Group: Bioinformatics - with tag sequencing [20 articles] Export

Recent papers posted by members of the Bioinformatics group with tag sequencing

	Identifying protein-coding genes in genomic sequences [My Copy] Genome Biology, Vol. 10, No. 1. (30 January 2009), 201. by Jennifer Harrow, Alinda Nagy, Alexandre Reymond, et al.Tyler Alioto, Laszlo Patthy, Stylianos Antonarakis, Roderic Guigo posted to sequencing review by jfr to the group Bioinformatics on 2009-11-08 22:20:40 as along with 14 people and 1 group antonkratz robfsouza nlapalu renatomilani ArtemPankin hpaces guhjy michaelbarton idoerg jm12 pawelszczesny natstreet barriot druvus Khavkin's lab
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to solexa sequencing primary platfrom illumina data application analysis by dswan to the group Bioinformatics on 2009-08-20 10:39:18 as along with 21 people and 3 groups n00c heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj torfinnnome rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares aprasad niallhaslam idoerg BergmanLab SIMR bioinformatics Journal picks
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted to throughput sequencing methods metagenomics high by danmaclean to the group Bioinformatics on 2009-08-11 14:51:25 as along with 7 people and 1 group halinat kinestetika jgill jonilaserson skembel druvus orzenil iSEEM
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to characterisation comparison generation next sequencing technologies transcriptome by dswan to the group Bioinformatics on 2009-08-11 11:21:23 as along with 19 people and 3 groups hzoltan daveGerrard daforerog feeldead n00c debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Journal picks LabDros BergmanLab
	Single-molecule sequencing of an individual human genome [My Copy] Nature Biotechnology, Vol. 27, No. 9. (10 August 2009), pp. 847-850. by Dmitry Pushkarev, Norma F. Neff, Stephen R. Quake posted to high sequencing throughput by danmaclean to the group Bioinformatics on 2009-08-11 09:34:13 as along with 25 people and 2 groups JamesBarger n00c ethanmj MurphysLab leliavski inesdesantiago fenghezi megraw kintoki neils daforerog gangcai mqbphcw3 jmanning2k jonilaserson druvus alexknight qayub natstreet mtagaya kinestetika guhjy installe psique SeaBird Journal picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to alignment application gen improved next read sequencing short tool ultrafast by dswan to the group Bioinformatics on 2009-07-21 10:28:12 as along with 27 people and 5 groups nuin hzoltan agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Journal picks
	miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W68-76. by Michael Hackenberg, Martin Sturm, David Langenberger, Juan M. Falcon-Perez, Ana M. Aransay posted to analysis application detection experiments gen generation microrna next sequencing site tool web by dswan to the group Bioinformatics on 2009-06-30 10:22:01 as along with 13 people and 1 group Peiyong hzoltan druvus heliopais orzenil fishtank tonamswish natstreet guhjy fenghezi pengchy ealloza daforerog microRNA
	PanGEA: Identification of allele specific gene expression using the 454 technology [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 143. by Robert Kofler, Tatiana T. Torres, Tamas Lelley, Christian Schlotterer posted to 454 allele application expression gen gene identifying next sequencing specific by dswan to the group Bioinformatics on 2009-06-02 10:29:03 as along with 5 people GustavoLacerda orzenil natstreet rschulz AlexBateman
	MapView: visualization of short reads alignment on a desktop computer [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1554-1555. by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted to alignment application computer desktop gen next reads sequencing short visualisation by dswan to the group Bioinformatics on 2009-05-29 09:06:41 as along with 9 people seb1 guhjy jmeppley dakelley n00c idonaldson operon natstreet druvus
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to sequencing by barry to the group Bioinformatics on 2009-05-18 20:07:51 as along with 22 people and 3 groups heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman Bioinformatics - CRUK Mycology Journal picks
	Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 221. by Joshua Bloom, Zia Khan, Leonid Kruglyak, Mona Singh, Amy Caudy posted to 2 colour comparison differential expression gen gene measuring microarray next quantitation read sequencing short by dswan to the group Bioinformatics on 2009-05-13 09:50:23 as along with 9 people hzoltan heliopais GustavoLacerda GeeSharpMinor n00c TRHvidsten natstreet druvus neils
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to enrichment sequencing short-reads by Thaverkamp to the group Bioinformatics on 2009-04-29 07:50:21 as along with 19 people and 1 group hzoltan darian n00c polivares idonaldson tonamswish ewilban1 humburg natstreet druvus stajich cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Mycology
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted to acgh bioinformatics cnv copy genomics microarray number personal rearrangement sequencing solexa variation by sleepingcell to the group Bioinformatics on 2009-03-11 03:51:41 as along with 18 people hzoltan biovils stubrown cthachuk GustavoLacerda n00c darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan neils magusina
	Next-generation DNA sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to 454 bioinformatics dna emulsion genomics heliscope illumina next-gen pcr polonator review sanger sequencing solexa solid by behindtherabbit to the group Bioinformatics on 2008-12-08 18:20:22 as along with 47 people and 2 groups burak Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Roswell Cancer Crosstalk Oxford Virology
	Accuracy and quality of massively parallel DNA pyrosequencing [My Copy] Genome Biology, Vol. 8, No. 7. (20 July 2007), R143. by Susan Huse, Julie Huber, Hilary Morrison, Mitchell Sogin, David Welch posted to sequencing by sleepingcell to the group Bioinformatics on 2007-08-03 03:54:54 as along with 18 people and 2 groups nfparrish druvus n00c jlgreen Thaverkamp orzenil mmartin floatingpoint Huub_odc gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Olaf_Ilzins bozdagd iSEEM gatech-compgenomics
	Toward nanoscale genome sequencing. [My Copy] Trends Biotechnol (18 July 2007) by Declan Ryan, Maryam Rahimi, John Lund, Ranjana Mehta, Babak A A. Parviz posted to sequencing by sleepingcell to the group Bioinformatics on 2007-08-03 03:54:45 as along with 1 person cmmorel
	DNA sequencing. A new window on how genomes work. [My Copy] Science, Vol. 316, No. 5828. (25 May 2007), pp. 1120-1121. by E. Pennisi posted to sequencing by sleepingcell to the group Bioinformatics on 2007-05-27 09:22:28 as along with 1 person olympos
	Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment [My Copy] Genome Research, Vol. 8, No. 3. (1 March 1998), pp. 175-185. by Brent Ewing, Ladeana Hillier, Michael C. Wendl, Phil Green posted to sequencing by sleepingcell to the group Bioinformatics on 2007-05-21 10:09:10 as along with 5 people tfuji balajis giovanni werwiesel bozdagd
	Base-Calling of Automated Sequencer Traces UsingPhred. II. Error Probabilities [My Copy] Genome Research, Vol. 8, No. 3. (1 March 1998), pp. 186-194. by Brent Ewing, Phil Green posted to sequencing by sleepingcell to the group Bioinformatics on 2007-05-21 10:08:58 as along with 6 people and 1 group tfuji jbhiatt balajis indigoviolet giovanni bozdagd EisenLab
	Genomic mapping by fingerprinting random clones: a mathematical analysis. [My Copy] Genomics, Vol. 2, No. 3. (April 1988), pp. 231-239. by E. S. Lander, M. S. Waterman posted to sequencing by sleepingcell to the group Bioinformatics on 2007-04-03 05:30:58 as along with 6 people sameersoi ggrot RMGraze joshuashen bluto farhat

