Group: Bioinformatics - with tag study [74 articles] Export

Recent papers posted by members of the Bioinformatics group with tag study

	ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 358. by Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasnogor posted to web study normalisation modular mining microarray meta cross array application analysis by dswan to the group Bioinformatics on 2009-11-06 17:04:14 as along with 4 people and 1 group shikin sillitoe heliopais neils Orengo Group Journal Picks
	Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1655-1661. by Chunrong Cheng, Kui Shen, Chi Song, Jianhua Luo, George C. Tseng posted to adjustment analysis calibration enhance gene inter meta microrray normalisation prediction ratio scheme study wise by dswan to the group Bioinformatics on 2009-06-18 11:12:28 as along with 3 people jfr zufar rdiaz
	TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. [My Copy] Genes Dev, Vol. 19, No. 8. (2005), pp. 955-64. by N. Bachman, M. E. Gelbart, T. Tsukiyama, J. D. Boeke posted to genome-chromatin us transfergenetics transcription tfiiibgenetics support subunitsgenetics study specificity species saccharomyces rna retroelementsgenetics research recombination reaction proteinsgenetics protein primers polymerase phs nucleosomesgeneticsmetabolism nih immunoprecipitation govt geneticgenetics factorsgenetics factor extramural dna disassemblygenetics comparative chromatin chain cerevisiaegenetics cerevisiae assembly and adenosinetriphosphatasegenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:22 as along with 1 group ProkaryoteInterestGroup
	Identification of SATB2 as the cleft palate gene on 2q32-q33. [My Copy] Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501. by D. R. Fitzpatrick, I. M. Carr, L. Mclaren, et al.J. P. Leek, P. Wightman, K. Williamson, P. Gautier, N. Mcgill, C. Hayward, H. Firth, A. F. Markham, J. A. Fantes, D. T. Bonthron posted to genome-chromatin weight translocation transcription tertiary support study structure situ sequence research regulation reading proteins protein physical phylogeny palategenetics palatecytology pair open non-us motifs molecular mice mapping in hybridization humans human homology govt genetic genes gene frames fluorescence expression exons drosophila disassemblygenetics developmental data cultured comparative cleft chromosomes chromosome chromatin cells base assembly animals and amino acid 2 by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:18 as along with 1 group ProkaryoteInterestGroup
	Gene identification in novel eukaryotic genomes by self-training algorithm [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506. by A. Lomsadze, Ter V. Hovhannisyan, Y. O. Chernoff, M. Borodovsky posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	A non-EST-based method for exon-skipping prediction [My Copy] Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623. by R. Sorek, R. Shemesh, Y. Cohen, O. Basechess, G. Ast, R. Shamir posted to 0500 20040924 acid alternative animals biologymethods comparative computational databases exons expressed genetic genome human humans introns messengergenetics mice models nucleic rna sequence splicing study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Accurate identification of alternatively spliced exons using support vector machine [My Copy] Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 897-901. by G. Dror, R. Sorek, R. Shamir posted to 0900 20050713 algorithms alignmentmethods alternative analysis animals artificial automatedmethods chromosome comparative conserved dnamethods evolution exonsgenetics govt humans intelligence mappingmethods mice molecular non-us pattern recognition research sequence sequencegenetics software splicinggenetics study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Computational analysis of full-length mouse cDNAs compared with human genome sequences [My Copy] Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677. by S. Kondo, A. Shinagawa, T. Saito, et al.H. Kiyosawa, I. Yamanaka, K. Aizawa, S. Fukuda, A. Hara, M. Itoh, J. Kawai, K. Shibata, Y. Hayashizaki posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Genome-wide assembly and analysis of alternative transcripts in mouse [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754. by A. A. Sharov, D. B. Dudekula, M. S. Ko posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as
