phs research rna sequence software structural support systems universitiestrends us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	A decision tree system for finding genes in DNA [My Copy] J Comput Biol, Vol. 5, No. 4. (Win 1998), pp. 667-680. by S. Salzberg, A. L. Delcher, K. H. Fasman, J. Henderson posted to 0001 19990311 algorithms chains decision dnaclassificationgenetics genes govt markov non-phs phs research support techniques trees us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	Identification of protein coding regions in genomic DNA [My Copy] J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as
	Interpolated Markov models for eukaryotic gene finding [My Copy] Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31. by S. L. Salzberg, M. Pertea, A. L. Delcher, M. J. Gardner, H. Tettelin posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as
	Finding genes in DNA with a Hidden Markov Model [My Copy] J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141. by J. Henderson, S. Salzberg, K. H. Fasman posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as
	Systematic identification and analysis of exonic splicing silencers [My Copy] Cell, Vol. 119, No. 6. (Dec 2004), pp. 831-845. by Z. Wang, M. E. Rolish, G. Yeo, V. Tung, M. Mawson, C. B. Burge posted to 0900 20050317 a-bgenetics acidgenetics algorithms analysis animals base cells cluster computer cultured data elements exonsgenetics f-hgenetics gene govt group heterogeneous-nuclear humans library molecular non-phs non-us phs regulatory research ribonucleic ribonucleoprotein rna sequence sequences silencer simulation splicinggeneticsphysiology support transcriptionalgenetics us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:25 as
	Identification and analysis of alternative splicing events conserved in human and mouse [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 8. (Feb 2005), pp. 2850-2855. by G. W. Yeo, E. Van Nostrand, D. Holste, T. Poggio, C. B. Burge posted to 0900 20050325 alternative animals base conserved evolution exons expressed govt humans mice non-phs non-us phs research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:24 as
	GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (Jul 2003), pp. 3601-3604. by W. H. Majoros, M. Pertea, C. Antonescu, S. L. Salzberg posted to 0500 20030819 analysis arabidopsisgenetics cells chains dnamethods eukaryotic exons genes govt internet introns markov non-phs phs plant research sequence software support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:21 as
	Improved microbial gene identification with GLIMMER [My Copy] Nucleic Acids Res, Vol. 27, No. 23. (Dec 1999), pp. 4636-4641. by A. L. Delcher, D. Harmon, S. Kasif, O. White, S. L. Salzberg posted to 0001 19991111 algorithms bacterial chains genes genetic govt markov models non-phs phs research support techniquesstandards us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as
	Microbial gene identification using interpolated Markov models [My Copy] Nucleic Acids Res, Vol. 26, No. 2. (Jan 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted to 0001 19980228 algorithms alignment and bacterialanalysischemistry base chains dna frames govt haemophilus helicobacter influenzaegenetics markov non-phs open phs pylorigenetics reading research sensitivity sequence software specificity support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as
	Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions [My Copy] Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582. by C. Wei, P. Lamesch, M. Arumugam, et al.J. Rosenberg, P. Hu, M. Vidal, M. R. Brent posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	Recent advances in gene structure prediction [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (Jun 2004), pp. 264-272. by M. R. Brent, R. Guigo posted to 0900 20041230 acid animals base conformation exons genes genomicstrends govt humans introns models molecular non-phs non-us nucleic phs proteinschemistrygeneticsmetabolism research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:12 as
	Integrating genomic homology into gene structure prediction [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S140-S148. by I. Korf, P. Flicek, D. Duan, M. R. Brent posted to 1001 20020228 acid algorithms alignmentstatistics and animals base biology comparative computational conserved data dnagenetics evolution genome govt homology human humans mice models molecular non-phs non-us nucleic numerical phs research sensitivity sequence specificity statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:11 as
	Predicting full-length transcripts [My Copy] Trends Biotechnol, Vol. 20, No. 7. (Jul 2002) by M. R. Brent posted to 0400 20021126 algorithms alignmentmethods analysis and animals conserved databases dnamethodstrends exonsgenetics expression gene genome govt humans information mice non-phs phs profilingmethodstrends protein research retrievalmethods sequence sequencegenetics software storage support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:10 as
