Group: Bioinformatics - with tag phylogeny [61 articles] Export

Recent papers posted by members of the Bioinformatics group with tag phylogeny

	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to correlated_mutations phylogeny protein_protein review by barry to the group Bioinformatics on 2008-10-02 20:24:17 as along with 8 people and 2 groups chica biomcgary qluo balicea grahamc fhsantanna marti sjcockell structural_bioinformatics McCammon
	Tracing evolutionary pressure [My Copy] Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 908-915. by Kai Ye, Gert Vriend, Adriaan P. Ijzerman posted to bioinf_methods phylogeny protein_evolution protein_sequence residue_annotation by barry to the group Bioinformatics on 2008-04-11 19:13:22 as along with 2 people and 1 group sunhwan gulkur structural_bioinformatics
	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted to 2007 comparative_genomics drosophila evolution phylogeny by hpaces to the group Bioinformatics on 2007-11-20 17:56:54 as along with 37 people and 4 groups aaltenburger biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo EisenLab Mycology BergmanLab Drosophila-Genetics-Genomics-2008
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	Bushes in the Tree of Life [My Copy] PLoS Biology, Vol. 4, No. 11. (1 November 2006), e352. by Antonis Rokas, Sean B. Carroll posted to bushes evolution homoplasy phylogenomics phylogeny by kehan to the group Bioinformatics on 2007-01-02 13:18:22 as along with 2 people and 3 groups emilyhare timothee biodiversity_conservation EisenLab GrassBase
	A "Holistic" Kinesin Phylogeny Reveals New Kinesin Families and Predicts Protein Functions. [My Copy] Mol Biol Cell (15 February 2006) by Bill Wickstead, Keith Gull posted to kinesin molecular_motors phylogeny protein_sequence by barry to the group Bioinformatics on 2006-11-29 00:42:26 as along with 1 person and 1 group kristophe structural_bioinformatics
	Gene identification in novel eukaryotic genomes by self-training algorithm [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506. by A. Lomsadze, Ter V. Hovhannisyan, Y. O. Chernoff, M. Borodovsky posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Gene finding with a hidden Markov model of genome structure and evolution [My Copy] Bioinformatics, Vol. 19, No. 2. (Jan 2003), pp. 219-227. by J. S. Pedersen, J. Hein posted to 0500 20030828 algorithms alignmentmethods analysis animals chains computer dnamethods evolution genetic genome govt homology humans markov mice models molecular non-us phylogeny processes research sequence simulation statistical stochastic support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:58 as
	Evaluation of gene-finding programs on mammalian sequences [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 817-832. by S. Rogic, A. K. Mackworth, F. B. Ouellette posted to 1001 20010629 analysis animals base comparative composition cytosineanalysis dnamethods exonsgenetics functions genes genetic govt guanineanalysis human likelihood models non-us phylogeny sequence software species specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:49 as
	Comparative analyses of multi-species sequences from targeted genomic regions [My Copy] Nature, Vol. 424, No. 6950. (Aug 2003), pp. 788-793. by J. W. Thomas, J. W. Touchman, R. W. Blakesley, et al.G. G. Bouffard, Beckstrom S. M. Sternberg, E. H. Margulies, M. Blanchette, A. C. Siepel, P. J. Thomas, J. C. Mcdowell, B. Maskeri, N. F. Hansen, M. S. Schwartz, R. J. Weber, W. J. Kent, D. Karolchik, T. C. Bruen, R. Bevan, D. J. Cutler, S. Schwartz, L. Elnitski, J. R. Idol, A. B. Prasad, Lee S. Q. Lin, V. V. Maduro, T. J. Summers, M. E. Portnoy, N. L. Dietrich, N. Akhter, K. Ayele, B. Benjamin, K. Cariaga, C. P. Brinkley, S. Y. Brooks, S. Granite, X. Guan, J. Gupta, P. Haghighi, S. L. Ho, M. C. Huang, E. Karlins, P. L. Laric, R. Legaspi, M. J. Lim, Q. L. Maduro, C. A. Masiello, S. D. Mastrian, J. C. Mccloskey, R. Pearson, S. Stantripop, E. E. Tiongson, J. T. Tran, C. Tsurgeon, J. L. Vogt, M. A. Walker, K. D. Wetherby, L. S. Wiggins, A. C. Young, L. H. Zhang, K. Osoegawa, B. Zhu, B. Zhao, C. L. Shu, P. J. De Jong, C. E. Lawrence, A. F. Smit, A. Chakravarti, D. Haussler, P. Green, W. Miller, E. D. Green posted to 0500 20030822 7genetics acid alignment animals chromosomes comparative conductance conserved cystic dna elementsgenetics evolution fibrosis genome genomics govt homology human mammalsgenetics molecular mutagenesisgenetics non-us nucleic pair phs phylogeny regulatorgenetics sequence sequencegenetics species specificity study support transmembrane transposable us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:44 as
	Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae [My Copy] Nucleic Acids Res, Vol. 30, No. 5. (Mar 2002), pp. 1233-1239. by C. T. Webb, S. A. Shabalina, A. Y. Ogurtsov, A. S. Kondrashov posted to 1001 20020312 acid analysis animals base caenorhabditis caenorhabditisgenetics comparative data dna elegansgenetics gc govt helminthanalysis homology intergenic molecular nucleic phs phylogeny regions rich sequence species specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:43 as
	PygmyBrowse: a small screen tree browser [My Copy] In CHI '06: CHI '06 extended abstracts on Human factors in computing systems (2006), pp. 514-519. by Zvi Band, Ryen W. White posted to ajax browse classification page phylogeny pygmy rod by kehan to the group Bioinformatics on 2006-09-25 15:34:28 as along with 2 groups biodiversity_conservation GrassBase
	Phylogeny and Subfamilial Classification of the Grasses (Poaceae) [My Copy] Annals of the Missouri Botanical Garden, Vol. 88, No. 3. (2001), pp. 373-457. by Grass, Nigel P. Barker, Lynn G. Clark, et al.Jerrold I. Davis, Melvin R. Duvall, Gerald F. Guala, Catherine Hsiao, Elizabeth A. Kellogg, Peter H. Linder posted to classification gpwg grass grasses group phylogeny poaceae working by kehan to the group Bioinformatics on 2006-08-22 17:07:06 as along with 2 groups biodiversity_conservation GrassBase
	Evidence That Rice and Other Cereals Are Ancient Aneuploids [My Copy] Plant Cell, Vol. 15, No. 9. (1 September 2003), pp. 2192-2202. by Klaas Vandepoele, Cedric Simillion, Yves Van de Peer posted to aneuploidy ceareal graminea grass history oryzeae phylogeny poaceae by kehan to the group Bioinformatics on 2006-07-19 10:52:29 as along with 2 groups biodiversity_conservation GrassBase
	Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions. [My Copy] Mol Phylogenet Evol, Vol. 25, No. 2. (Nov 2002), pp. 341-60. by Peter Goldblatt, Vincent Savolainen, Obie Porteous, et al.Ivan Sostaric, Martyn Powell, Gail Reeves, John C. Manning, Timothy G. Barraclough, Mark W. Chase posted to 414315 acid allocation analysis angiosperms animals bacterial banks basilicum bayes biodiversity biological birds calibration carboxylase chain classification codon comparative cooperation data databases demography diterpenes dna ecosystem energy environment european evolution factors financial flavonoids fossils functions fungal genes genetic genetics genome geography govt hybridization insects intergenic international interpretation introns iridaceae lamiaceae likelihood linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plants plastids pollen polymerase proteins random rays reaction regression reproducibility research results ribosomal ribulose-bisphosphate sequence solar spacer specimen states statistical study support temperature theorem time tobacco transpiration ultraviolet union united us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Resolution of a supertree/supermatrix paradox. [My Copy] Syst Biol, Vol. 51, No. 4. (Aug 2002), pp. 652-64. by John Gatesy, Conrad Matthee, Rob Desalle, Cheryl Hayashi posted to 14530139 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 342-55. by John Gatesy, Richard H. Baker, Cheryl Hayashi posted to 15205059 alligators and animals classification comparative crocodiles data design interpretation meta-analysis phylogeny research statistical study bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Hidden likelihood support in genomic data: can forty-five wrongs make a right? [My Copy] Syst Biol, Vol. 54, No. 3. (Jun 2005), pp. 483-92. by John Gatesy, Richard H. Baker posted to 16012113 animals artiodactyla biology classification comparative computational data dolphins evolution extramural female functions fungal genetic genome govt interpretation likelihood male models nih non-phs non-us phs phylogeny research saccharomyces species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	A