	Gene structure prediction and alternative splicing analysis using genomically aligned ESTs [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900. by Z. Kan, E. C. Rouchka, W. R. Gish, D. J. States posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	How prevalent is functional alternative splicing in the human genome? [My Copy] Trends Genet, Vol. 20, No. 2. (Feb 2004), pp. 68-71. by R. Sorek, R. Shamir, G. Ast posted to 0500 20040310 alternative comparative evolution exons expressed genetic genome human humans introns models molecular rna sequence sites splice splicinggenetics study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Stochastic models inspired by hybridization theory for short oligonucleotide arrays [My Copy] J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893. by Z. Wu, R. A. Irizarry posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as
	Complete sequencing and characterization of 21,243 full-length human cDNAs [My Copy] Nat Genet, Vol. 36, No. 1. (Jan 2004), pp. 40-45. by T. Ota, Y. Suzuki, T. Nishikawa, et al.T. Otsuki, T. Sugiyama, R. Irie, A. Wakamatsu, K. Hayashi, H. Sato, K. Nagai, K. Kimura, H. Makita, M. Sekine, M. Obayashi, T. Nishi, T. Shibahara, T. Tanaka, S. Ishii, J. Yamamoto, K. Saito, Y. Kawai, Y. Isono, Y. Nakamura, K. Nagahari, K. Murakami, T. Yasuda, T. Iwayanagi, M. Wagatsuma, A. Shiratori, H. Sudo, T. Hosoiri, Y. Kaku, H. Kodaira, H. Kondo, M. Sugawara, M. Takahashi, K. Kanda, T. Yokoi, T. Furuya, E. Kikkawa, Y. Omura, K. Abe, K. Kamihara, N. Katsuta, K. Sato, M. Tanikawa, M. Yamazaki, K. Ninomiya, T. Ishibashi, H. Yamashita, K. Murakawa, K. Fujimori, H. Tanai, M. Kimata, M. Watanabe, S. Hiraoka, Y. Chiba, S. Ishida, Y. Ono, S. Takiguchi, S. Watanabe, M. Yosida, T. Hotuta, J. Kusano, K. Kanehori, Takahashi A. Fujii, H. Hara, T. O. Tanase, Y. Nomura, S. Togiya, F. Komai, R. Hara, K. Takeuchi, M. Arita, N. Imose, K. Musashino, H. Yuuki, A. Oshima, N. Sasaki, S. Aotsuka, Y. Yoshikawa, H. Matsunawa, T. Ichihara, N. Shiohata, S. Sano, S. Moriya, H. Momiyama, N. Satoh, S. Takami, Y. Terashima, O. Suzuki, S. Nakagawa, A. Senoh, H. Mizoguchi, Y. Goto, F. Shimizu, H. Wakebe, H. Hishigaki, T. Watanabe, A. Sugiyama, M. Takemoto, B. Kawakami, M. Yamazaki, K. Watanabe, A. Kumagai, S. Itakura, Y. Fukuzumi, Y. Fujimori, M. Komiyama, H. Tashiro, A. Tanigami, T. Fujiwara, T. Ono, K. Yamada, Y. Fujii, K. Ozaki, M. Hirao, Y. Ohmori, A. Kawabata, T. Hikiji, N. Kobatake, H. Inagaki, Y. Ikema, S. Okamoto, R. Okitani, T. Kawakami, S. Noguchi, T. Itoh, K. Shigeta, T. Senba, K. Matsumura, Y. Nakajima, T. Mizuno, M. Morinaga, M. Sasaki, T. Togashi, M. Oyama, H. Hata, M. Watanabe, T. Komatsu, Mizushima J. Sugano, T. Satoh, Y. Shirai, Y. Takahashi, K. Nakagawa, K. Okumura, T. Nagase, N. Nomura, H. Kikuchi, Y. Masuho, R. Yamashita, K. Nakai, T. Yada, Y. Nakamura, O. Ohara, T. Isogai, S. Sugano posted to 0500 20 20040203 21-22 analysis and biology chromosomes comparative complementary computational dna frames govt human humans messenger non-us open pair reading research rna sequence study support y by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as
	EST comparison indicates 38\% of human mRNAs contain possible alternative splice forms [My Copy] FEBS Lett, Vol. 474, No. 1. (May 2000), pp. 83-86. by D. Brett, J. Hanke, G. Lehmann, et al.S. Haase, S. Delbruck, S. Krueger, J. Reich, P. Bork posted to 1915 20000718 alternative comparative databases deletion exons factual gene humans messengerchemistry proteinsgenetics rna software splicing study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:44 as
	Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping [My Copy] Trends Genet, Vol. 21, No. 8. (Aug 2005), pp. 466-475. by T. E. Royce, J. S. Rozowsky, P. Bertone, et al.M. Samanta, V. Stolc, S. Weissman, M. Snyder, M. Gerstein posted to 0900 20050915 algorithms analysismethodsstatistics array base biology comparative computational data dnagenetics extramural genetic govt humans molecular nih numerical oligonucleotide phs probes research sequence study support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as
	Identification of protein coding regions in genomic DNA [My Copy] J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as
	Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila [My Copy] Genome Res, Vol. 14, No. 2. (Feb 2004), pp. 273-279. by D. L. Halligan, Eyre A. Walker, P. Andolfatto, P. D. Keightley posted to 0500 20040318 alignmentmethodsstatistics animals carlo comparative conserved data dna drosophila drosophilagenetics evolution frequencygenetics gene intergenicgenetics intronsgenetics melanogastergenetics method models molecular monte numerical sequence sequencegenetics statistical study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:30 as
