Group: Bioinformatics - with tag protein [93 articles] Export

Recent papers posted by members of the Bioinformatics group with tag protein

	The Modular Organization of Protein Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000523. by José M. Peregrín-Alvarez, Xuejian Xiong, Chong Su, John Parkinson posted to protein organisation modular interactions coli by dswan to the group Bioinformatics on 2009-10-02 16:49:40 as along with 6 people and 1 group venancio CorinYeats biomcgary grahamc kiekyon poirel Orengo Group Journal Picks
	The limits of protein sequence comparison? [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 254-260. by William R. Pearson, Michael L. Sierk posted to sequence review protein comparison bioinformatics by svozil to the group Bioinformatics on 2009-08-17 08:25:59 as along with 3 people richardbickerton yylin BioNica
	Clustered microRNAs' coordination in regulating protein-protein interaction network [My Copy] BMC Systems Biology, Vol. 3, No. 1. (26 June 2009), 65. by Xiongying Yuan, Changning Liu, Pengcheng Yang, et al.Shunmin He, Qi Liao, Shuli Kang, Yi Zhao posted to biology clustered coordination interaction microrna network protein regulating systems by dswan to the group Bioinformatics on 2009-07-13 10:10:38 as along with 3 people daforerog cisevol ealloza
	Identifying gene and protein mentions in text using conditional random fields [My Copy] BMC Bioinformatics, Vol. 6, No. Suppl 1. (2005), S6. by Ryan Mcdonald, Fernando Pereira posted to bioinformatics biomedical crf gene ner protein by svozil to the group Bioinformatics on 2009-05-26 15:43:13 as along with 6 people and 1 group robert85 yas bundschu bhaddow johnkork gmonce generif_paper
	Gene expression trends and protein features effectively complement each other in gene function prediction [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 322-330. by Krzysztof Wabnik, Torgeir R. Hvidsten, Anna Kedzierska, et al.Jelle Van Leene, Geert De Jaeger, Gerrit T. S. Beemster, Jan Komorowski, Martin T. R. Kuiper posted to expression feature function gene prediction protein by dswan to the group Bioinformatics on 2009-01-30 10:19:04 as along with 5 people grimplet TRHvidsten jfr guhjy tmmurali
	STRING 8--a global view on proteins and their functional interactions in 630 organisms. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to api database eukaryotes function genomics graph interaction ppi prokaryotes protein string by behindtherabbit to the group Bioinformatics on 2008-12-10 15:59:47 as along with 16 people dfdong carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister chad_davis larsjuhljensen druvus guhjy renatomilani grahamc kgutwin biehl
	Modularity of cellular networks shows general center-periphery polarization [My Copy] Bioinformatics (25 October 2008), btn555. by Alexander E. Vinogradov posted to bioinformatics biology cell closeness e-coli eigenvector gene go grid high-throughput interaction kegg modular network power protein regulatory topology ucinet yeast by behindtherabbit to the group Bioinformatics on 2008-12-04 18:59:00 as along with 3 people cgaugain grahamc renatomilani
	An automated method for finding molecular complexes in large protein interaction networks. [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003) by G. D. Bader, C. W. Hogue posted to complex cytoscape interaction network plugin protein by dswan to the group Bioinformatics on 2008-11-25 15:24:36 as along with 10 people and 1 group zufar waqaralikeble cswinburne jiny dragonrez lfriedl nirfriedman massivemayhem carlk ethkim kdl
	A Framework for Elucidating Regulatory Networks Based on Prior Information and Expression Data [My Copy] Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 240-248. by Olivier Gevaert, V. A. N. Vooren, N. Steve, D. E. Moor, T. Bar posted to bayesian dream integration microarray network prior protein by frohike to the group Bioinformatics on 2008-04-07 14:48:50 as along with 1 person guhjy
	An evaluation of human protein-protein interaction data in the public domain [My Copy] BMC Bioinformatics, Vol. 7, No. Suppl 5. (2006), S19. by Suresh Mathivanan, Balamurugan Periaswamy, T. K. B. Gandhi, et al.Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, Y. L. Ramachandra, Akhilesh Pandey posted to database hprd intact interactions protein by frohike to the group Bioinformatics on 2008-03-27 10:27:40 as along with 8 people nzm grahamc alwinpremanand lpfernandes hpaces neils zdai renatomilani