	A gene expression map for the euchromatic genome of Drosophila melanogaster [My Copy] Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660. by V. Stolc, Z. Gauhar, C. Mason, et al.G. Halasz, M. F. van Batenburg, S. A. Rifkin, S. Hua, T. Herreman, W. Tongprasit, P. E. Barbano, H. J. Bussemaker, K. P. White posted to 0900 20041216 algorithms analysis animals array biology computational cycle development dna drosophila drosophilagenetics evolution exons expression female gene genes genetic genome govt insect intergenic introns life male melanogastergeneticsgrowth molecular non-phs non-us oligonucleotide phs probes profiling proteinsgeneticsphysiology research rna sequence splicing stages support synteny transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:04 as
	Eval: a software package for analysis of genome annotations [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (Oct 2003) by E. Keibler, M. R. Brent posted to 0500 20040724 biologystandardsstatistics comparative computational computer data genome govt graphicsstandardsstatistics non-phs numerical phs research softwareclassification study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:02 as
	Hidden Markov models for sequence analysis: extension and analysis of the basic method [My Copy] Comput Appl Biosci, Vol. 12, No. 2. (Apr 1996), pp. 95-107. by R. Hughey, A. Krogh posted to amino factual models 0001 algorithms chains studies alignmentmethodsstatistics evaluation govt homology non-us sequence acid analysismethodsstatistics data domainsgenetics humans markov numerical src statistical support us 19960401 animals base databases non-phs research software by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:09 as
	Genome-wide detection of alternative splicing in expressed sequences of human genes [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (Jul 2001), pp. 2850-2859. by B. Modrek, A. Resch, C. Grasso, C. Lee posted to 1001 20010803 alignment alternative antigenschemistrygenetics base biology computational consensus conserved databases exonsgenetics expressed familygenetics genesgenetics genome genomics govt hla-d human humans internet intronsgenetics kinasesgenetics messengeranalysisgenetics multigene non-phs non-us nucleotidegenetics of polymorphism protein-serine-threonine reproducibility research results rna sequence sequencegenetics single sitesgenetics splice splicinggenetics support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:57 as
	A genomic view of alternative splicing [My Copy] Nat Genet, Vol. 30, No. 1. (Jan 2002), pp. 13-19. by B. Modrek, C. Lee posted to 1001 20020205 alternative analysis animals array biology computational dnagenetics expressed false forecasting genetics genomics govt humans isoformsgenetics messengergenetics non-phs oligonucleotide positive protein reactions research rna sequence splicing support tags us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	A generalized hidden Markov model for the recognition of human genes in DNA [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 4 (1996), pp. 134-142. by D. Kulp, D. Haussler, M. G. Reese, F. H. Eeckman posted to 0001 19960101 chains chromosomes deletion dnachemistry exons genetic govt humanchemistry humans introns markov models non-phs research sequence software support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	Genie--gene finding in Drosophila melanogaster [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 529-538. by M. G. Reese, D. Kulp, H. Tammana, D. Haussler posted to 0900 20000617 analysis animals biologymethods chains comparative computational databases dnamethods drosophila expressed factual genes genetic geneticsgenetics govt insectgenetics markov melanogastergenetics models non-phs phs promoter regions sequence software structural study support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:52 as
	Prediction of complete gene structures in human genomic DNA [My Copy] J Mol Biol, Vol. 268, No. 1. (Apr 1997), pp. 78-94. by C. Burge, S. Karlin posted to 0001 19970425 analysis animals chains comparative data dna exons genes genetic genetics genome govt human introns markov models molecular non-phs phs probability promoter proteinsgenetics regions rna sequence software splicing study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as