complete estimate of the phylogenetic relationships in Ruminantia: a dated species-level supertree of the extant ruminants. [My Copy] Biol Rev Camb Philos Soc, Vol. 80, No. 2. (May 2005), pp. 269-302. by Manuel H. Fernández, Elisabeth S. Vrba posted to 15921052 animals evolution female govt male non-us phylogeny research ruminants species specificity support bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. [My Copy] Mol Phylogenet Evol, Vol. 17, No. 3. (Dec 2000), pp. 388-400. by R. C. Evans, L. A. Alice, C. S. Campbell, E. A. Kellogg, T. A. Dickinson posted to 11133193 alignment analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny synthase theorem trait us variance variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Performance of flip supertree construction with a heuristic algorithm. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 299-308. by Oliver Eulenstein, Duhong Chen, Gordon J. Burleigh, David F. Baca, Michael J. Sanderson posted to 15205054 algorithms alligators and animals classification comparative computer crocodiles data design govt interpretation meta-analysis non-phs phylogeny research simulation statistical study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees. [My Copy] Syst Biol, Vol. 52, No. 6. (Dec 2003), pp. 839-48. by Olaf posted to 14668120 algorithms alignment alligators analysis and angiosperms animals array biodiversity calibration carnivora classification cluster comparative computer crocodiles data design dna evolution factors fossils genetic genetics govt graphics interface interpretation meta-analysis models molecular mutational non-phs non-us oligonucleotide pedigree phylogeny population re research search sequence simulation software statistical study support theoretical time us user-computer variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase
	Supertree construction in the genomic age. [My Copy] Methods Enzymol, Vol. 395 (2005), pp. 745-57. by Olaf posted to 15865993 animals artiodactyla biology carnivora classification comparative computational computer data databases design dolphins evolution extramural female functions fungal genetic genome genomics govt interpretation likelihood male models nih non-phs non-us phs phylogeny research ruminants saccharomyces simulation species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase
	Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. [My Copy] Syst Biol, Vol. 50, No. 4. (Aug 2001), pp. 565-79. by Bininda O. R. Emonds, M. J. Sanderson posted to 12116654 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as along with 2 groups biodiversity_conservation GrassBase
	Building large trees by combining phylogenetic information: a complete phylogeny of the extant Carnivora (Mammalia). [My Copy] Biol Rev Camb Philos Soc, Vol. 74, No. 2. (May 1999), pp. 143-75. by Bininda O. R. Emonds, J. L. Gittleman, A. Purvis posted to 10396181 alligators and animal animals behavior biometry birds carnivora comparative competitive crocodiles female govt male mammals muscles non-us phylogeny ratio research schistosoma schistosomatidae sex software study support testis bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as along with 2 groups biodiversity_conservation GrassBase
	Factors influencing phylogenetic inference: a case study using the mammalian carnivores. [My Copy] Mol Phylogenet Evol, Vol. 16, No. 1. (Jul 2000), pp. 113-26. by Bininda O. R. Emonds posted to 10877944 animals biometry carnivora comparative govt non-us phylogeny research study support bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as along with 2 groups biodiversity_conservation GrassBase
	Eukaryotic evolution, changes and challenges. [My Copy] Nature, Vol. 440, No. 7084. (Mar 2006), pp. 623-630. by Martin T. Embley, William Martin posted to 16572163 cells eukaryotic evolution hydrogen mitochondria phylogeny prokaryotic bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as along with 2 groups biodiversity_conservation GrassBase