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted to cancer classification interaction network protein by frohike to the group Bioinformatics on 2008-03-05 17:20:01 as along with 29 people and 3 groups yaredo fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Complex Networks Jarman Lab GeneGo
	Protein interactions in human genetic diseases [My Copy] Genome Biology, Vol. 9, No. 1. (2008) by Benjamin S. Bockler, Alex Bateman posted to disease human interaction protein by frohike to the group Bioinformatics on 2008-02-29 11:00:25 as along with 10 people and 1 group barry balicea neils grahamc aconesa biomcgary barriot mingzhi mclarenv guhjy McCammon
	An integrated mass spectrometric and computational framework for the analysis of protein interaction networks [My Copy] Nature Biotechnology, Vol. 25, No. 3. (25 February 2007), pp. 345-352. by Oliver Rinner, Lukas N. Mueller, Martin Hubálek, Markus Müller, Matthias Gstaiger, Ruedi Aebersold posted to ms network protein by okarsligil to the group Bioinformatics on 2007-03-19 13:10:19 as along with 5 people guhjy jfr Dualsystems nedwards mingzhi
	Splicing and the Evolution of Proteins in Mammals [My Copy] PLoS Biol, Vol. 5, No. 2. (6 February 2007), e14. by Joanna L. Parmley, Araxi O. Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D. Hurst posted to protein splincing by kehan to the group Bioinformatics on 2007-02-14 17:15:16 as along with 8 people and 6 groups mtruksa operon aalibes dpollard dchughes stajich jwestbrook gileswl biodiversity_conservation EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
	Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. [My Copy] Mol Cell, Vol. 15, No. 4. (2004), pp. 595-605. by S. A. Sarraf, I. Stancheva posted to macromolecular lysinemetabolism islands interferingmetabolism humans histonesmetabolism hela govt genetics gene factors dna-binding dna disassembly cpg chromatin cells carrier biological assembly and genome-chromatin two-hybrid transcription techniques system support substances small silencing s rna research replication regions proteinsmetabolism proteinsgeneticsmetabolism proteinsgenetics protein promoter phase non-us models methyltransferasesmetabolism methylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:48 as along with 1 group ProkaryoteInterestGroup
	[How the methyl-CpG binding protein-related epigenetic disease turns on the genes that produce its symptoms] [My Copy] Tanpakushitsu Kakusan Koso, Vol. 50, No. 8. (2005), pp. 978-84. by S. Horike posted to genome-chromatin transcription syndromegenetics rett repressor proteinsgenetics proteins protein non-histonegenetics mutation methyl-cpg-binding imprintinggenetics humans homeodomain histones genomic female factors dna-binding disassemblygenetics chromosomal chromatingenetics chromatin assembly animals and 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:47 as along with 1 group ProkaryoteInterestGroup
	Genomic DNA methylation: the mark and its mediators. [My Copy] Trends Biochem Sci, Vol. 31, No. 2. (2006), pp. 89-97. by R. J. Klose, A. P. Bird posted to genome-chromatin transcription syndromephysiopathology support silencingphysiology rett research regulation proteinsmetabolismphysiology protein non-us neoplasmsgenetics methylationdrug methyl-cpg-binding islandsphysiology intestinal humans govt geneticphysiology geneticdrug gene factorsphysiology expression epigenesis effectsphysiology effects dna-binding dna cytosine-5--methyltransferasemetabolism cpg animals 2genetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:46 as along with 1 group ProkaryoteInterestGroup
	Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis. [My Copy] Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5. by F. Magdinier, S. G. D'Estaing, C. Peinado, et al.B. Demirci, C. Berthet, J. F. Guerin, R. Dante posted to genome-chromatin tumor suppressor support spermatozoametabolism research regulation protein p53genetics oocytesmetabolism non-us mice methylation male kinetics islandsgenetics humans govt genes gene fetal female expression embryonic dna developmentgenetics developmental cpg brca1 blastocystmetabolism animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:42 as along with 1 group ProkaryoteInterestGroup