	Interpolated Markov models for eukaryotic gene finding [My Copy] Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31. by S. L. Salzberg, M. Pertea, A. L. Delcher, M. J. Gardner, H. Tettelin posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as
	Finding genes in DNA with a Hidden Markov Model [My Copy] J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141. by J. Henderson, S. Salzberg, K. H. Fasman posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as
	Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals [My Copy] Nature, Vol. 434, No. 7031. (Mar 2005), pp. 338-345. by X. Xie, J. Lu, E. J. Kulbokas, et al.T. R. Golub, V. Mootha, Lindblad K. Toh, E. S. Lander, M. Kellis posted to 0900 20050331 3 alignment animals base comparative conserved data dogs expression gene geneticsgenetics govt humans mammalsgenetics mice micrornasgeneticsmetabolism molecular organ phs profiling promoter rats regions regionsgenetics research sequence sequencegenetics specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:20 as
	SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model [My Copy] Genome Res, Vol. 13, No. 3. (Mar 2003), pp. 496-502. by M. Alexandersson, S. Cawley, L. Pachter posted to 0500 20030412 alignmentmethodsstatistics animals biologymethodsstatistics chains comparative computational conserved data design dna dnagenetics falciparumgenetics genes govt humans markov mice numerical phs plasmodium protozoangenetics research sequence sequencegenetics software species specificity structural structuralgenetics study support us vivaxgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:19 as
	Comparative gene prediction in human and mouse [My Copy] Genome Res, Vol. 13, No. 1. (Jan 2003), pp. 108-117. by G. Parra, P. Agarwal, J. F. Abril, T. Wiehe, J. W. Fickett, R. Guigo posted to 0400 20030318 22genetics acid animals biologymethods chromosomes comparative computational databases forecastingmethods genes genetic genome govt human humans mice non-us nucleic of pair predictive reproducibility research results software structuralgenetics study support tests value by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as
	GAZE: a generic framework for the integration of gene-prediction data by dynamic programming [My Copy] Genome Res, Vol. 12, No. 9. (Sep 2002), pp. 1418-1427. by K. L. Howe, T. Chothia, R. Durbin posted to 0400 20021031 acid algorithms alignment and animals biologymethodsstatistics caenorhabditis comparative computational data databases elegansgenetics factual forecastingmethods genes genetic genome govt helminthgenetics homology information internet models non-us nucleic numerical probability research retrievalstatistics rna sequence sites software storage structural study support tagged trans-splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:15 as
	Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions [My Copy] Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582. by C. Wei, P. Lamesch, M. Arumugam, et al.J. Rosenberg, P. Hu, M. Vidal, M. R. Brent posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	Integrating genomic homology into gene structure prediction [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S140-S148. by I. Korf, P. Flicek, D. Duan, M. R. Brent posted to 1001 20020228 acid algorithms alignmentstatistics and animals base biology comparative computational conserved data dnagenetics evolution genome govt homology human humans mice models molecular non-phs non-us nucleic numerical phs research sensitivity sequence specificity statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:11 as
	Eval: a software package for analysis of genome annotations [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (Oct 2003) by E. Keibler, M. R. Brent posted to 0500 20040724 biologystandardsstatistics comparative computational computer data genome govt graphicsstandardsstatistics non-phs numerical phs research softwareclassification study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:02 as
	EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (Jun 2003) by T. S. Larsen, A. Krogh posted to non-us numerical 20031206 and bacillus bacterial bacterialgenetics binding biologymethodsstatistics chains coli coligenetics comparative computational data escherichia framesgenetics genes genetic genome govt helicobacter markov models mycobacterium predictive proteinschemistrygenetics pylorigenetics reading research ribosomeschemistrygenetics sensitivity sitesgenetics specificity statistical structural study subtilisgenetics support tests tuberculosisgenetics value 0500 of open by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:59 as
	The Ensembl automatic gene annotation system [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 942-950. by V. Curwen, E. Eyras, T. D. Andrews, et al.L. Clarke, E. Mongin, S. M. Searle, M. Clamp posted to 0500 biologymethods computational helminth helminthgenetics helminthphysiology mice structural support tandem tests 20040818 acid dnagenetics dosage human proteinsgenetics pseudogenesgenetics sequence tags untranslated us value animals anophelesgenetics caenorhabditisgenetics comparative genome homology insect insectphysiology non-us predictive rats regionsgenetics repeat sequencesgenetics amino dna gene govt of phs software study alignmentmethods automation expressed genes humans research structuralphysiology by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:49 as
	ESTGenes: alternative splicing from ESTs in Ensembl [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 976-987. by E. Eyras, M. Caccamo, V. Curwen, M. Clamp posted to alternative comparative computational rats research animals expressed genetic insect support us caenorhabditis culicidaegenetics elegansgenetics humans mice results structural 0500 20040818 biology caenorhabditisgenetics dna genes govt helminthgenetics non-us phs predictive splicinggenetics value helminth of reproducibility sequence software study tags tests transcription zebrafishgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:38 as
	Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences [My Copy] Bioinformatics, Vol. 15, No. 11. (Nov 1999), pp. 887-899. by N. Pavy, S. Rombauts, P. Dehais, et al.C. Mathe, D. V. Ramana, P. Leroy, P. Rouze posted to alternative contig dnamethods exonsgenetics sequence splicinggenetics study 20000608 computational evaluation reproducibility software studies support comparative mappingmethods 0900 arabidopsisgenetics genetic govt of protein research results validation analysis biologymethods databases factual genome models non-us plant by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:26 as
	Comparative ab initio prediction of gene structures using pair HMMs [My Copy] Bioinformatics, Vol. 18, No. 10. (Oct 2002), pp. 1309-1318. by I. M. Meyer, R. Durbin posted to databases software specificity alignmentmethods chains mice sequence 0500 algorithms comparative exonsgenetics expression genetic models regulation analysis animals markov proteomicsmethods research study 20030506 acid and dnamethods gene govt humans non-us nucleic of reproducibility results sensitivity support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:59 as
	Feature selection for splice site prediction: a new method using EDA-based feature ranking [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (May 2004) by Y. Saeys, S. Degroeve, D. Aeyels, P. Rouze, Y. Van de Peer posted to 0500 20040826 adenosinemetabolism algorithms arabidopsisgenetics base biologymethodsstatistics chromosomes comparative compositiongenetics computational data databases genetic guaninemetabolism numerical of plantclassificationgenetics plantgenetics predictive rna sitesgenetics software softwarestatistics splice study tests validation value by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:54 as
	Selection of representative protein data sets [My Copy] Protein Sci, Vol. 1, No. 3. (Mar 1992), pp. 409-417. by U. Hobohm, M. Scharf, R. Schneider, C. Sander posted to 0001 19920301 algorithms animals comparative conformation databases diffraction factual human magnetic protein proteinschemistry resonance spectroscopy study x-ray by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:53 as
	Genie--gene finding in Drosophila melanogaster [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 529-538. by M. G. Reese, D. Kulp, H. Tammana, D. Haussler posted to 0900 20000617 analysis animals biologymethods chains comparative computational databases dnamethods drosophila expressed factual genes genetic geneticsgenetics govt insectgenetics markov melanogastergenetics models non-phs phs promoter regions sequence software structural study support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:52 as