	Initial sequencing and analysis of the human genome [My Copy] Nature, Vol. 409, No. 6822. (Feb 2001), pp. 860-921. by E. S. Lander, L. M. Linton, B. Birren, et al.C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. Fitzhugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. Levine, P. Mcewan, K. Mckernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, Stange N. Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. Mcmurray, L. Matthews, S. Mercer, S. Milne, J. C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R. H. Waterston, R. K. Wilson, L. W. Hillier, J. D. Mcpherson, M. A. Marra, E. R. Mardis, L. A. Fulton, A. T. Chinwalla, K. H. Pepin, W. R. Gish, S. L. Chissoe, M. C. Wendl, K. D. Delehaunty, T. L. Miner, A. Delehaunty, J. B. Kramer, L. L. Cook, R. S. Fulton, D. L. Johnson, P. J. Minx, S. W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J. F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R. A. Gibbs, D. M. Muzny, S. E. Scherer, J. B. Bouck, E. J. Sodergren, K. C. Worley, C. M. Rives, J. H. Gorrell, M. L. Metzker, S. L. Naylor, R. S. Kucherlapati, D. L. Nelson, G. M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, D. R. Smith, Doucette L. Stamm, M. Rubenfield, K. Weinstock, H. M. Lee, J. Dubois, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. Yang, J. Yu, J. Wang, G. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Qin, R. W. Davis, N. A. Federspiel, A. P. Abola, M. J. Proctor, R. M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D. R. Cox, M. V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G. A. Evans, M. Athanasiou, R. Schultz, B. A. Roe, F. Chen, H. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W. R. Mccombie, de La, N. Dedhia, H. Blocker, K. Hornischer, G. Nordsiek, R. Agarwala, L. Aravind, J. A. Bailey, A. Bateman, S. Batzoglou, E. Birney, P. Bork, D. G. Brown, C. B. Burge, L. Cerutti, H. C. Chen, D. Church, M. Clamp, R. R. Copley, T. Doerks, S. R. Eddy, E. E. Eichler, T. S. Furey, J. Galagan, J. G. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. Jang, L. S. Johnson, T. A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W. J. Kent, P. Kitts, E. V. Koonin, I. Korf, D. Kulp, D. Lancet, T. M. Lowe, A. Mclysaght, T. Mikkelsen, J. V. Moran, N. Mulder, V. J. Pollara, C. P. Ponting, G. Schuler, J. Schultz, G. Slater, A. F. Smit, E. Stupka, J. Szustakowski, Thierry D. Mieg, Thierry J. Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y. I. Wolf, K. H. Wolfe, S. P. Yang, R. F. Yeh, F. Collins, M. S. Guyer, J. Peterson, A. Felsenfeld, K. A. Wetterstrand, A. Patrinos, M. J. Morgan, J. Szustakowki, P. de Jong, J. J. Catanese, K. Osoegawa, H. Shizuya, S. Choi, Y. J. Chen posted to 1001 20010327 acid analysis animals chromosome conserved cpg databases diseases dna dnamethods drug duplication elements evolution factual forecasting gc gene genes genetic genetics genome govt human inborn industry islands mapping medical molecular mutation non-phs non-us nucleic phs private project proteinsgenetics proteome public repetitive rich rnagenetics sector sequence sequences species specificity support transposable us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:23 as
	Pre-mRNA secondary structure prediction aids splice site prediction [My Copy] Pac Symp Biocomput (2002), pp. 223-234. by D. J. Patterson, K. Yasuhara, W. L. Ruzzo posted to 0400 20021003 acid analysis computer conformation exons functions genetic govt likelihood messengerchemistrygenetics models non-phs nucleic of precursorschemistry reproducibility results rna sequence simulation software splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:20 as
	Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions. [My Copy] Mol Phylogenet Evol, Vol. 25, No. 2. (Nov 2002), pp. 341-60. by Peter Goldblatt, Vincent Savolainen, Obie Porteous, et al.Ivan Sostaric, Martyn Powell, Gail Reeves, John C. Manning, Timothy G. Barraclough, Mark W. Chase posted to 414315 acid allocation analysis angiosperms animals bacterial banks basilicum bayes biodiversity biological birds calibration carboxylase chain classification codon comparative cooperation data databases demography diterpenes dna ecosystem energy environment european evolution factors financial flavonoids fossils functions fungal genes genetic genetics genome geography govt hybridization insects intergenic international interpretation introns iridaceae lamiaceae likelihood linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plants plastids pollen polymerase proteins random rays reaction regression reproducibility research results ribosomal ribulose-bisphosphate sequence solar spacer specimen states statistical study support temperature theorem time tobacco transpiration ultraviolet union united us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Resolution of a supertree/supermatrix paradox. [My Copy] Syst Biol, Vol. 51, No. 4. (Aug 2002), pp. 652-64. by John Gatesy, Conrad Matthee, Rob Desalle, Cheryl Hayashi posted to 14530139 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Hidden likelihood support in genomic data: can forty-five wrongs make a right? [My