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Group: Bioinformatics - with tag protein_function [18 articles]

Recent papers posted by members of the Bioinformatics group with tag protein_function
  • Defining functional distances over Gene Ontology
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Angela D Pozo, Florencio Pazos, Alfonso Valencia
    posted to clustering gene_ontology protein_function by barry to the group Bioinformatics on 2008-03-20 01:06:15 as ** along with 6 people and 1 group jyuh carlk tny grahamc sobolevnrm barriot baker-group
  • Conformational diversity and protein evolution--a 60-year-old hypothesis revisited.
    Trends Biochem Sci, Vol. 28, No. 7. (July 2003), pp. 361-368.
    by LC James, DS Tawfik
    posted to protein_structure protein_function protein_evolution protein_dynamics by ana to the group Bioinformatics on 2007-01-24 03:21:40 as **** along with 1 person and 1 group barry structural_bioinformatics
  • Evolution of protein fold in the presence of functional constraints
    Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 399-408.
    by Antonina Andreeva, Alexey G Murzin
    posted to structure_classification protein_structure protein_function protein_evolution by ana to the group Bioinformatics on 2007-01-24 03:21:02 as *** along with 4 people and 1 group barry Einat tny cjeans structural_bioinformatics
  • Data mining the protein data bank: residue interactions.
    Proteins, Vol. 49, No. 4. (1 December 2002), pp. 510-528.
    by TJ Oldfield
    posted to active_site algorithms data_mining protein_function protein_structure structure_comparison structure_superposition by ana to the group Bioinformatics on 2006-01-31 18:26:40 as read along with 2 people and 1 group blackbart rabio structural_bioinformatics
  • Comparing functional annotation analyses with Catmap.
    BMC Bioinformatics, Vol. 5, No. 1. (9 December 2004)
    by T Breslin, P Edén, M Krogh
    posted to gene_ontology protein_function protein_sequence by ana to the group Bioinformatics on 2006-01-25 19:05:39 as *** along with 2 people and 2 groups raylim ealloza structural_bioinformatics BioinfoCIPF
  • Protein Molecular Function Prediction by Bayesian Phylogenomics.
    PLoS Comput Biol, Vol. 1, No. 5. (7 October 2005)
    by Barbara E E Engelhardt, Michael I I Jordan, Kathryn E E Muratore, Steven E E Brenner
    posted to function_prediction gene_duplication hgt orthology phylogenomics protein_evolution protein_function protein_sequence by ana to the group Bioinformatics on 2005-11-22 19:15:19 as ** along with 7 people and 3 groups kentsis eoghanharr Einat dlr marcius sriram_s bootsy structural_bioinformatics BioinfoCIPF SGU-CIPF
  • Prediction of functional specificity determinants from protein sequences using log-likelihood ratios
    Bioinformatics (8 August 2005)
    by J Pei, W Cai, LN Kinch, NV Grishin
    posted to classification function_prediction protein_evolution protein_function by ana to the group Bioinformatics on 2005-11-09 18:56:06 as *** along with 2 people and 1 group barry Einat structural_bioinformatics
  • Backbone and side chain dynamics of mutant calmodulin-Peptide complexes.
    Biochemistry, Vol. 44, No. 38. (27 September 2005), pp. 12627-12639.
    by TI Igumenova, AL Lee, AJ Wand
    posted to protein_dynamics protein_function protein_structure structure_comparison by ana to the group Bioinformatics on 2005-10-09 04:05:20 as ** along with 1 person and 1 group lna structural_bioinformatics
  • Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function.
    J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196.
    by LA Mirny, EI Shakhnovich
    posted to protein_evolution protein_folding protein_function protein_structure sequence_comparison structure_comparison by ana to the group Bioinformatics on 2005-09-28 01:09:51 as ***** along with 3 people and 3 groups barry Einat marcius structural_bioinformatics BioinfoCIPF SGU-CIPF
  • On evolutionary conservation of thermodynamic coupling in proteins.
    J Biol Chem, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050.
    by AA Fodor, RW Aldrich
    posted to correlated_mutations protein_evolution protein_folding protein_function protein_structure statistical_coupling_analysis by ana to the group Bioinformatics on 2005-09-27 22:12:45 as *** along with 7 people and 1 group Lombardo_7 ca3295 friendpine barry gbart cjeans tale structural_bioinformatics
  • Protein families and their evolution-a structural perspective.
    Annu Rev Biochem, Vol. 74 (2005), pp. 867-900.
    by CA Orengo, JM Thornton
    posted to protein_evolution protein_function protein_structure by ana to the group Bioinformatics on 2005-09-01 23:12:18 as *** along with 13 people and 5 groups sim82 nigham barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome BioinfoCIPF SGU-CIPF
  • Fragnostic: walking through protein structure space.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by I Friedberg, A Godzik
    posted to protein_function protein_structure protein_universe structure_classification structure_comparison by ana to the group Bioinformatics on 2005-08-29 20:57:23 as read along with 7 people and 3 groups barry pansapiens aalibes Einat marcius alexg eweaver structural_bioinformatics BioinfoCIPF SGU-CIPF
  • FSSA: a novel method for identifying functional signatures from structural alignments.
    Bioinformatics (28 April 2005)
    by Kai Wang, Ram Samudrala
    posted to function_prediction protein_function protein_structure structure_comparison by ana to the group Bioinformatics on 2005-06-16 19:29:55 as * along with 2 people and 1 group barry Einat structural_bioinformatics
  • The properties of protein family space depend on experimental design
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2618-2622.
    by Victor Kunin, Sarah A Teichmann, Martijn A Huynen, Christos A Ouzounis
    posted to power-law protein_evolution protein_function protein_universe by ana to the group Bioinformatics on 2005-06-15 20:20:37 as ** along with 2 people and 1 group barry cjeans structural_bioinformatics
  • In search of the limits of evolution
    Nature Genetics, Vol. 37, No. 1. (January 2005), pp. 9-10.
    by Fyodor A Kondrashov
    posted to directed_evolution neofunctionalization protein_evolution protein_function protein_moonlighting by ana to the group Bioinformatics on 2005-06-06 21:14:46 as *** along with 1 person and 1 group LeightonP structural_bioinformatics
  • The 'evolvability' of promiscuous protein functions
    Nature Genetics, Vol. 37, No. 1. (January 2005), pp. 73-76.
    by Amir Aharoni, Leonid Gaidukov, Olga Khershonsky, Stephen M Gould, Cintia Roodveldt, Dan S Tawfik
    posted to directed_evolution neofunctionalization protein_evolution protein_function protein_moonlighting by ana to the group Bioinformatics on 2005-06-06 21:12:37 as **** along with 1 person and 1 group LeightonP structural_bioinformatics
  • Finding local structural similarities among families of unrelated protein structures: a generic non-linear alignment algorithm.
    Proteins, Vol. 34, No. 3. (15 February 1999), pp. 341-355.
    by JV Lehtonen, K Denessiouk, AC May, MS Johnson
    posted to local_structure_similarity protein_evolution protein_function by ana to the group Bioinformatics on 2005-05-03 03:45:04 as ** along with 1 group structural_bioinformatics
  • Evolution of protein structures and functions.
    Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 400-408.
    by LN Kinch, NV Grishin
    posted to homology_analogy protein_evolution protein_function protein_structure sequence_structure structure_function by ana to the group Bioinformatics on 2005-04-26 05:12:27 as read along with 5 people and 6 groups korakot karbak matzke barry joergkurtwegner Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Molecular-Modelling Drug-Design Cheminformatics
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