Group: Bioinformatics - with tag review [121 articles] Export

Recent papers posted by members of the Bioinformatics group with tag review

	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to software review read_mapping deep_sequencing by jfr to the group Bioinformatics on 2009-11-10 17:28:25 as along with 29 people and 4 groups burak cthachuk hzoltan tonamswish heliopais giovenko torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Identifying protein-coding genes in genomic sequences [My Copy] Genome Biology, Vol. 10, No. 1. (30 January 2009), 201. by Jennifer Harrow, Alinda Nagy, Alexandre Reymond, et al.Tyler Alioto, Laszlo Patthy, Stylianos Antonarakis, Roderic Guigo posted to sequencing review by jfr to the group Bioinformatics on 2009-11-08 22:20:40 as along with 14 people and 1 group antonkratz robfsouza nlapalu renatomilani ArtemPankin hpaces guhjy michaelbarton idoerg jm12 pawelszczesny natstreet barriot druvus Khavkin's lab
	The limits of protein sequence comparison? [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 254-260. by William R. Pearson, Michael L. Sierk posted to sequence review protein comparison bioinformatics by svozil to the group Bioinformatics on 2009-08-17 08:25:59 as along with 3 people richardbickerton yylin BioNica
	Review of "Bioinformatics: A Computing Perspective" edited by Shuba Gopal, Anne Haake, Rhys Price Jones and Paul Tymann [My Copy] Algorithms for Molecular Biology, Vol. 4, No. 1. (24 June 2009), 9. by Dae W. Kim, Hong S. Park posted to bioinformatics book computing perspective review teaching textbook by dswan to the group Bioinformatics on 2009-07-06 11:24:36 as
	Ant colony optimization: Introduction and recent trends [My Copy] Physics of Life Reviews, Vol. 2, No. 4. (December 2005), pp. 353-373. by Christian Blum posted to ant_colony review swarm_intelligence tutorial by svozil to the group Bioinformatics on 2009-05-21 09:08:44 as along with 4 people and 1 group pverstra balicea hkaruna lop macc
	A Review on the Ant Colony Optimization Metaheuristic: Basis, Models and New Trends [My Copy] Mathware & Soft Computing, Vol. 9 (2002), pp. 141-175. by Oscar Cordon, Francisco Herrera, Thomas Stützle posted to ant_colony review swarm_intelligence by svozil to the group Bioinformatics on 2009-05-21 09:07:38 as
	Databases, models, and algorithms for functional genomics: a bioinformatics perspective. [My Copy] Molecular biotechnology, Vol. 29, No. 2. (February 2005), pp. 165-183. by G. B. Singh, H. Singh posted to bioinformatics review sequence by svozil to the group Bioinformatics on 2009-04-30 16:56:17 as
	Machine Learning and Its Applications to Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007), e116. by Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Drăghici posted to bioinformatics ml review by svozil to the group Bioinformatics on 2009-04-30 16:50:58 as along with 14 people and 2 groups colm rwst winterschlaefer aviad_work druvus giovenko Borelli skhadar julius cjeans asddd ciga nklee kmdaily SysbioMPI-TCells Computational_Information_Geometry
	Artificial intelligence techniques for bioinformatics. [My Copy] Appl Bioinformatics, Vol. 1, No. 4. (2002), pp. 191-222. by A. Narayanan, E. C. Keedwell, B. Olsson posted to ai bioinformatics decision_trees ga ml nearest-neighbor nn review by svozil to the group Bioinformatics on 2009-04-30 16:43:01 as along with 1 person gpalidwor
	Knowledge discovery in biology and biotechnology texts: a review of techniques, evaluation strategies, and applications. [My Copy] Critical reviews in biotechnology, Vol. 25, No. 1-2. (n 2005), pp. 31-52. by J. Natarajan, D. Berrar, C. J. Hack, W. Dubitzky posted to information_retrieval nlp review text-mining by svozil to the group Bioinformatics on 2009-04-22 07:44:06 as along with 2 people mitko lmichan