	Prediction of complete gene structures in human genomic DNA [My Copy] J Mol Biol, Vol. 268, No. 1. (Apr 1997), pp. 78-94. by C. Burge, S. Karlin posted to 0001 19970425 analysis animals chains comparative data dna exons genes genetic genetics genome govt human introns markov models molecular non-phs phs probability promoter proteinsgenetics regions rna sequence software splicing study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as
	GeneMark.hmm: new solutions for gene finding [My Copy] Nucleic Acids Res, Vol. 26, No. 4. (Feb 1998), pp. 1107-1115. by A. V. Lukashin, M. Borodovsky posted to 0001 19980321 algorithms bacterial bacterialgenetics base chains coligenetics comparative databases dna escherichia evaluation factual genes genetic genome govt markov models phs sequence software studies study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as
	Evaluation of gene-finding programs on mammalian sequences [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 817-832. by S. Rogic, A. K. Mackworth, F. B. Ouellette posted to 1001 20010629 analysis animals base comparative composition cytosineanalysis dnamethods exonsgenetics functions genes genetic govt guanineanalysis human likelihood models non-us phylogeny sequence software species specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:49 as
	PyEvolve: a toolkit for statistical modelling of molecular evolution [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (Jan 2004) by A. Butterfield, V. Vedagiri, E. Lang, et al.C. Lawrence, M. J. Wakefield, A. Isaev, G. A. Huttley posted to 1000 20040621 animals benchmarkingstatistics comparative data design evolution functions genetic gorilla gorillagenetics govt human likelihood mice models molecular mutagenesisgenetics non-us numerical pan rats software softwarestatistics study support troglodytesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:45 as
	Comparative analyses of multi-species sequences from targeted genomic regions [My Copy] Nature, Vol. 424, No. 6950. (Aug 2003), pp. 788-793. by J. W. Thomas, J. W. Touchman, R. W. Blakesley, et al.G. G. Bouffard, Beckstrom S. M. Sternberg, E. H. Margulies, M. Blanchette, A. C. Siepel, P. J. Thomas, J. C. Mcdowell, B. Maskeri, N. F. Hansen, M. S. Schwartz, R. J. Weber, W. J. Kent, D. Karolchik, T. C. Bruen, R. Bevan, D. J. Cutler, S. Schwartz, L. Elnitski, J. R. Idol, A. B. Prasad, Lee S. Q. Lin, V. V. Maduro, T. J. Summers, M. E. Portnoy, N. L. Dietrich, N. Akhter, K. Ayele, B. Benjamin, K. Cariaga, C. P. Brinkley, S. Y. Brooks, S. Granite, X. Guan, J. Gupta, P. Haghighi, S. L. Ho, M. C. Huang, E. Karlins, P. L. Laric, R. Legaspi, M. J. Lim, Q. L. Maduro, C. A. Masiello, S. D. Mastrian, J. C. Mccloskey, R. Pearson, S. Stantripop, E. E. Tiongson, J. T. Tran, C. Tsurgeon, J. L. Vogt, M. A. Walker, K. D. Wetherby, L. S. Wiggins, A. C. Young, L. H. Zhang, K. Osoegawa, B. Zhu, B. Zhao, C. L. Shu, P. J. De Jong, C. E. Lawrence, A. F. Smit, A. Chakravarti, D. Haussler, P. Green, W. Miller, E. D. Green posted to 0500 20030822 7genetics acid alignment animals chromosomes comparative conductance conserved cystic dna elementsgenetics evolution fibrosis genome genomics govt homology human mammalsgenetics molecular mutagenesisgenetics non-us nucleic pair phs phylogeny regulatorgenetics sequence sequencegenetics species specificity study support transmembrane transposable us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:44 as
	Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae [My Copy] Nucleic Acids Res, Vol. 30, No. 5. (Mar 2002), pp. 1233-1239. by C. T. Webb, S. A. Shabalina, A. Y. Ogurtsov, A. S. Kondrashov posted to 1001 20020312 acid analysis animals base caenorhabditis caenorhabditisgenetics comparative data dna elegansgenetics gc govt helminthanalysis homology intergenic molecular nucleic phs phylogeny regions rich sequence species specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:43 as
	Two methods for improving performance of an HMM and their application for gene finding [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 5 (1997), pp. 179-186. by A. Krogh posted to 0001 19971010 algorithms base chains comparative data databases dnagenetics evaluation factual functions genes genetic govt human likelihood markov models molecular non-us sequence studies study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:40 as
