Group: Bioinformatics - with tag oligonucleotide [23 articles] Export Sort

Recent papers posted by members of the Bioinformatics group with tag oligonucleotide

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	Role of transposable elements in heterochromatin and epigenetic control. [My Copy] Nature, Vol. 430, No. 6998. (2004), pp. 471-6. by Z. Lippman, A. V. Gendrel, M. Black, et al.M. W. Vaughn, N. Dedhia, W. R. Mccombie, K. Lavine, V. Mittal, B. May, K. D. Kasschau, J. C. Carrington, R. W. Doerge, V. Colot, R. Martienssen posted to sequencesgenetics sequence rna research repeat regulation proteinsgeneticsmetabolism proteinsgenetics plantgenetics plant phs oligonucleotide non-us non-phs methylation interferinggeneticsmetabolism imprinting homeodomain heterochromatingenetics govt genomic geneticgenetics gene factorsgeneticsmetabolism expression epigenesis elementsgenetics dna-binding dna cytosine-5--methyltransferasemetabolism cluster chromosomes array arabidopsisgenetics arabidopsis analysis genome-chromatin us transposable transcription tandem support small by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays [My Copy] Science, Vol. 302, No. 5653. (Dec 2003), pp. 2141-2144. by J. M. Johnson, J. Castle, Garrett P. Engele, et al.Z. Kan, P. M. Loerch, C. D. Armour, R. Santos, E. E. Schadt, R. Stoughton, D. D. Shoemaker posted to 0500 20040107 alternative amyloid analysis array beta-protein cell chain coa complementary curve data distribution dna exons expressed genome human humans hydrolases hydroxymethylglutaryl isoformsanalysis line molecular monoester oligonucleotide phosphoric polymerase precursoranalysisgenetics precursorsgenetics protein proteinsanalysisgenetics reaction reductasesanalysisgenetics reverse rna roc sequence splicing tags tissue transcriptase by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Stochastic models inspired by hybridization theory for short oligonucleotide arrays [My Copy] J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893. by Z. Wu, R. A. Irizarry posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	The transcriptional activity of human Chromosome 22 [My Copy] Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540. by J. L. Rinn, G. Euskirchen, P. Bertone, et al.R. Martone, N. M. Luscombe, S. Hartman, P. M. Harrison, F. K. Nelson, P. Miller, M. Gerstein, S. Weissman, M. Snyder posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as
	Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102. by J. M. Johnson, S. Edwards, D. Shoemaker, E. E. Schadt posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	Empirical analysis of transcriptional activity in the Arabidopsis genome [My Copy] Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846. by K. Yamada, J. Lim, J. M. Dale, et al.H. Chen, P. Shinn, C. J. Palm, A. M. Southwick, H. C. Wu, C. Kim, M. Nguyen, P. Pham, R. Cheuk, Karlin G. Newmann, S. X. Liu, B. Lam, H. Sakano, T. Wu, G. Yu, M. Miranda, H. L. Quach, M. Tripp, C. H. Chang, J. M. Lee, M. Toriumi, M. M. Chan, C. C. Tang, C. S. Onodera, J. M. Deng, K. Akiyama, Y. Ansari, T. Arakawa, J. Banh, F. Banno, L. Bowser, S. Brooks, P. Carninci, Q. Chao, N. Choy, A. Enju, A. D. Goldsmith, M. Gurjal, N. F. Hansen, Y. Hayashizaki, Johnson C. Hopson, V. W. Hsuan, K. Iida, M. Karnes, S. Khan, E. Koesema, J. Ishida, P. X. Jiang, T. Jones, J. Kawai, A. Kamiya, C. Meyers, M. Nakajima, M. Narusaka, M. Seki, T. Sakurai, M. Satou, R. Tamse, M. Vaysberg, E. K. Wallender, C. Wong, Y. Yamamura, S. Yuan, K. Shinozaki, R. W. Davis, A. Theologis, J. R. Ecker posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as
	Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 [My Copy] Genome Res, Vol. 14, No. 3. (Mar 2004), pp. 331-342. by D. Kampa, J. Cheng, P. Kapranov, et al.M. Yamanaka, S. Brubaker, S. Cawley, J. Drenkow, A. Piccolboni, S. Bekiranov, G. Helt, H. Tammana, T. R. Gingeras posted to 0500 20040318 21genetics 22genetics analysismethods array cell cellschemistrymetabolism chromosome chromosomes data dna expression gene genes geneticgenetics govt human humans jurkat line mappingmethods messengergenetics molecular neoplasmgenetics non-us oligonucleotide pair phs probesgenetics profilingmethods research rna rnagenetics sequence structural structuralgenetics support transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:48 as