	An introduction to artificial neural networks in bioinformatics--application to complex microarray and mass spectrometry datasets in cancer studies [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 315-329. by Lee J. Lancashire, Christophe Lemetre, Graham R. Ball posted to neural_net review by barry to the group Bioinformatics on 2009-04-21 07:54:57 as along with 7 people giovenko jfr eliasman m509396 brianb nuin renatomilani
	Computational Approaches for Investigating Three-Dimensional Structures of RNA [My Copy] Malaysian Journal of Biochemistry and Molecular Biology, Vol. 16, No. 2. (2008), pp. 1-9. by Mohd Firdaus-Raih posted to bioinformatics graph review rna structure tertiary by svozil to the group Bioinformatics on 2009-04-14 19:52:02 as
	What makes a gene name? Named entity recognition in the biomedical literature. [My Copy] Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 357-369. by U. Leser, J. Hakenberg posted to ambiquity gene ner review text-mining by svozil to the group Bioinformatics on 2009-04-08 09:56:51 as along with 4 people and 1 group eesruiz Sjitprasutwit irenas miguel ImagCom - Biomedical Text Computing
	Term identification in the biomedical literature. [My Copy] J Biomed Inform, Vol. 37, No. 6. (December 2004), pp. 512-526. by M. Krauthammer, G. Nenadic posted to biomedical ner review text-mining by svozil to the group Bioinformatics on 2009-04-08 08:04:12 as along with 9 people and 4 groups artaban421 cisevol irenas kslibrarian bourne yas bhaddow kkaiser akastrin BergmanLab dbk-lab T_lab IEG
	GENOMICS AND NATURAL LANGUAGE PROCESSING [My Copy] Nat Rev Genet, Vol. 3, No. 8. (2002), pp. 601-610. by Mark D. Yandell, William H. Majoros posted to biomedical genomics nlp review text-mining by svozil to the group Bioinformatics on 2009-04-06 10:42:53 as along with 5 people and 1 group bayesian yas jpestian dejori TheresaNiederberger T_lab
	Getting to the (c)ore of knowledge: mining biomedical literature. [My Copy] Int J Med Inform, Vol. 67, No. 1-3. (4 December 2002), pp. 7-18. by B. de Bruijn, J. Martin posted to biomedical review text-mining by svozil to the group Bioinformatics on 2009-04-06 10:41:05 as along with 5 people and 2 groups artaban421 irenas Enro yas hpiwowar dbk-lab T_lab
	Hairpins in bookstacks: Information retrieval from biomedical text [My Copy] Brief Bioinform, Vol. 6, No. 3. (1 January 2005), pp. 222-238. by Hagit Shatkay posted to bioinformatics information_retrieval review by svozil to the group Bioinformatics on 2009-04-04 06:21:38 as along with 7 people and 3 groups artaban421 mitko eesruiz henk-cul guhjy yas hpiwowar ImagCom - Biomedical Text Computing dbmi-nlp T_lab
	Status of text-mining techniques applied to biomedical text [My Copy] Drug Discovery Today, Vol. 11, No. 7-8. (April 2006), pp. 315-325. by R. Erhardt, R. Schneider, C. Blaschke posted to bioinformatics review text-mining by svozil to the group Bioinformatics on 2009-04-04 06:20:07 as along with 18 people and 1 group holopoj mitko fisherp liblab Zephyrus ogenex lesikv henk-cul bqchinh Enro guhjy hpiwowar ibuch mroos TheresaNiederberger akastrin aliekens irenas AID
	A survey of current work in biomedical text mining [My Copy] Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 57-71. by Aaron M. Cohen, William R. Hersh posted to bioinformatics classification extraction ner relationship review synonym text-mining by svozil to the group Bioinformatics on 2009-04-04 06:19:09 as along with 30 people and 8 groups artaban421 lmichan daforerog guelke eesruiz blogbrain fitzgeraldp2 henk-cul lauras mitko vkwn cisevol irenas carlblesius route145 yas natsu t11 hpiwowar fisherp biblio24 bhaddow johnkork c061978 kkaiser benfqt farzanehs satre lillejul TheresaNiederberger BergmanLab dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab Evidence-based-medicine IEG