Copy] Syst Biol, Vol. 54, No. 3. (Jun 2005), pp. 483-92. by John Gatesy, Richard H. Baker posted to 16012113 animals artiodactyla biology classification comparative computational data dolphins evolution extramural female functions fungal genetic genome govt interpretation likelihood male models nih non-phs non-us phs phylogeny research saccharomyces species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Fossil evidence of water lilies (Nymphaeales) in the Early Cretaceous. [My Copy] Nature, Vol. 410, No. 6826. (Mar 2001), pp. 357-60. by E. M. Friis, K. R. Pedersen, P. R. Crane posted to 11268209 angiosperms araceae ecosystem electron evolution flowers fossils genetics govt microscopy non-phs non-us pollen portugal research scanning support us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:35 as along with 2 groups biodiversity_conservation GrassBase
	The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. [My Copy] Mol Phylogenet Evol, Vol. 17, No. 3. (Dec 2000), pp. 388-400. by R. C. Evans, L. A. Alice, C. S. Campbell, E. A. Kellogg, T. A. Dickinson posted to 11133193 alignment analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny synthase theorem trait us variance variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Performance of flip supertree construction with a heuristic algorithm. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 299-308. by Oliver Eulenstein, Duhong Chen, Gordon J. Burleigh, David F. Baca, Michael J. Sanderson posted to 15205054 algorithms alligators and animals classification comparative computer crocodiles data design govt interpretation meta-analysis non-phs phylogeny research simulation statistical study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees. [My Copy] Syst Biol, Vol. 52, No. 6. (Dec 2003), pp. 839-48. by Olaf posted to 14668120 algorithms alignment alligators analysis and angiosperms animals array biodiversity calibration carnivora classification cluster comparative computer crocodiles data design dna evolution factors fossils genetic genetics govt graphics interface interpretation meta-analysis models molecular mutational non-phs non-us oligonucleotide pedigree phylogeny population re research search sequence simulation software statistical study support theoretical time us user-computer variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase
	Supertree construction in the genomic age. [My Copy] Methods Enzymol, Vol. 395 (2005), pp. 745-57. by Olaf posted to 15865993 animals artiodactyla biology carnivora classification comparative computational computer data databases design dolphins evolution extramural female functions fungal genetic genome genomics govt interpretation likelihood male models nih non-phs non-us phs phylogeny research ruminants saccharomyces simulation species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase
	Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. [My Copy] Syst Biol, Vol. 50, No. 4. (Aug 2001), pp. 565-79. by Bininda O. R. Emonds, M. J. Sanderson posted to 12116654 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as along with 2 groups biodiversity_conservation GrassBase
	Molecular phylogenetics of Poaceae: an expanded analysis of rbcL sequence data. [My Copy] Mol Phylogenet Evol, Vol. 5, No. 2. (Apr 1996), pp. 352-8. by M. R. Duvall, B. R. Morton posted to 8728393 acid acids africa alignment amino analysis animals arabidopsis base caenorhabditis carboxylase cattle chain climate coli comparative components d-aspartate-l-isoaspartate data dna drosophila dynamics elegans environment escherichia evolution factors genetic genome geography gluten govt humans mays melanogaster methyltransferase methyltransferases mice molecular non-phs non-us phs phylogeny plant plants poaceae polymerase polymorphism population primers protein rats reaction research ribosomal ribulose-bisphosphate sequence south starch study support synthase time triticum us weight zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:26 as along with 2 groups biodiversity_conservation GrassBase
	Genetic control of branching in foxtail millet. [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 101, No. 24. (Jun 2004), pp. 9045-50. by Andrew N. Doust, Katrien M. Devos, Michael D. Gadberry, Mike D. Gale, Elizabeth A. Kellogg posted to 15184666 analysis base bayes chain chromosome comparative composition conserved data dna evolution expression flowers functions gene genes genetic genome govt leaves likelihood loci mapping models molecular mutation non-phs non-us of phenotype phylogeny physiology plant poaceae polymerase polymorphism primers pseudogenes quantitative reaction regulation research ribosomal rubiaceae sequence setaria spacer study support theorem trait us variance bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:26 as along with 2 groups biodiversity_conservation GrassBase