	Molecular phylogenetics of Poaceae: an expanded analysis of rbcL sequence data. [My Copy] Mol Phylogenet Evol, Vol. 5, No. 2. (Apr 1996), pp. 352-8. by M. R. Duvall, B. R. Morton posted to 8728393 acid acids africa alignment amino analysis animals arabidopsis base caenorhabditis carboxylase cattle chain climate coli comparative components d-aspartate-l-isoaspartate data dna drosophila dynamics elegans environment escherichia evolution factors genetic genome geography gluten govt humans mays melanogaster methyltransferase methyltransferases mice molecular non-phs non-us phs phylogeny plant plants poaceae polymerase polymorphism population primers protein rats reaction research ribosomal ribulose-bisphosphate sequence south starch study support synthase time triticum us weight zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:26 as along with 2 groups biodiversity_conservation GrassBase
	Genetic control of branching in foxtail millet. [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 101, No. 24. (Jun 2004), pp. 9045-50. by Andrew N. Doust, Katrien M. Devos, Michael D. Gadberry, Mike D. Gale, Elizabeth A. Kellogg posted to 15184666 analysis base bayes chain chromosome comparative composition conserved data dna evolution expression flowers functions gene genes genetic genome govt leaves likelihood loci mapping models molecular mutation non-phs non-us of phenotype phylogeny physiology plant poaceae polymerase polymorphism primers pseudogenes quantitative reaction regulation research ribosomal rubiaceae sequence setaria spacer study support theorem trait us variance bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:26 as along with 2 groups biodiversity_conservation GrassBase
	Environmental energy and evolutionary rates in flowering plants. [My Copy] Proc Biol Sci, Vol. 271, No. 1553. (Oct 2004), pp. 2195-200. by Jonathan T. Davies, Vincent Savolainen, Mark W. Chase, Justin Moat, Timothy G. Barraclough posted to 15475341 analysis angiosperms biodiversity comparative demography energy environment evolution genetic geography govt linear models molecular non-us phylogeny plant rays regression research solar study support temperature transpiration ultraviolet bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:24 as along with 2 groups biodiversity_conservation GrassBase
	Environmental causes for plant biodiversity gradients. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 359, No. 1450. (Oct 2004), pp. 1645-56. by Jonathan T. Davies, Timothy G. Barraclough, Vincent Savolainen, Mark W. Chase posted to 15519979 angiosperms biodiversity comparative demography energy environment evolution genetic geography govt models molecular non-us phylogeny plant rays research solar study support temperature transpiration ultraviolet bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:24 as along with 2 groups biodiversity_conservation GrassBase
	Darwin's abominable mystery: Insights from a supertree of the angiosperms. [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 101, No. 7. (Feb 2004), pp. 1904-9. by Jonathan T. Davies, Timothy G. Barraclough, Mark W. Chase, Pamela S. Soltis, Douglas E. Soltis, Vincent Savolainen posted to 14766971 acid analysis angiosperms animals banks basilicum bayes biodiversity biological calibration codon comparative data databases demography diterpenes dna energy environment evolution factors flavonoids fossils genetic genome geography govt intergenic introns lamiaceae linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plastids pollen rays regression reproducibility research results sequence solar specimen study support temperature theorem time transpiration ultraviolet us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:24 as along with 2 groups biodiversity_conservation GrassBase
	A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. [My Copy] Genome Res., Vol. 12, No. 7. (Jul 2002), pp. 1080-90. by Vincent Daubin, Manolo Gouy, Guy Perrière posted to 12097345 acid algorithms alignment alligators analysis and angiosperms animals array artiodactyla b bacterial base bayes behavior biodiversity biology biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computational computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genes genetic genetics genome govt graphics group hibernation homology interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us nucleic oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics structural study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:23 as along with 2 groups biodiversity_conservation GrassBase