	Frontiers of biomedical text mining: current progress [My Copy] Brief Bioinform (30 October 2007), bbm045. by Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B. Cohen posted to bioinformatics ner review text-mining by svozil to the group Bioinformatics on 2009-04-04 06:15:49 as along with 20 people and 2 groups artaban421 Effie eitanla1 junehlee Keywan arafalov henk-cul Waderoad vkwn farzanehs bqchinh cisevol guhjy yas dullhunk hpiwowar wchapman yggdrasil TheresaNiederberger irenas BergmanLab dbmi-nlp
	Extracting interactions between proteins from the literature. [My Copy] Journal of biomedical informatics, Vol. 41, No. 2. (15 April 2008), pp. 393-407. by D. Zhou, Y. He posted to bioinformatics ppi review text-mining by svozil to the group Bioinformatics on 2009-04-04 06:11:04 as along with 5 people robert85 liblab satre gmonce guhjy
	Is protein classification necessary? Toward alternative approaches to function annotation [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (5 June 2009), pp. 363-368. by Donald Petrey, Barry Honig posted to protein_annotation protein_function review by barry to the group Bioinformatics on 2009-03-11 20:25:50 as along with 8 people and 3 groups dfdong sconlan robfsouza davidalee sobolevnrm janasont idoerg fgibson Orengo Group Journal Picks baker-group structural_bioinformatics
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted to protein_protein review server by barry to the group Bioinformatics on 2009-03-04 04:46:11 as along with 12 people and 2 groups dfdong jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis apaydin semin renatomilani svozil structural_bioinformatics McCammon
	A roadmap of clustering algorithms: finding a match for a biomedical application [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 297-314. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted to clustering review by barry to the group Bioinformatics on 2009-03-04 04:40:43 as along with 14 people and 1 group jfr mhamidi eliasman Gorzomagnificent reyez brianb nuin m509396 jmeppley tmmurali tonamswish VGreiff sobolevnrm svozil baker-group
	Computational challenges in systems biology [My Copy] Computer Science Review, Vol. 3, No. 1. (February 2009), pp. 1-17. by Allison P. Heath, Lydia E. Kavraki posted to biology computational graph pathways review systems-biology by behindtherabbit to the group Bioinformatics on 2009-02-25 16:04:07 as along with 1 person AbnerCYH
	Mutation Patterns in the Human Genome: More Variable Than Expected [My Copy] PLoS Biol, Vol. 7, No. 2. (3 February 2009), e1000028. by Laurent Duret posted to genome review by barry to the group Bioinformatics on 2009-02-24 21:55:56 as along with 7 people and 1 group Garamonfok rdiaz leelarcombe idoerg aprasad djkt gjuggler structural_bioinformatics
	Next-generation DNA sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to 454 bioinformatics dna emulsion genomics heliscope illumina next-gen pcr polonator review sanger sequencing solexa solid by behindtherabbit to the group Bioinformatics on 2008-12-08 18:20:22 as along with 47 people and 2 groups burak Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Roswell Cancer Crosstalk Oxford Virology
	Creative elements: network-based predictions of active centres in proteins and cellular and social networks [My Copy] Trends in Biochemical Sciences, Vol. 33, No. 12. (20 December 2008), pp. 569-576. by P. Csermely posted to networks review small_world by barry to the group Bioinformatics on 2008-10-25 18:28:13 as along with 6 people Diego_Prada abhishek_tiwari sg45653 grahamc nilanjanroy cmmorel
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to correlated_mutations phylogeny protein_protein review by barry to the group Bioinformatics on 2008-10-02 20:24:17 as along with 8 people and 2 groups chica biomcgary qluo balicea grahamc fhsantanna marti sjcockell structural_bioinformatics McCammon