Note: You may cite this page as: http://www.citeulike.org/group/664/tag/sequencing

solexa	149
genome	140
illumina	137
genomics	116
454	109
review	104
assembly	89
genome-analyzer	75
bioinformatics	69
method	66
metagenomics	65
human	64
software	57
cancer	56
cnv	56
dna	52
snp	50
rna	49
algorithm	43
alignment	43
analyzer	43
transcriptome	41
expression	37
evolution	36
methods	36
fourstar	35
mapping	34
microarray	34
technology	34
genetics	32
next_generation	31
nextgen	27
short-read	27
variation	27
gene	26
bacteria	25
fivestar	24
solid	24
transcriptomics	24
transcription	23
high	22
methylation	22
next	22
snps	22
chip	21
next-generation	21
rna-seq	21
throughput	21
resequencing	20
short_read_analysis	20
analysis	19
mirna	19
threestar	19
ngs	18
pcr	18
high-throughput	17
mutation	17
pyrosequencing	17
splicing	17
yeast	17
annotation	16
chip-seq	16
genotyping	16
sanger	16
subassemblypaper	16
capture	15
generation	15
nanopore	15
statistics	15
application	14
exome	14
microrna	14
polymorphism	14
chromatin	13
hiv	13
next-gen	13
parallel	13
popgen	13
association	12
gen	12
local-alignment	12
nextgensequencing	12
mouse	11
multiplexing	11
rna_seq	11
short	11
amaranthus	10
cpg	10
denovo	10
design	10
detection	10
drosophila	10
epigenetics	10
geneticspaper	10
model	10
sequence	10
comparison	9
microbial	9
shortread	9
tool	9

Group: Bioinformatics - with tag sequencing [20 articles] Export

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