	Solution structure of the SWIRM domain of human histone demethylase LSD1. [My Copy] Structure, Vol. 14, No. 3. (2006), pp. 457-68. by N. Tochio, T. Umehara, S. Koshiba, et al.M. Inoue, T. Yabuki, M. Aoki, E. Seki, S. Watanabe, Y. Tomo, M. Hanada, M. Ikari, M. Sato, T. Terada, T. Nagase, O. Ohara, M. Shirouzu, A. Tanaka, T. Kigawa, S. Yokoyama posted to specificity sequence research proteins protein oxidoreductases non-us n-demethylatingchemistrygenetics motifs molecular models histonesanalysismetabolism helix-turn-helix govt factorsanalysischemistry factors dna-binding disassembly data conformation chromatin assembly and amino acid genome-chromatin transcription time tertiary support substrate structure by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:41 as along with 1 group ProkaryoteInterestGroup
	Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements. [My Copy] Mol Cell Biol, Vol. 25, No. 7. (2005), pp. 2698-707. by A. Dhasarathy, M. P. Kladde posted to genome-chromatin us transcription trans-activatorsmetabolism time support sites saccharomyces research regulation regions proteinsmetabolism proteinsgeneticsmetabolism protein promoter phs phosphatespharmacology nuclear non-us kinasesmetabolism immunoprecipitation histone govt geneticsgenetics gene fungal factorsmetabolism factors expression effectsenzymologygenetics dna-binding disassembly chromatingeneticsmetabolism chromatin cerevisiaedrug cerevisiae binding assembly and acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:38 as along with 1 group ProkaryoteInterestGroup
	Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins. [My Copy] J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35. by T. Ichimura, S. Watanabe, Y. Sakamoto, T. Aoto, N. Fujita, M. Nakao posted to genome-chromatin transcription support sp1 silencing sequence research repressor regulation recombinant proteinsgeneticsmetabolism protein non-us multiprotein multigene molecular mice methyltransferasesgeneticsmetabolism humans heterochromatinmetabolism hela govt genetic gene fusion family factorsgeneticsmetabolism factorgeneticsmetabolism expression epigenesis dna-binding disassembly data complexes chromatin cells assembly animals and amino alignment acid by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	Remodelling chromatin on a global scale: a novel protective function of p53. [My Copy] Carcinogenesis, Vol. 25, No. 9. (2004), pp. 1551-7. by S. J. Allison, J. Milner posted to genome-chromatin ultraviolet tumor transcription suppressor support research repairphysiology rays protein p53physiology non-us humans histonesmetabolism govt geneticradiation effects dnaphysiologyradiation dna damagegenetics chromatinphysiologyradiation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:30 as along with 1 group ProkaryoteInterestGroup
	TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. [My Copy] Genes Dev, Vol. 19, No. 8. (2005), pp. 955-64. by N. Bachman, M. E. Gelbart, T. Tsukiyama, J. D. Boeke posted to genome-chromatin us transfergenetics transcription tfiiibgenetics support subunitsgenetics study specificity species saccharomyces rna retroelementsgenetics research recombination reaction proteinsgenetics protein primers polymerase phs nucleosomesgeneticsmetabolism nih immunoprecipitation govt geneticgenetics factorsgenetics factor extramural dna disassemblygenetics comparative chromatin chain cerevisiaegenetics cerevisiae assembly and adenosinetriphosphatasegenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:22 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	The role of mammalian DNA methyltransferases in the regulation of gene expression. [My Copy] Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47. by Turek J. Plewa, P. P. Jagodzinski posted to genome-chromatin transcription support research regulation protein non-us isoforms humans govt genetic gene expression epigenesis dna disassembly cytosine-5--methyltransferasechemistrymetabolism chromatin assembly animals and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:17 as along with 1 group ProkaryoteInterestGroup
	Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. [My Copy] Curr Biol, Vol. 16, No. 5. (2006), pp. 486-92. by P. E. Jullien, A. Katz, M. Oliva, N. Ohad, F. Berger posted to genome-chromatin us support silencing seedsgeneticsmetabolism research repressor regulation proteinsmetabolismphysiology proteinsgeneticsmetabolism protein processing post-translational plant non-us non-phs models methylation imprinting immunoprecipitation histonesmetabolism govt genomic genetic gene expression disassembly development chromatin assembly arabidopsisembryologygeneticsgrowth arabidopsis and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:11 as along with 1 group ProkaryoteInterestGroup
	RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription. [My Copy] Nature, Vol. 435, No. 7046. (2005), pp. 1275-9. by V. Schramke, D. M. Sheedy, A. M. Denli, et al.C. Bonila, K. Ekwall, G. J. Hannon, R. C. Allshire posted to genome-chromatin viral transcription support small schizosaccharomycesenzymologygenetics schizosaccharomyces rna ribonucleasesmetabolism research regulation proteinsmetabolism protein pombe polymerasesmetabolism polymerase non-us interferinggeneticsmetabolism interference iichemistrymetabolism govt genetic gene fungal expression dna-directed disassembly chromatingeneticsmetabolism chromatin centromeregeneticsmetabolism binding assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:10 as along with 1 group ProkaryoteInterestGroup
	NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by T. Wu, J. Wang, C. Liu, et al.Y. Zhang, B. Shi, X. Zhu, Z. Zhang, G. Skogerbø, L. Chen, H. Lu, Y. Zhao, R. Chen posted to database interaction ncrna protein by bsmagic to the group Bioinformatics on 2006-11-16 13:20:29 as along with 1 person and 1 group mtagaya bioinplant
	Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays [My Copy] Science, Vol. 302, No. 5653. (Dec 2003), pp. 2141-2144. by J. M. Johnson, J. Castle, Garrett P. Engele, et al.Z. Kan, P. M. Loerch, C. D. Armour, R. Santos, E. E. Schadt, R. Stoughton, D. D. Shoemaker posted to 0500 20040107 alternative amyloid analysis array beta-protein cell chain coa complementary curve data distribution dna exons expressed genome human humans hydrolases hydroxymethylglutaryl isoformsanalysis line molecular monoester oligonucleotide phosphoric polymerase precursoranalysisgenetics precursorsgenetics protein proteinsanalysisgenetics reaction reductasesanalysisgenetics reverse rna roc sequence splicing tags tissue transcriptase by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice [My Copy] Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379. by S. Kikuchi, K. Satoh, T. Nagata, et al.N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka, I. Hotta, K. Kojima, T. Namiki, E. Ohneda, W. Yahagi, K. Suzuki, C. J. Li, K. Ohtsuki, T. Shishiki, Y. Otomo, K. Murakami, Y. Iida, S. Sugano, T. Fujimura, Y. Suzuki, Y. Tsunoda, T. Kurosaki, T. Kodama, H. Masuda, M. Kobayashi, Q. Xie, M. Lu, R. Narikawa, A. Sugiyama, K. Mizuno, S. Yokomizo, J. Niikura, R. Ikeda, J. Ishibiki, M. Kawamata, A. Yoshimura, J. Miura, T. Kusumegi, M. Oka, R. Ryu, M. Ueda, K. Matsubara, J. Kawai, P. Carninci, J. Adachi, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, N. Hayatsu, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, S. Kondo, H. Konno, A. Miyazaki, N. Osato, Y. Ota, R. Saito, D. Sasaki, K. Sato, K. Shibata, A. Shinagawa, T. Shiraki, M. Yoshino, Y. Hayashizaki, A. Yasunishi posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as
	Integrative annotation of 21,037 human genes validated by full-length cDNA clones [My Copy] PLoS Biol, Vol. 2, No. 6. (Jun 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Yamaguchi Y. Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, Thierry J. Mieg, Thierry D. Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, Bonaldo F. Mde, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, Fukami K. Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, Mariage R. Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, Piatier D. Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome [My Copy] Nat Genet, Vol. 24, No. 4. (Apr 2000), pp. 340-341. by L. Croft, S. Schandorff, F. Clark, K. Burrage, P. Arctander, J. S. Mattick posted to 0900 20000508 alternative biology computational databases exonsgenetics expressed factualtrends frequency gene genome human humans intronsgenetics isoformsgenetics messengergenetics protein rna sequence splicinggenetics tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Frequent alternative splicing of human genes [My Copy] Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293. by A. A. Mironov, J. W. Fickett, M. S. Gelfand posted to 0001 19991230 5 alignment alternative base contig data databases exonsgenetics expressed factual govt humans intronsgenetics isoformsgenetics