	Darwin's abominable mystery: Insights from a supertree of the angiosperms. [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 101, No. 7. (Feb 2004), pp. 1904-9. by Jonathan T. Davies, Timothy G. Barraclough, Mark W. Chase, Pamela S. Soltis, Douglas E. Soltis, Vincent Savolainen posted to 14766971 acid analysis angiosperms animals banks basilicum bayes biodiversity biological calibration codon comparative data databases demography diterpenes dna energy environment evolution factors flavonoids fossils genetic genome geography govt intergenic introns lamiaceae linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plastids pollen rays regression reproducibility research results sequence solar specimen study support temperature theorem time transpiration ultraviolet us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:24 as along with 2 groups biodiversity_conservation GrassBase
	A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. [My Copy] Genome Res., Vol. 12, No. 7. (Jul 2002), pp. 1080-90. by Vincent Daubin, Manolo Gouy, Guy Perrière posted to 12097345 acid algorithms alignment alligators analysis and angiosperms animals array artiodactyla b bacterial base bayes behavior biodiversity biology biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computational computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genes genetic genetics genome govt graphics group hibernation homology interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us nucleic oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics structural study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:23 as along with 2 groups biodiversity_conservation GrassBase
	Slipped-strand mispairing in a plastid gene: rpoC2 in grasses (Poaceae). [My Copy] Mol. Biol. Evol., Vol. 11, No. 1. (Jan 1994), pp. 1-8. by M. P. Cummings, L. M. King, E. A. Kellogg posted to 5s 8121278 acid aerobiosis alcohol alignment amino anaerobiosis angiosperms animals arabidopsis base c cell cereals cerevisiae chloroplasts comparative complex conformation cytochrome data dehydrogenase diploidy dna dna-directed electron enzyme evolution expression family fungal fungi gene genes genetic genetics govt group haplotypes homeobox homeodomain homology humans immunoglobulin induction iv kinetics mays models molecular multigene mutation non-phs non-us nucleic nucleus oxygen phs phylogeny plant plants plastids poaceae polymerases polymorphism primers protein proteins region regulation repetitive research ribosomal rna saccharomyces secondary selection sequence sequences species specificity structural structure study support transcription transport triticum us variable variation zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as along with 2 groups biodiversity_conservation GrassBase
	Clann: investigating phylogenetic information through supertree analyses. [My Copy] Bioinformatics, Vol. 21, No. 3. (Feb 2005), pp. 390-2. by C. J. Creevey, J. O. Mcinerney posted to 15374874 acid algorithms analysis animal animals artiodactyla bacteria bacterial biological biology carnivora classification climate cluster comparative computational computer computing data databases decision design dna dolphins drosophila environment evolution extramural female functions fungal fungi gene genetic genome genomics geography govt groups horizontal hybridization interpretation introns likelihood male mathematical models molecular nih non-phs non-us nucleic of pedigree phs phylogeny pinus plant plants population proteins regression reproduction research ribosomal roots ruminants saccharomyces seeds simulation software species specificity statistical study support transfer trees us variance whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as along with 2 groups biodiversity_conservation GrassBase
	Does a tree-like phylogeny only exist at the tips in the prokaryotes? [My Copy] Proc Biol Sci, Vol. 271, No. 1557. (Dec 2004), pp. 2551-8. by Christopher J. Creevey, David A. Fitzpatrick, Gayle K. Philip, et al.Rhoda J. Kinsella, Mary J. O'Connell, Melissa M. Pentony, Simon A. Travers, Mark Wilkinson, James O. Mcinerney posted to 15615680 animal animals artiodactyla bacteria bacterial biology carnivora classification comparative computational computer data databases design dolphins drosophila evolution extramural female functions fungal fungi gene genetic genome genomics govt groups horizontal interpretation introns likelihood male models molecular nih non-phs non-us phs phylogeny plant plants population proteins research ribosomal ruminants saccharomyces simulation species specificity statistical study support transfer us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:21 as along with 2 groups biodiversity_conservation GrassBase

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