	Global identification of human transcribed sequences with genome tiling arrays [My Copy] Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246. by P. Bertone, V. Stolc, T. E. Royce, et al.J. S. Rozowsky, A. E. Urban, X. Zhu, J. L. Rinn, W. Tongprasit, M. Samanta, S. Weissman, M. Gerstein, M. Snyder posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as
	Experimental annotation of the human genome using microarray technology [My Copy] Nature, Vol. 409, No. 6822. (Feb 2001), pp. 922-927. by D. D. Shoemaker, E. E. Schadt, C. D. Armour, et al.Y. D. He, Garrett P. Engele, P. D. Mcdonagh, P. M. Loerch, A. Leonardson, P. Y. Lum, G. Cavet, L. F. Wu, S. J. Altschuler, S. Edwards, J. King, J. S. Tsang, G. Schimmack, J. M. Schelter, J. Koch, M. Ziman, M. J. Marton, B. Li, P. Cundiff, T. Ward, J. Castle, M. Krolewski, M. R. Meyer, M. Mao, J. Burchard, M. J. Kidd, H. Dai, J. W. Phillips, P. S. Linsley, R. Stoughton, S. Scherer, M. S. Boguski posted to 1001 20010327 22 algorithms alternative analysis array biology cell chromosomes complementary computational dna exons genome human humans line oligonucleotide pair probes project sequence splicing by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as
	A comprehensive transcript index of the human genome generated using microarrays and computational approaches [My Copy] Genome Biol, Vol. 5, No. 10. (2004) by E. E. Schadt, S. W. Edwards, D. Guhathakurta, et al.D. Holder, L. Ying, V. Svetnik, A. Leonardson, K. W. Hart, A. Russell, G. Li, G. Cavet, J. Castle, P. Mcdonagh, Z. Kan, R. Chen, A. Kasarskis, M. Margarint, R. M. Caceres, J. M. Johnson, C. D. Armour, Garrett P. W. Engele, N. F. Tsinoremas, D. D. Shoemaker posted to 0900 20050729 20genetics 22genetics analysis and array biology chromosomes computational conserved expression gene geneticgenetics genome human humans of oligonucleotide organ pair profiling reproducibility results sensitivity sequence sequencegenetics specificity transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as
	Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data [My Copy] Genome Res, Vol. 12, No. 8. (Aug 2002), pp. 1286-1293. by H. Kochiwa, R. Suzuki, T. Washio, et al.R. Saito, H. Bono, P. Carninci, Y. Okazaki, R. Miki, Y. Hayashizaki, M. Tomita posted to 1001 20020907 alternative analysis analysisstatistics animals array cluster complementarygenetics data databases dna expression forecastingmethods gene geneticgenetics geneticstatistics govt library mice non-us numerical oligonucleotide profilingstatistics regulationgenetics research sequence splicinggenetics support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:44 as
	Applications of DNA tiling arrays for whole-genome analysis [My Copy] Genomics, Vol. 85, No. 1. (Jan 2005), pp. 1-15. by T. C. Mockler, S. Chan, A. Sundaresan, H. Chen, S. E. Jacobsen, J. R. Ecker posted to 0900 20050623 analysismethodstrends animals array chromatin dna expression extramural gene geneticgenetics genome genotype govt humans immunoprecipitationmethodstrends methylation nih non-phs oligonucleotide phs polymorphism profilingmethodstrends research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:40 as
	Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping [My Copy] Trends Genet, Vol. 21, No. 8. (Aug 2005), pp. 466-475. by T. E. Royce, J. S. Rozowsky, P. Bertone, et al.M. Samanta, V. Stolc, S. Weissman, M. Snyder, M. Gerstein posted to 0900 20050915 algorithms analysismethodsstatistics array base biology comparative computational data dnagenetics extramural genetic govt humans molecular nih numerical oligonucleotide phs probes research sequence study support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as
	A gene expression map for the euchromatic genome of Drosophila melanogaster [My Copy] Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660. by V. Stolc, Z. Gauhar, C. Mason, et al.G. Halasz, M. F. van Batenburg, S. A. Rifkin, S. Hua, T. Herreman, W. Tongprasit, P. E. Barbano, H. J. Bussemaker, K. P. White posted to 0900 20041216 algorithms analysis animals array biology computational cycle development dna drosophila drosophilagenetics evolution exons expression female gene genes genetic genome govt insect intergenic introns life male melanogastergeneticsgrowth molecular non-phs non-us oligonucleotide phs probes profiling proteinsgeneticsphysiology research rna sequence splicing stages support synteny transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:04 as
