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Group: Bioinformatics - with tag protein [85 articles]

Recent papers posted by members of the Bioinformatics group with tag protein
  • A Framework for Elucidating Regulatory Networks Based on Prior Information and Expression Data
    Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 240-248.
    by Olivier Gevaert, VAN Vooren, N Steve, DE Moor, T Bar
  • An evaluation of human protein-protein interaction data in the public domain
    BMC Bioinformatics, Vol. 7, No. Suppl 5. (2006)
    by Suresh Mathivanan, Balamurugan Periaswamy, TKB Gandhi, Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, YL Ramachandra, Akhilesh Pandey
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
  • An integrated mass spectrometric and computational framework for the analysis of protein interaction networks
    Nature Biotechnology, Vol. 25, No. 3. (25 February 2007), pp. 345-352.
    by Oliver Rinner, Lukas N Mueller, Martin Hubálek, Markus Müller, Matthias Gstaiger, Ruedi Aebersold
    posted to ms network protein by okarsligil to the group Bioinformatics on 2007-03-19 13:10:19 as ** along with 5 people jyuh jfr Dualsystems nedwards mingzhi
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
  • Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly.
    Mol Cell, Vol. 15, No. 4. (2004), pp. 595-605.
    by SA Sarraf, I Stancheva
  • [How the methyl-CpG binding protein-related epigenetic disease turns on the genes that produce its symptoms]
    Tanpakushitsu Kakusan Koso, Vol. 50, No. 8. (2005), pp. 978-84.
    by S Horike
  • Genomic DNA methylation: the mark and its mediators.
    Trends Biochem Sci, Vol. 31, No. 2. (2006), pp. 89-97.
    by RJ Klose, AP Bird
  • Epigenetic marks at BRCA1 and p53 coding sequences in early human embryogenesis.
    Mol Hum Reprod, Vol. 8, No. 7. (2002), pp. 630-5.
  • Solution structure of the SWIRM domain of human histone demethylase LSD1.
    Structure, Vol. 14, No. 3. (2006), pp. 457-68.
    by N Tochio, T Umehara, S Koshiba, M Inoue, T Yabuki, M Aoki, E Seki, S Watanabe, Y Tomo, M Hanada, M Ikari, M Sato, T Terada, T Nagase, O Ohara, M Shirouzu, A Tanaka, T Kigawa, S Yokoyama
  • Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements.
    Mol Cell Biol, Vol. 25, No. 7. (2005), pp. 2698-707.
  • Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins.
    J Biol Chem, Vol. 280, No. 14. (2005), pp. 13928-35.
  • Remodelling chromatin on a global scale: a novel protective function of p53.
    Carcinogenesis, Vol. 25, No. 9. (2004), pp. 1551-7.
    by SJ Allison, J Milner
  • TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs.
    Genes Dev, Vol. 19, No. 8. (2005), pp. 955-64.
    by N Bachman, ME Gelbart, T Tsukiyama, JD Boeke
  • Identification of SATB2 as the cleft palate gene on 2q32-q33.
    Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501.
  • The role of mammalian DNA methyltransferases in the regulation of gene expression.
    Cell Mol Biol Lett, Vol. 10, No. 4. (2005), pp. 631-47.
    by Turek J Plewa, PP Jagodzinski
  • Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis.
    Curr Biol, Vol. 16, No. 5. (2006), pp. 486-92.
    by PE Jullien, A Katz, M Oliva, N Ohad, F Berger
  • RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription.
    Nature, Vol. 435, No. 7046. (2005), pp. 1275-9.
    by V Schramke, DM Sheedy, AM Denli, C Bonila, K Ekwall, GJ Hannon, RC Allshire
  • NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by T Wu, J Wang, C Liu, Y Zhang, B Shi, X Zhu, Z Zhang, G Skogerbø, L Chen, H Lu, Y Zhao, R Chen
  • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    Science, Vol. 302, No. 5653. (Dec 2003), pp. 2141-2144.
    by JM Johnson, J Castle, Garrett P Engele, Z Kan, PM Loerch, CD Armour, R Santos, EE Schadt, R Stoughton, DD Shoemaker
  • Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379.
  • Integrative annotation of 21,037 human genes validated by full-length cDNA clones
    PLoS Biol, Vol. 2, No. 6. (Jun 2004)
    by T Imanishi, T Itoh, Y Suzuki, C O'Donovan, S Fukuchi, KO Koyanagi, RA Barrero, T Tamura, Yamaguchi Y Kabata, M Tanino, K Yura, S Miyazaki, K Ikeo, K Homma, A Kasprzyk, T Nishikawa, M Hirakawa, Thierry J Mieg, Thierry D Mieg, J Ashurst, L Jia, M Nakao, MA Thomas, N Mulder, Y Karavidopoulou, L Jin, S Kim, T Yasuda, B Lenhard, E Eveno, Y Suzuki, C Yamasaki, J Takeda, C Gough, P Hilton, Y Fujii, H Sakai, S Tanaka, C Amid, M Bellgard, Bonaldo F Mde, H Bono, SK Bromberg, AJ Brookes, E Bruford, P Carninci, C Chelala, C Couillault, SJ de Souza, MA Debily, MD Devignes, I Dubchak, T Endo, A Estreicher, E Eyras, Fukami K Kobayashi, GR Gopinath, E Graudens, Y Hahn, M Han, ZG Han, K Hanada, H Hanaoka, E Harada, K Hashimoto, U Hinz, M Hirai, T Hishiki, I Hopkinson, S Imbeaud, H Inoko, A Kanapin, Y Kaneko, T Kasukawa, J Kelso, P Kersey, R Kikuno, K Kimura, B Korn, V Kuryshev, I Makalowska, T Makino, S Mano, Mariage R Samson, J Mashima, H Matsuda, HW Mewes, S Minoshima, K Nagai, H Nagasaki, N Nagata, R Nigam, O Ogasawara, O Ohara, M Ohtsubo, N Okada, T Okido, S Oota, M Ota, T Ota, T Otsuki, Piatier D Tonneau, A Poustka, SX Ren, N Saitou, K Sakai, S Sakamoto, R Sakate, I Schupp, F Servant, S Sherry, R Shiba, N Shimizu, M Shimoyama, AJ Simpson, B Soares, C Steward, M Suwa, M Suzuki, A Takahashi, G Tamiya, H Tanaka, T Taylor, JD Terwilliger, P Unneberg, V Veeramachaneni, S Watanabe, L Wilming, N Yasuda, HS Yoo, M Stodolsky, W Makalowski, M Go, K Nakai, T Takagi, M Kanehisa, Y Sakaki, J Quackenbush, Y Okazaki, Y Hayashizaki, W Hide, R Chakraborty, K Nishikawa, H Sugawara, Y Tateno, Z Chen, M Oishi, P Tonellato, R Apweiler, K Okubo, L Wagner, S Wiemann, RL Strausberg, T Isogai, C Auffray, N Nomura, T Gojobori, S Sugano
  • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766.
    by Q Xu, B Modrek, C Lee
  • ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome
    Nat Genet, Vol. 24, No. 4. (Apr 2000), pp. 340-341.
  • Frequent alternative splicing of human genes
    Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293.
    by AA Mironov, JW Fickett, MS Gelfand
  • Alternative splicing of conserved exons is frequently species-specific in human and mouse
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77.
    by Q Pan, MA Bakowski, Q Morris, W Zhang, BJ Frey, TR Hughes, BJ Blencowe
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102.
  • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    Nature, Vol. 420, No. 6915. (Dec 2002), pp. 563-573.