Group: Bioinformatics - with tag results [21 articles] Export

Recent papers posted by members of the Bioinformatics group with tag results

	Using the ratio of means as the effect size measure in combining results of microarray experiments [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 106. by Pingzhao Hu, Celia Greenwood, Joseph Beyene posted to size results ratio microarray meta measure means experiemnts effect combining analysis by dswan to the group Bioinformatics on 2009-11-09 11:42:52 as along with 1 person renatomilani
	Gene identification in novel eukaryotic genomes by self-training algorithm [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506. by A. Lomsadze, Ter V. Hovhannisyan, Y. O. Chernoff, M. Borodovsky posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Stochastic models inspired by hybridization theory for short oligonucleotide arrays [My Copy] J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893. by Z. Wu, R. A. Irizarry posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	Global identification of human transcribed sequences with genome tiling arrays [My Copy] Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246. by P. Bertone, V. Stolc, T. E. Royce, et al.J. S. Rozowsky, A. E. Urban, X. Zhu, J. L. Rinn, W. Tongprasit, M. Samanta, S. Weissman, M. Gerstein, M. Snyder posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as
	A comprehensive transcript index of the human genome generated using microarrays and computational approaches [My Copy] Genome Biol, Vol. 5, No. 10. (2004) by E. E. Schadt, S. W. Edwards, D. Guhathakurta, et al.D. Holder, L. Ying, V. Svetnik, A. Leonardson, K. W. Hart, A. Russell, G. Li, G. Cavet, J. Castle, P. Mcdonagh, Z. Kan, R. Chen, A. Kasarskis, M. Margarint, R. M. Caceres, J. M. Johnson, C. D. Armour, Garrett P. W. Engele, N. F. Tsinoremas, D. D. Shoemaker posted to 0900 20050729 20genetics 22genetics analysis and array biology chromosomes computational conserved expression gene geneticgenetics genome human humans of oligonucleotide organ pair profiling reproducibility results sensitivity sequence sequencegenetics specificity transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as
	Identification of protein coding regions in genomic DNA [My Copy] J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as
	Interpolated Markov models for eukaryotic gene finding [My Copy] Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31. by S. L. Salzberg, M. Pertea, A. L. Delcher, M. J. Gardner, H. Tettelin posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as
	Finding genes in DNA with a Hidden Markov Model [My Copy] J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141. by J. Henderson, S. Salzberg, K. H. Fasman posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as
	Comparative gene prediction in human and mouse [My Copy] Genome Res, Vol. 13, No. 1. (Jan 2003), pp. 108-117. by G. Parra, P. Agarwal, J. F. Abril, T. Wiehe, J. W. Fickett, R. Guigo posted to 0400 20030318 22genetics acid animals biologymethods chromosomes comparative computational databases forecastingmethods genes genetic genome govt human humans mice non-us nucleic of pair predictive reproducibility research results software structuralgenetics study support tests value by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as
	ESTGenes: alternative splicing from ESTs in Ensembl [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 976-987. by E. Eyras, M. Caccamo, V. Curwen, M. Clamp posted to alternative comparative computational rats research animals expressed genetic insect support us caenorhabditis culicidaegenetics elegansgenetics humans mice results structural 0500 20040818 biology caenorhabditisgenetics dna genes govt helminthgenetics non-us phs predictive splicinggenetics value helminth of reproducibility sequence software study tags tests transcription zebrafishgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:38 as
	Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences [My Copy] Bioinformatics, Vol. 15, No. 11. (Nov 1999), pp. 887-899. by N. Pavy, S. Rombauts, P. Dehais, et al.C. Mathe, D. V. Ramana, P. Leroy, P. Rouze posted to alternative contig dnamethods exonsgenetics sequence splicinggenetics study 20000608 computational evaluation reproducibility software studies support comparative mappingmethods 0900 arabidopsisgenetics genetic govt of protein research results validation analysis biologymethods databases factual genome models non-us plant by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:26 as
	An assessment of gene prediction accuracy in large DNA sequences [My Copy] Genome Res, Vol. 10, No. 10. (Oct 2000), pp. 1631-1642. by R. Guigo, P. Agarwal, J. F. Abril, M. Burset, J. W. Fickett posted to genes of software composition reproducibility research 1001 humans non-us results structuralgenetics support 20010228 computational dnachemistrygenetics artificialchemistrygenetics base biologymethods chromosomes govt by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:21 as
	Comparative ab initio prediction of gene structures using pair HMMs [My Copy] Bioinformatics, Vol. 18, No. 10. (Oct 2002), pp. 1309-1318. by I. M. Meyer, R. Durbin posted to databases software specificity alignmentmethods chains mice sequence 0500 algorithms comparative exonsgenetics expression genetic models regulation analysis animals markov proteomicsmethods research study 20030506 acid and dnamethods gene govt humans non-us nucleic of reproducibility results sensitivity support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:59 as
	Genome-wide detection of alternative splicing in expressed sequences of human genes [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (Jul 2001), pp. 2850-2859. by B. Modrek, A. Resch, C. Grasso, C. Lee posted to 1001 20010803 alignment alternative antigenschemistrygenetics base biology computational consensus conserved databases exonsgenetics expressed familygenetics genesgenetics genome genomics govt hla-d human humans internet intronsgenetics kinasesgenetics messengeranalysisgenetics multigene non-phs non-us nucleotidegenetics of polymorphism protein-serine-threonine reproducibility research results rna sequence sequencegenetics single sitesgenetics splice splicinggenetics support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:57 as