mappingmethods molecular non-phs non-us protein regionsgenetics research sequence sequencegenetics splicing support tags untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Alternative splicing of conserved exons is frequently species-specific in human and mouse [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77. by Q. Pan, M. A. Bakowski, Q. Morris, et al.W. Zhang, B. J. Frey, T. R. Hughes, B. J. Blencowe posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments [My Copy] Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102. by J. M. Johnson, S. Edwards, D. Shoemaker, E. E. Schadt posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs [My Copy] Nature, Vol. 420, No. 6915. (Dec 2002), pp. 563-573. by Y. Okazaki, M. Furuno, T. Kasukawa, et al.J. Adachi, H. Bono, S. Kondo, I. Nikaido, N. Osato, R. Saito, H. Suzuki, I. Yamanaka, H. Kiyosawa, K. Yagi, Y. Tomaru, Y. Hasegawa, A. Nogami, C. Schonbach, T. Gojobori, R. Baldarelli, D. P. Hill, C. Bult, D. A. Hume, J. Quackenbush, L. M. Schriml, A. Kanapin, H. Matsuda, S. Batalov, K. W. Beisel, J. A. Blake, D. Bradt, V. Brusic, C. Chothia, L. E. Corbani, S. Cousins, E. Dalla, T. A. Dragani, C. F. Fletcher, A. Forrest, K. S. Frazer, T. Gaasterland, M. Gariboldi, C. Gissi, A. Godzik, J. Gough, S. Grimmond, S. Gustincich, N. Hirokawa, I. J. Jackson, E. D. Jarvis, A. Kanai, H. Kawaji, Y. Kawasawa, R. M. Kedzierski, B. L. King, A. Konagaya, I. V. Kurochkin, Y. Lee, B. Lenhard, P. A. Lyons, D. R. Maglott, L. Maltais, L. Marchionni, L. Mckenzie, H. Miki, T. Nagashima, K. Numata, T. Okido, W. J. Pavan, G. Pertea, G. Pesole, N. Petrovsky, R. Pillai, J. U. Pontius, D. Qi, S. Ramachandran, T. Ravasi, J. C. Reed, D. J. Reed, J. Reid, B. Z. Ring, M. Ringwald, A. Sandelin, C. Schneider, C. A. Semple, M. Setou, K. Shimada, R. Sultana, Y. Takenaka, M. S. Taylor, R. D. Teasdale, M. Tomita, R. Verardo, L. Wagner, C. Wahlestedt, Y. Wang, Y. Watanabe, C. Wells, L. G. Wilming, Wynshaw A. Boris, M. Yanagisawa, I. Yang, L. Yang, Z. Yuan, M. Zavolan, Y. Zhu, A. Zimmer, P. Carninci, N. Hayatsu, Hirozane T. Kishikawa, H. Konno, M. Nakamura, N. Sakazume, K. Sato, T. Shiraki, K. Waki, J. Kawai, K. Aizawa, T. Arakawa, S. Fukuda, A. Hara, W. Hashizume, K. Imotani, Y. Ishii, M. Itoh, I. Kagawa, A. Miyazaki, K. Sakai, D. Sasaki, K. Shibata, A. Shinagawa, A. Yasunishi, M. Yoshino, R. Waterston, E. S. Lander, J. Rogers, E. Birney, Y. Hayashizaki posted to 0400 20021228 acid alternative amino animals antisensegenetics chromosome chromosomes cloning complementarygenetics databases dna expressed genesgenetics genetic geneticgenetics genomicsmethods govt humans initiation mammaliangenetics mapping membrane messengeranalysisgenetics micegenetics molecular motifs non-us physical protein proteinsgenetics proteomechemistrygenetics research rna sequence site splicinggenetics structure support tags tertiary transcription untranslatedanalysisgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:45 as
	Identification of protein coding regions in genomic DNA [My Copy] J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as
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structure	1110
interaction	518
evolution	471
folding	417
prediction	410
membrane	307
network	281
review	274
bioinformatics	265
function	253
sequence	219
database	197
alignment	190
binding	180
docking	155
dynamics	150
domain	144
rna	134
nmr	126
expression	125
design	118
gene	118
yeast	117
dna	115
interactions	111
networks	111
modeling	99
ligand	92
classification	90
enzyme	89
simulation	87
modelling	86
fold	81
electrostatics	79
proteomics	76
drug	71
stability	70
biology	67
molecular	67
complex	66
methods	66
mutation	66
algorithms	65
genome	65
amaranthus	63
ppi	63
model	60
mrna	60
tlb	59
experiment	58
md	58
algorithm	57
kinase	57
major-proposal	56
analysis	55
cell	54
motif	52
lipid	51
structural-biology	51
annotation	50
protein-protein	50
genomics	49
method	47
enzymatic_hydrolysis	46
transcription	46
homology	45
ribosome	45
aggregation	44
comps	44
cell-free	43
translation	43
microarray	42
bacteria	41
clustering	41
interface	41
whey	41
software	40
surface	40
energy	39
proteins	39
conformation	38
peptide	38
potential	38
recognition	38
localization	37
pdb	37
site	37
selection	36
disease	35
nlp	35
phylogeny	35
aravind	34
computational	34
correlation	34
fluorescence	34
scp	34
virus	34
bio	33
electrostatic	33
human	33

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