	Slipped-strand mispairing in a plastid gene: rpoC2 in grasses (Poaceae). [My Copy] Mol. Biol. Evol., Vol. 11, No. 1. (Jan 1994), pp. 1-8. by M. P. Cummings, L. M. King, E. A. Kellogg posted to 5s 8121278 acid aerobiosis alcohol alignment amino anaerobiosis angiosperms animals arabidopsis base c cell cereals cerevisiae chloroplasts comparative complex conformation cytochrome data dehydrogenase diploidy dna dna-directed electron enzyme evolution expression family fungal fungi gene genes genetic genetics govt group haplotypes homeobox homeodomain homology humans immunoglobulin induction iv kinetics mays models molecular multigene mutation non-phs non-us nucleic nucleus oxygen phs phylogeny plant plants plastids poaceae polymerases polymorphism primers protein proteins region regulation repetitive research ribosomal rna saccharomyces secondary selection sequence sequences species specificity structural structure study support transcription transport triticum us variable variation zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as along with 2 groups biodiversity_conservation GrassBase
	Clann: investigating phylogenetic information through supertree analyses. [My Copy] Bioinformatics, Vol. 21, No. 3. (Feb 2005), pp. 390-2. by C. J. Creevey, J. O. Mcinerney posted to 15374874 acid algorithms analysis animal animals artiodactyla bacteria bacterial biological biology carnivora classification climate cluster comparative computational computer computing data databases decision design dna dolphins drosophila environment evolution extramural female functions fungal fungi gene genetic genome genomics geography govt groups horizontal hybridization interpretation introns likelihood male mathematical models molecular nih non-phs non-us nucleic of pedigree phs phylogeny pinus plant plants population proteins regression reproduction research ribosomal roots ruminants saccharomyces seeds simulation software species specificity statistical study support transfer trees us variance whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as along with 2 groups biodiversity_conservation GrassBase
	Does a tree-like phylogeny only exist at the tips in the prokaryotes? [My Copy] Proc Biol Sci, Vol. 271, No. 1557. (Dec 2004), pp. 2551-8. by Christopher J. Creevey, David A. Fitzpatrick, Gayle K. Philip, et al.Rhoda J. Kinsella, Mary J. O'Connell, Melissa M. Pentony, Simon A. Travers, Mark Wilkinson, James O. Mcinerney posted to 15615680 animal animals artiodactyla bacteria bacterial biology carnivora classification comparative computational computer data databases design dolphins drosophila evolution extramural female functions fungal fungi gene genetic genome genomics govt groups horizontal interpretation introns likelihood male models molecular nih non-phs non-us phs phylogeny plant plants population proteins research ribosomal ruminants saccharomyces simulation species specificity statistical study support transfer us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:21 as along with 2 groups biodiversity_conservation GrassBase
	Rainbow: a toolbox for phylogenetic supertree construction and analysis. [My Copy] Bioinformatics, Vol. 20, No. 16. (Nov 2004), pp. 2872-3. by D. Chen, O. Eulenstein, Fernández D. Baca posted to 15145807 algorithms alignment alligators analysis and animals array classification cluster comparative computer crocodiles data design dna govt graphics interface interpretation meta-analysis mutational non-phs oligonucleotide phylogeny research sequence simulation software statistical study support us user-computer bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:20 as along with 2 groups biodiversity_conservation GrassBase
	Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae). [My Copy] Ann Bot (Lond), Vol. 92, No. 1. (Jul 2003), pp. 107-27. by Mark W. Chase, Sandra Knapp, Antony V. Cox, et al.James J. Clarkson, Yelena Butsko, Jeffrey Joseph, Vincent Savolainen, Alex S. Parokonny posted to 12824072 acid analysis angiosperms animals banks basilicum bayes biodiversity biological calibration carboxylase chain classification codon comparative cooperation data databases demography diterpenes dna ecosystem energy environment european evolution factors financial flavonoids fossils genetic genetics genome geography govt hybridization intergenic international introns lamiaceae linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plants plastids pollen polymerase proteins rays reaction regression reproducibility research results ribosomal ribulose-bisphosphate sequence solar spacer specimen states study support temperature theorem time tobacco transpiration ultraviolet union united us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:17 as along with 2 groups biodiversity_conservation GrassBase
	Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. [My Copy] Mol Phylogenet Evol, Vol. 8, No. 2. (Oct 1997), pp. 150-66. by P. Catalán, E. A. Kellogg, R. G. Olmstead posted to 9299221 acid amino angiosperms animals base chloroplasts comparative data dna evolution family fungi genes genetic genetics govt homeobox homeodomain homology humans models molecular multigene non-phs non-us phylogeny plant poaceae primers protein proteins research secondary sequence structure study support us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:17 as along with 2 groups biodiversity_conservation GrassBase
	Effects of oxygen concentration on the expression of cytochrome c and cytochrome c oxidase genes in yeast. [My Copy] J. Biol. Chem., Vol. 272, No. 23. (Jun 1997), pp. 14705-12. by P. V. Burke, D. C. Raitt, L. A. Allen, E. A. Kellogg, R. O. Poyton posted to induction iv kinetics mays models molecular multigene non-phs non-us nucleus oxygen phs phylogeny plant plants poaceae primers protein proteins regulation research saccharomyces secondary sequence structure study support transcription transport us variation zea bibtex-import 9169434 acid aerobiosis amino anaerobiosis angiosperms animals base c cell cerevisiae chloroplasts comparative complex cytochrome data dna electron enzyme evolution expression family fungal fungi gene genes genetic genetics govt group homeobox homeodomain homology humans by kehan to the group Bioinformatics on 2006-07-13 16:23:16 as along with 2 groups biodiversity_conservation GrassBase
	Zea systematics: ribosomal ITS evidence. [My Copy] Mol. Biol. Evol., Vol. 13, No. 4. (Apr 1996), pp. 612-22. by E. S. Buckler, T. P. Holtsford posted to 8882504 acid acids africa alignment amino analysis animals arabidopsis base caenorhabditis cattle climate coli comparative components d-aspartate-l-isoaspartate data dna drosophila dynamics elegans environment escherichia evolution factors genetic genome geography gluten govt humans mays melanogaster methyltransferase methyltransferases mice molecular non-phs non-us phs phylogeny plant poaceae polymorphism population protein rats research ribosomal sequence south starch study support synthase time triticum us weight zea bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:15 as along with 2 groups biodiversity_conservation GrassBase
	Environment. Biodiversity update--progress in taxonomy. [My Copy] Science, Vol. 298, No. 5592. (Oct 2002) by Stephen Blackmore posted to 12376687 analysis and animals banks biodiversity biological biology classification computational conservation cooperation cost costs countries databases demography developed developing ecosystem environment evolution factual financial geography international natural of phylogeny plants resources specimen support bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:14 as along with 2 groups biodiversity_conservation GrassBase
	Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa? [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 94, No. 25. (Dec 1997), pp. 13749-53. by G. Bharathan, B. J. Janssen, E. A. Kellogg, N. Sinha posted to 9391098 acid amino angiosperms animals comparative data evolution family fungi genes genetic govt homeobox homeodomain homology humans models molecular multigene non-phs non-us phylogeny protein proteins research secondary sequence structure study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:13 as along with 2 groups biodiversity_conservation GrassBase
	Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins. [My Copy] Mol. Biol. Evol., Vol. 16, No. 4. (Apr 1999), pp. 553-63. by G. Bharathan, B. J. Janssen, E. A. Kellogg, N. Sinha posted to trait us variance variation bibtex-import synthase 10331280 acid alignment amino analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules homeobox homeodomain homology leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny theorem by kehan to the group Bioinformatics on 2006-07-13 16:23:11 as along with 2 groups biodiversity_conservation GrassBase