	Using database matches with for HMMGene for automated gene detection in Drosophila [My Copy] Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 523-528. by A. Krogh posted to 0900 20000617 acid alcohol analysis and animals biologystatistics chains comparative computational computer-assisted data databases dehydrogenasegenetics drosophila factual genes govt homology insectgenetics markov melanogasterenzymologygenetics non-us nucleic numerical sensitivity sequence software specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:36 as
	Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions. [My Copy] Mol Phylogenet Evol, Vol. 25, No. 2. (Nov 2002), pp. 341-60. by Peter Goldblatt, Vincent Savolainen, Obie Porteous, et al.Ivan Sostaric, Martyn Powell, Gail Reeves, John C. Manning, Timothy G. Barraclough, Mark W. Chase posted to 414315 acid allocation analysis angiosperms animals bacterial banks basilicum bayes biodiversity biological birds calibration carboxylase chain classification codon comparative cooperation data databases demography diterpenes dna ecosystem energy environment european evolution factors financial flavonoids fossils functions fungal genes genetic genetics genome geography govt hybridization insects intergenic international interpretation introns iridaceae lamiaceae likelihood linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plants plastids pollen polymerase proteins random rays reaction regression reproducibility research results ribosomal ribulose-bisphosphate sequence solar spacer specimen states statistical study support temperature theorem time tobacco transpiration ultraviolet union united us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Resolution of a supertree/supermatrix paradox. [My Copy] Syst Biol, Vol. 51, No. 4. (Aug 2002), pp. 652-64. by John Gatesy, Conrad Matthee, Rob Desalle, Cheryl Hayashi posted to 14530139 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 342-55. by John Gatesy, Richard H. Baker, Cheryl Hayashi posted to 15205059 alligators and animals classification comparative crocodiles data design interpretation meta-analysis phylogeny research statistical study bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	Hidden likelihood support in genomic data: can forty-five wrongs make a right? [My Copy] Syst Biol, Vol. 54, No. 3. (Jun 2005), pp. 483-92. by John Gatesy, Richard H. Baker posted to 16012113 animals artiodactyla biology classification comparative computational data dolphins evolution extramural female functions fungal genetic genome govt interpretation likelihood male models nih non-phs non-us phs phylogeny research saccharomyces species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as along with 2 groups biodiversity_conservation GrassBase
	The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. [My Copy] Mol Phylogenet Evol, Vol. 17, No. 3. (Dec 2000), pp. 388-400. by R. C. Evans, L. A. Alice, C. S. Campbell, E. A. Kellogg, T. A. Dickinson posted to 11133193 alignment analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny synthase theorem trait us variance variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Performance of flip supertree construction with a heuristic algorithm. [My Copy] Syst Biol, Vol. 53, No. 2. (Apr 2004), pp. 299-308. by Oliver Eulenstein, Duhong Chen, Gordon J. Burleigh, David F. Baca, Michael J. Sanderson posted to 15205054 algorithms alligators and animals classification comparative computer crocodiles data design govt interpretation meta-analysis non-phs phylogeny research simulation statistical study support us bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as along with 2 groups biodiversity_conservation GrassBase
	Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees. [My Copy] Syst Biol, Vol. 52, No. 6. (Dec 2003), pp. 839-48. by Olaf posted to 14668120 algorithms alignment alligators analysis and angiosperms animals array biodiversity calibration carnivora classification cluster comparative computer crocodiles data design dna evolution factors fossils genetic genetics govt graphics interface interpretation meta-analysis models molecular mutational non-phs non-us oligonucleotide pedigree phylogeny population re research search sequence simulation software statistical study support theoretical time us user-computer variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as along with 2 groups biodiversity_conservation GrassBase

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