	Flexible ligand docking to multiple receptor conformations: a practical alternative. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (April 2008), pp. 178-184. by M. Totrov, R. Abagyan posted to docking md_simulation review by barry to the group Bioinformatics on 2008-10-02 19:48:14 as along with 3 people and 2 groups klexa oteri aqeel structural_bioinformatics McCammon
	The structure of protein evolution and the evolution of protein structure [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Richard A. Goldstein posted to fold_space protein_evolution protein_structure review by barry to the group Bioinformatics on 2008-10-02 19:46:30 as along with 5 people and 2 groups dfdong yuslinaz bpb zwang cmzmasek structural_bioinformatics McCammon
	Understanding mechanisms governing protein-protein interactions from synthetic binding interfaces [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Anthony A. Kossiakoff, Shohei Koide posted to protein_dynamics protein_protein review by barry to the group Bioinformatics on 2008-10-02 19:21:01 as along with 2 people and 2 groups grahamc paulschlesinger structural_bioinformatics McCammon
	Getting Started in Computational Immunology [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000128. by Steven H. Kleinstein posted to immunology review by barry to the group Bioinformatics on 2008-09-05 21:58:23 as along with 13 people and 1 group tomhebbron svenrahmann VGreiff akraemer najwvandijk Zephyrus nuin reyez dakelley GeeSharpMinor rebeccamancy AbnerCYH jjray Roswell Cancer Crosstalk
	A comparison of common programming languages used in bioinformatics [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 82. by Mathieu Fourment, Michael Gillings posted to programming review by barry to the group Bioinformatics on 2008-08-21 18:01:48 as along with 18 people and 1 group reyez antonkratz daforerog treangen natstreet nlapalu druvus jamselem dullhunk laughcry ibuch urgi sci91078 renatomilani xili03 phoenixzxl guhjy chad_davis structural_bioinformatics
	Computational methods for transcriptional regulation. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221. by E. D. Siggia posted to microarrays review transcription_factor by barry to the group Bioinformatics on 2008-04-03 19:42:48 as along with 7 people and 1 group dpollard koller bertelsen Borelli nklee balicea jjray EisenLab
	Computational epigenetics [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 1-10. by Christoph Bock, Thomas Lengauer posted to epigenetics review by frohike to the group Bioinformatics on 2008-03-28 16:00:52 as along with 17 people and 1 group operon iris42 pawelsobko huali suizifish mmartin sebastien_vigneau ealloza djkt timflutre cjeans epigenetics cabbagezs barriot Ema Thomasah guhjy SIMR bioinformatics
	The biology of cancer [My Copy] (2007) by R. A. Weinberg posted to biology cancer review by frohike to the group Bioinformatics on 2008-03-26 18:38:27 as
	What is principal component analysis? [My Copy] Nature Biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringner posted to pca review by barry to the group Bioinformatics on 2008-03-21 19:36:38 as along with 70 people and 2 groups krapnik singhsh Jporci tnhh ruvido ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm fryanpan kengg rvosa dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group FAB-lab
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to data microarray proteomics review by frohike to the group Bioinformatics on 2008-03-21 14:47:37 as along with 17 people Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang bertelsen ptrobajo jfr guhjy tmmurali dwf cjeans nedwards shikin blackm0k brianb
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted to allosteric protein_dynamics protein_structure review by barry to the group Bioinformatics on 2007-12-04 22:56:25 as along with 10 people and 3 groups allmensch jrperillaj aqeel ruvido cactus sobolevnrm jennifermbui higueruelo LamBras jmccammon structural_bioinformatics baker-group McCammon