	A phylogeny of the tinamous (aves: palaeognathiformes) based on integumentary characters. [My Copy] Syst Biol, Vol. 51, No. 6. (Dec 2002), pp. 959-79. by Sara Bertelli, Norberto P. Giannini, Pablo A. Goloboff posted to 12554461 algorithms alignment alligators analysis and angiosperms animals array b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:08 as along with 2 groups biodiversity_conservation GrassBase
	Do Plants Have a One-Way Ticket to Genomic Obesity? [My Copy] Plant Cell, Vol. 9, No. 9. (Sep 1997), pp. 1509-1514. by J. L. Bennetzen, E. A. Kellogg posted to 12237393 analysis arabidopsis base bayes cerevisiae chain chromosome comparative composition conserved crosses data developmental dna duplicate duplication evolution expression flowers functions fungal gene genes genetic genome genotype govt leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers pseudogenes quantitative reaction regulation research ribosomal rubiaceae saccharomyces sequence setaria spacer species specificity study support synteny theorem trait us variance bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:08 as along with 2 groups biodiversity_conservation GrassBase
	Reply. [My Copy] Plant Cell, Vol. 9, No. 11. (Nov 1997), pp. 1901-1902. by J. L. Bennetzen, E. A. Kellogg posted to genetic genome genotype govt leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase 12237351 analysis arabidopsis base bayes cerevisiae chain chromosome comparative composition conserved crosses data developmental dna polymorphism polyploidy primers pseudogenes quantitative reaction regulation research ribosomal rubiaceae saccharomyces sequence setaria spacer species specificity study support synteny theorem trait us variance bibtex-import duplicate duplication evolution expression flowers functions fungal gene genes by kehan to the group Bioinformatics on 2006-07-13 16:23:01 as along with 2 groups biodiversity_conservation GrassBase
	Phylogeny, biogeography, and the evolution of life-history traits in Leucadendron (Proteaceae). [My Copy] Mol Phylogenet Evol, Vol. 33, No. 3. (Dec 2004), pp. 845-60. by Nigel P. Barker, Alain Vanderpoorten, Cynthia M. Morton, John P. Rourke posted to 15522808 acyclovir agents analysis antiviral debridement dna evolution factors functions geography govt herpetic humans interferons keratitis likelihood molecular non-us phylogeny pollen prednisolone proteaceae recurrence research ribosomal sequence spacer support time bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:22:59 as along with 2 groups biodiversity_conservation GrassBase
	A new phylogenetic classification of the palm family, Arecaceae [My Copy] Kew Bulletin, Vol. 60 (2005) by John Dransfield, Natalie W. Uhl, Conny B. Asmussen, William J. Baker, Madeline M. Harley, Carl E. Lewis posted to arecaceae classification palmae phylogeny suprageneric bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:14:16 as along with 2 groups biodiversity_conservation GrassBase
	Modelling the recent common ancestry of all living humans. [My Copy] Nature, Vol. 431, No. 7008. (30 September 2004), pp. 562-566. by Douglas L. Rohde, Steve Olson, Joseph T. Chang posted to evolution homo human phylogenomics phylogeny sapiens by kehan to the group Bioinformatics on 2006-07-10 12:05:18 as along with 6 people and 3 groups skoch3 inbetweener dahnielson balicea bpacker larios biodiversity_conservation vision-ng GrassBase

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evolution	388
plant	123
bioinformatics	104
software	95
alignment	91
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phylogenetics	57
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article	40
c_elegans	40
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method	34
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these	21
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data-mining	20
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francisella	12
homology	12
microbial-ecology	12
microeukaryotes	12
networks	12
prokaryotes	12
proteome	12

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