Group: Bioinformatics - with tag simulation [22 articles] Export

Recent papers posted by members of the Bioinformatics group with tag simulation

	Distribution modeling and simulation of gene expression data [My Copy] Computational Statistics & Data Analysis, Vol. In Press, Accepted Manuscript by Rudolph S. Parrish, Spencer, Ping Xu posted to expression microarray modeling simulation by robertvandenberg to the group Bioinformatics on 2008-03-31 08:11:25 as along with 2 people guhjy bertelsen
	A comparison of various methods for multivariate regression with highly collinear variables [My Copy] Statistical Methods and Applications, Vol. 16, No. 2. (August 2007), pp. 193-228. by Kiers, Henk, Smilde, Age posted to multivariate regression simulation validation by robertvandenberg to the group Bioinformatics on 2008-03-27 08:53:31 as along with 1 person guhjy
	iFold: a platform for interactive folding simulations of proteins. [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694. by S. Sharma, F. Ding, H. Nie, et al.D. Watson, A. Unnithan, J. Lopp, D. Pozefsky, N. V. Dokholyan posted to simulation publications protein_folding by shantanu to the group Bioinformatics on 2007-04-26 00:50:16 as along with 1 person and 7 groups plofje structural_bioinformatics MathBio Biostatistics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Multiscale Modeling of Nucleosome Dynamics [My Copy] Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1457-1470. by Shantanu Sharma, Feng Ding, Nikolay V. Dokholyan posted to simulation publications nucleosome chromatin by shantanu to the group Bioinformatics on 2007-04-26 00:49:03 as along with 5 people and 8 groups afenley aalibes choonpeng skoch3 phisics structural_bioinformatics MathBio Biostatistics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Koch_Lab
	Serine proteases: An ab initio molecular dynamics study [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. 4. (1999), pp. 611-618. by L. De Santis, P. Carloni posted to md simulation by sangeetha to the group Bioinformatics on 2006-12-29 07:07:46 as along with 1 group insilicodrug
	A molecular mechanics/grid method for evaluation of ligand-receptor interactions [My Copy] Journal of Computational Chemistry, Vol. 16, No. 4. (1995), pp. 454-464. by Brock A. Luty, Zelda R. Wasserman, Pieter F. W. Stouten, Nicholas C. Hodge, Martin Zacharias, Andrew J. Mccammon posted to md simulation by sangeetha to the group Bioinformatics on 2006-12-29 07:05:59 as along with 1 person and 1 group papatonyhill insilicodrug
	Identification of protein coding regions in genomic DNA [My Copy] J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as
	Systematic identification and analysis of exonic splicing silencers [My Copy] Cell, Vol. 119, No. 6. (Dec 2004), pp. 831-845. by Z. Wang, M. E. Rolish, G. Yeo, V. Tung, M. Mawson, C. B. Burge posted to 0900 20050317 a-bgenetics acidgenetics algorithms analysis animals base cells cluster computer cultured data elements exonsgenetics f-hgenetics gene govt group heterogeneous-nuclear humans library molecular non-phs non-us phs regulatory research ribonucleic ribonucleoprotein rna sequence sequences silencer simulation splicinggeneticsphysiology support transcriptionalgenetics us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:25 as
	Gene finding with a hidden Markov model of genome structure and evolution [My Copy] Bioinformatics, Vol. 19, No. 2. (Jan 2003), pp. 219-227. by J. S. Pedersen, J. Hein posted to 0500 20030828 algorithms alignmentmethods analysis animals chains computer dnamethods evolution genetic genome govt homology humans markov mice models molecular non-us phylogeny processes research sequence simulation statistical stochastic support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:58 as
	GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [My Copy] Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618. by J. Besemer, A. Lomsadze, M. Borodovsky posted to 1001 20010728 algorithms alignment and archaeal archaealgenetics bacillus bacterial bacterialgenetics base biologymethods chains codon coligenetics computational computer databases escherichia evolution framesgenetics functions genes geneticgenetics genome initiatorgenetics internet likelihood markov molecular of open overlappinggenetics reading reproducibility results sensitivity sequence simulation software specificity subtilisgenetics transcription translation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as
	Pre-mRNA secondary structure prediction aids splice site prediction [My Copy] Pac Symp Biocomput (2002), pp. 223-234. by D. J. Patterson, K. Yasuhara, W. L. Ruzzo posted to 0400 20021003 acid analysis computer conformation exons functions genetic govt likelihood messengerchemistrygenetics models non-phs nucleic of precursorschemistry reproducibility results rna sequence simulation software splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:20 as
	Resolution of a supertree/supermatrix paradox. [My Copy] Syst Biol, Vol. 51, No. 4. (Aug 2002), pp. 652-64. by John Gatesy, Conrad Matthee, Rob Desalle, Cheryl Hayashi posted to 14530139 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Performance of flip supertree construction with a heuristic algorithm. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 299-308. by Oliver Eulenstein, Duhong Chen, Gordon J. Burleigh, David F. Baca, Michael J. Sanderson posted to 15205054 algorithms alligators and animals classification comparative computer crocodiles data design govt interpretation meta-analysis non-phs phylogeny research simulation statistical study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees. [My Copy] Syst Biol, Vol. 52, No. 6. (Dec 2003), pp. 839-48. by Olaf posted to 14668120 algorithms alignment alligators analysis and angiosperms animals array biodiversity calibration carnivora classification cluster comparative computer crocodiles data design dna evolution factors fossils genetic genetics govt graphics interface interpretation meta-analysis models molecular mutational non-phs non-us oligonucleotide pedigree phylogeny population re research search sequence simulation software statistical study support theoretical time us user-computer variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase
	Supertree construction in the genomic age. [My Copy] Methods Enzymol, Vol. 395 (2005), pp. 745-57. by Olaf posted to 15865993 animals artiodactyla biology carnivora classification comparative computational computer data databases design dolphins evolution extramural female functions fungal genetic genome genomics govt interpretation likelihood male models nih non-phs non-us phs phylogeny research ruminants saccharomyces simulation species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase
	Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. [My Copy] Syst Biol, Vol. 50, No. 4. (Aug 2001), pp. 565-79. by Bininda O. R. Emonds, M. J. Sanderson posted to 12116654 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as along with 2 groups biodiversity_conservation GrassBase
	A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. [My Copy] Genome Res., Vol. 12, No. 7. (Jul 2002), pp. 1080-90. by Vincent Daubin, Manolo Gouy, Guy Perrière posted to 12097345 acid algorithms alignment alligators analysis and angiosperms animals array artiodactyla b bacterial base bayes behavior biodiversity biology biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computational computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genes genetic genetics genome govt graphics group hibernation homology interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us nucleic oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics structural study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:23 as along with 2 groups biodiversity_conservation GrassBase
	Clann: investigating phylogenetic information through supertree analyses. [My Copy] Bioinformatics, Vol. 21, No. 3. (Feb 2005), pp. 390-2. by C. J. Creevey, J. O. Mcinerney posted to 15374874 acid algorithms analysis animal animals artiodactyla bacteria bacterial biological biology carnivora classification climate cluster comparative computational computer computing data databases decision design dna dolphins drosophila environment evolution extramural female functions fungal fungi gene genetic genome genomics geography govt groups horizontal hybridization interpretation introns likelihood male mathematical models molecular nih non-phs non-us nucleic of pedigree phs phylogeny pinus plant plants population proteins regression reproduction research ribosomal roots ruminants saccharomyces seeds simulation software species specificity statistical study support transfer trees us variance whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as along with 2 groups biodiversity_conservation GrassBase
	Does a tree-like phylogeny only exist at the tips in the prokaryotes? [My Copy] Proc Biol Sci, Vol. 271, No. 1557. (Dec 2004), pp. 2551-8. by Christopher J. Creevey, David A. Fitzpatrick, Gayle K. Philip, et al.Rhoda J. Kinsella, Mary J. O'Connell, Melissa M. Pentony, Simon A. Travers, Mark Wilkinson, James O. Mcinerney posted to 15615680 animal animals artiodactyla bacteria bacterial biology carnivora classification comparative computational computer data databases design dolphins drosophila evolution extramural female functions fungal fungi gene genetic genome genomics govt groups horizontal interpretation introns likelihood male models molecular nih non-phs non-us phs phylogeny plant plants population proteins research ribosomal ruminants saccharomyces simulation species specificity statistical study support transfer us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:21 as along with 2 groups biodiversity_conservation GrassBase
	Rainbow: a toolbox for phylogenetic supertree construction and analysis. [My Copy] Bioinformatics, Vol. 20, No. 16. (Nov 2004), pp. 2872-3. by D. Chen, O. Eulenstein, Fernández D. Baca posted to 15145807 algorithms alignment alligators analysis and animals array classification cluster comparative computer crocodiles data design dna govt graphics interface interpretation meta-analysis mutational non-phs oligonucleotide phylogeny research sequence simulation software statistical study support us user-computer bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:20 as along with 2 groups biodiversity_conservation GrassBase
	A phylogeny of the tinamous (aves: palaeognathiformes) based on integumentary characters. [My Copy] Syst Biol, Vol. 51, No. 6. (Dec 2002), pp. 959-79. by Sara Bertelli, Norberto P. Giannini, Pablo A. Goloboff posted to 12554461 algorithms alignment alligators analysis and angiosperms animals array b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:08 as along with 2 groups biodiversity_conservation GrassBase
	Inference of transcriptional regulatory network by two-stage constrained space factor analysis. [My Copy] Bioinformatics, Vol. 21, No. 21. (2005), pp. 4033-8. by T. Yu, K. C. Li posted to algorithms analysis automatedmethods computer expression factor factorsmetabolism gene genetic geneticsphysiology govt models non-phs pattern profilingmethods proteomemetabolism recognition regulationphysiology research signal simulation statistical support trans-activation transcription transductionphysiology us bibtex-import by sameetmehta to the group Bioinformatics on 2006-05-14 20:19:59 as along with 1 group ProkaryoteInterestGroup

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Group: Bioinformatics - with tag simulation [22 articles] Export

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