	Analysis of canonical and non-canonical splice sites in mammalian genomes [My Copy] Nucleic Acids Res, Vol. 28, No. 21. (Nov 2000), pp. 4364-4375. by M. Burset, I. A. Seledtsov, V. V. Solovyev posted to 1001 20010228 animals base biology computational consensus conserved databases exonsgenetics expressed genome govt humans intronsgenetics non-us of reproducibility research results rna sequence sequencegenetics sitesgenetics software splice splicinggenetics support tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as
	GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [My Copy] Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618. by J. Besemer, A. Lomsadze, M. Borodovsky posted to 1001 20010728 algorithms alignment and archaeal archaealgenetics bacillus bacterial bacterialgenetics base biologymethods chains codon coligenetics computational computer databases escherichia evolution framesgenetics functions genes geneticgenetics genome initiatorgenetics internet likelihood markov molecular of open overlappinggenetics reading reproducibility results sensitivity sequence simulation software specificity subtilisgenetics transcription translation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as
	Pre-mRNA secondary structure prediction aids splice site prediction [My Copy] Pac Symp Biocomput (2002), pp. 223-234. by D. J. Patterson, K. Yasuhara, W. L. Ruzzo posted to 0400 20021003 acid analysis computer conformation exons functions genetic govt likelihood messengerchemistrygenetics models non-phs nucleic of precursorschemistry reproducibility results rna sequence simulation software splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:20 as
	Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions. [My Copy] Mol Phylogenet Evol, Vol. 25, No. 2. (Nov 2002), pp. 341-60. by Peter Goldblatt, Vincent Savolainen, Obie Porteous, et al.Ivan Sostaric, Martyn Powell, Gail Reeves, John C. Manning, Timothy G. Barraclough, Mark W. Chase posted to 414315 acid allocation analysis angiosperms animals bacterial banks basilicum bayes biodiversity biological birds calibration carboxylase chain classification codon comparative cooperation data databases demography diterpenes dna ecosystem energy environment european evolution factors financial flavonoids fossils functions fungal genes genetic genetics genome geography govt hybridization insects intergenic international interpretation introns iridaceae lamiaceae likelihood linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plants plastids pollen polymerase proteins random rays reaction regression reproducibility research results ribosomal ribulose-bisphosphate sequence solar spacer specimen states statistical study support temperature theorem time tobacco transpiration ultraviolet union united us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Darwin's abominable mystery: Insights from a supertree of the angiosperms. [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 101, No. 7. (Feb 2004), pp. 1904-9. by Jonathan T. Davies, Timothy G. Barraclough, Mark W. Chase, Pamela S. Soltis, Douglas E. Soltis, Vincent Savolainen posted to 14766971 acid analysis angiosperms animals banks basilicum bayes biodiversity biological calibration codon comparative data databases demography diterpenes dna energy environment evolution factors flavonoids fossils genetic genome geography govt intergenic introns lamiaceae linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plastids pollen rays regression reproducibility research results sequence solar specimen study support temperature theorem time transpiration ultraviolet us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:24 as along with 2 groups biodiversity_conservation GrassBase
	Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae). [My Copy] Ann Bot (Lond), Vol. 92, No. 1. (Jul 2003), pp. 107-27. by Mark W. Chase, Sandra Knapp, Antony V. Cox, et al.James J. Clarkson, Yelena Butsko, Jeffrey Joseph, Vincent Savolainen, Alex S. Parokonny posted to 12824072 acid analysis angiosperms animals banks basilicum bayes biodiversity biological calibration carboxylase chain classification codon comparative cooperation data databases demography diterpenes dna ecosystem energy environment european evolution factors financial flavonoids fossils genetic genetics genome geography govt hybridization intergenic international introns lamiaceae linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plants plastids pollen polymerase proteins rays reaction regression reproducibility research results ribosomal ribulose-bisphosphate sequence solar spacer specimen states study support temperature theorem time tobacco transpiration ultraviolet union united us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:17 as along with 2 groups biodiversity_conservation GrassBase
	Hormetic dose-response relationships in immunology: occurrence, quantitative features of the dose response, mechanistic foundations, and clinical implications. [My Copy] Crit Rev Toxicol, Vol. 35, No. 2-3. (2005), pp. 89-295. by E. J. Calabrese posted to adaptation animals comparative dosage dose-response drug effectsimmunology govt humans meta-analysis non-phs of pharmaceutical physiologicaldrug preparationsadministration relationship reproducibility research results study support terminology us bibtex-import by sameetmehta to the group Bioinformatics on 2006-05-14 20:19:57 as along with 1 group ProkaryoteInterestGroup

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Group: Bioinformatics - with tag results [21 articles] Export

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