	A genomic view of alternative splicing [My Copy] Nat Genet, Vol. 30, No. 1. (Jan 2002), pp. 13-19. by B. Modrek, C. Lee posted to 1001 20020205 alternative analysis animals array biology computational dnagenetics expressed false forecasting genetics genomics govt humans isoformsgenetics messengergenetics non-phs oligonucleotide positive protein reactions research rna sequence splicing support tags us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	Large-scale transcriptional activity in chromosomes 21 and 22 [My Copy] Science, Vol. 296, No. 5569. (May 2002), pp. 916-919. by P. Kapranov, S. E. Cawley, J. Drenkow, et al.S. Bekiranov, R. L. Strausberg, S. P. Fodor, T. R. Gingeras posted to 1001 20020531 21genetics 22genetics analysis array biology cell cells chain chromosome chromosomes complementary computational contig cultured cytosolmetabolism digeorge dna exons genetic govt human line mapping messengergeneticsmetabolism non-us nucleusmetabolism oligonucleotide pair phs physical polymerase probes reaction reverse rna sequence support syndromegenetics transcriptase transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:33 as
	Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 68, No. 1 Pt 1. (Jul 2003) by F. Naef, M. O. Magnasco posted to 0500 20040527 analysismethods array base biophysics biotinylation data human messengermetabolism models molecular oligonucleotide rna rnachemistry sequence statistical by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:32 as
	Resolution of a supertree/supermatrix paradox. [My Copy] Syst Biol, Vol. 51, No. 4. (Aug 2002), pp. 652-64. by John Gatesy, Conrad Matthee, Rob Desalle, Cheryl Hayashi posted to 14530139 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees. [My Copy] Syst Biol, Vol. 52, No. 6. (Dec 2003), pp. 839-48. by Olaf posted to 14668120 algorithms alignment alligators analysis and angiosperms animals array biodiversity calibration carnivora classification cluster comparative computer crocodiles data design dna evolution factors fossils genetic genetics govt graphics interface interpretation meta-analysis models molecular mutational non-phs non-us oligonucleotide pedigree phylogeny population re research search sequence simulation software statistical study support theoretical time us user-computer variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase
	Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. [My Copy] Syst Biol, Vol. 50, No. 4. (Aug 2001), pp. 565-79. by Bininda O. R. Emonds, M. J. Sanderson posted to 12116654 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as along with 2 groups biodiversity_conservation GrassBase
	A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. [My Copy] Genome Res., Vol. 12, No. 7. (Jul 2002), pp. 1080-90. by Vincent Daubin, Manolo Gouy, Guy Perrière posted to 12097345 acid algorithms alignment alligators analysis and angiosperms animals array artiodactyla b bacterial base bayes behavior biodiversity biology biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computational computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genes genetic genetics genome govt graphics group hibernation homology interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us nucleic oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics structural study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:23 as along with 2 groups biodiversity_conservation GrassBase
	Rainbow: a toolbox for phylogenetic supertree construction and analysis. [My Copy] Bioinformatics, Vol. 20, No. 16. (Nov 2004), pp. 2872-3. by D. Chen, O. Eulenstein, Fernández D. Baca posted to 15145807 algorithms alignment alligators analysis and animals array classification cluster comparative computer crocodiles data design dna govt graphics interface interpretation meta-analysis mutational non-phs oligonucleotide phylogeny research sequence simulation software statistical study support us user-computer bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:20 as along with 2 groups biodiversity_conservation GrassBase
	A phylogeny of the tinamous (aves: palaeognathiformes) based on integumentary characters. [My Copy] Syst Biol, Vol. 51, No. 6. (Dec 2002), pp. 959-79. by Sara Bertelli, Norberto P. Giannini, Pablo A. Goloboff posted to 12554461 algorithms alignment alligators analysis and angiosperms animals array b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:08 as along with 2 groups biodiversity_conservation GrassBase

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Group: Bioinformatics - with tag oligonucleotide [23 articles] Export Sort

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