	Correlated substitution analysis and the prediction of amino acid structural contacts [My Copy] Brief Bioinform (13 November 2007), bbm052. by David S. Horner, Walter Pirovano, Graziano Pesole posted to correlated_mutations review by barry to the group Bioinformatics on 2007-11-27 23:34:46 as along with 6 people and 2 groups mgomes qluo RebeccaHamer zwang sobolevnrm Lombardo_7 structural_bioinformatics baker-group
	A complex profile of protein elongation: translating chemical energy into molecular movement [My Copy] Structure, Vol. 4, No. 3. (March 1996), pp. 229-238. by Kenton Abel, Frances Jurnak posted to review ntpases g_proteins ef-tu by barry to the group Bioinformatics on 2007-09-20 23:01:17 as along with 1 group structural_bioinformatics
	A Ras by Any Other Name [My Copy] Mol. Cell. Biol., Vol. 21, No. 5. (1 March 2001), pp. 1441-1443. by Dafna Bar-Sagi posted to review ras by barry to the group Bioinformatics on 2007-09-20 00:03:36 as along with 1 group structural_bioinformatics
	The pathway to signal achievement [My Copy] Nature, Vol. 365, No. 6449. (28 October 1993), pp. 781-783. by Sean E. Egan, Robert A. Weinberg posted to review ras by barry to the group Bioinformatics on 2007-09-19 23:54:45 as along with 1 group structural_bioinformatics
	The Chemistry of Protein Catalysis [My Copy] Journal of Molecular Biology, Vol. 372, No. 5. (5 October 2007), pp. 1261-1277. by Gemma L. Holliday, Daniel E. Almonacid, John B. Mitchell, Janet M. Thornton posted to review catalytic_mechanism by barry to the group Bioinformatics on 2007-09-17 17:53:36 as along with 7 people and 1 group ucbcjbm cjeans zwang grottenolm jwm sim82 gemmalholliday structural_bioinformatics
	Keeping dry and crossing membranes. [My Copy] Nat Biotechnol, Vol. 22, No. 9. (September 2004), pp. 1081-1084. by A. Fernández posted to review dehydron by barry to the group Bioinformatics on 2007-09-13 19:06:23 as along with 1 person and 1 group BragilMassoud structural_bioinformatics
	Graph-based methods for analysing networks in cell biology. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (1 September 2006), pp. 243-255. by Tero Aittokallio, Benno Schwikowski posted to review interaction_maps graph by barry to the group Bioinformatics on 2007-08-27 20:04:16 as along with 11 people and 1 group daforerog abhishek_tiwari svozil ajbattle cswinburne yaredo tmmurali aswin grahamc jmarcelino iris_2001 structural_bioinformatics
	Protein Flexibility and Mobility in Structure-Based Drug Design [My Copy] Frontiers in Drug Design & Discovery: Structure-Based Drug Design in the 21st Century (March 2007), pp. 455-476. by Aqeel Ahmed, Sina Kazemi, Holger Gohlke posted to review protein_structure protein_ligand protein_dynamics drug_design docking by barry to the group Bioinformatics on 2007-08-13 19:47:46 as along with 2 people and 1 group fl aqeel structural_bioinformatics
	Hydrogen bonding in globular proteins [My Copy] Progress in Biophysics and Molecular Biology, Vol. 44, No. 2. (1984), pp. 97-179. by E. N. Baker, R. E. Hubbard posted to review protein_structure hbond by barry to the group Bioinformatics on 2007-06-21 22:53:50 as along with 1 group structural_bioinformatics
	Supramolecular Structure and Dynamics Special Feature: Crystalline molecular machines: Encoding supramolecular dynamics into molecular structure [My Copy] PNAS, Vol. 102, No. 31. (2 August 2005), pp. 10771-10776. by Miguel A. Garcia-Garibay posted to superamolecular review by barry to the group Bioinformatics on 2007-05-09 00:07:02 as along with 1 person and 1 group Scis0000002 structural_bioinformatics

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celegans	2215
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caenorhabditis_elegans	2210
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protein_structure	106
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Group: Bioinformatics - with tag review [121 articles] Export

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