Group: Bioinformatics - with tag us [100 articles] Export

Recent papers posted by members of the Bioinformatics group with tag us

	Gene targeting in plants: fingers on the move. [My Copy] Trends Plant Sci, Vol. 11, No. 4. (2006), pp. 159-61. by S. Kumar, G. C. Allen, W. F. Thompson posted to genome-chromatin zinc us targetingmethods support research repair recombination plantsgenetics plant non-us non-phs govt genome genetic gene fingersphysiology endodeoxyribonucleaseschemistrymetabolism dna disassembly chromatin assembly and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:43 as along with 1 group ProkaryoteInterestGroup
	Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements. [My Copy] Mol Cell Biol, Vol. 25, No. 7. (2005), pp. 2698-707. by A. Dhasarathy, M. P. Kladde posted to genome-chromatin us transcription trans-activatorsmetabolism time support sites saccharomyces research regulation regions proteinsmetabolism proteinsgeneticsmetabolism protein promoter phs phosphatespharmacology nuclear non-us kinasesmetabolism immunoprecipitation histone govt geneticsgenetics gene fungal factorsmetabolism factors expression effectsenzymologygenetics dna-binding disassembly chromatingeneticsmetabolism chromatin cerevisiaedrug cerevisiae binding assembly and acetyltransferases by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:38 as along with 1 group ProkaryoteInterestGroup
	Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. [My Copy] Genes Dev, Vol. 19, No. 14. (2005), pp. 1656-61. by B. Chai, J. Huang, B. R. Cairns, B. C. Laurent posted to genome-chromatin us triphosphatemetabolism transcription temperature support saccharomyces research repair recombination proteinsgeneticsmetabolism phs nih mutation kinetics govt genetic genes fungal factorsgeneticsmetabolism extramural dna-binding dna disassembly chromatin cerevisiaegeneticsmetabolism cerevisiae assembly and adenosine by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:33 as along with 1 group ProkaryoteInterestGroup
	Role of transposable elements in heterochromatin and epigenetic control. [My Copy] Nature, Vol. 430, No. 6998. (2004), pp. 471-6. by Z. Lippman, A. V. Gendrel, M. Black, et al.M. W. Vaughn, N. Dedhia, W. R. Mccombie, K. Lavine, V. Mittal, B. May, K. D. Kasschau, J. C. Carrington, R. W. Doerge, V. Colot, R. Martienssen posted to sequencesgenetics sequence rna research repeat regulation proteinsgeneticsmetabolism proteinsgenetics plantgenetics plant phs oligonucleotide non-us non-phs methylation interferinggeneticsmetabolism imprinting homeodomain heterochromatingenetics govt genomic geneticgenetics gene factorsgeneticsmetabolism expression epigenesis elementsgenetics dna-binding dna cytosine-5--methyltransferasemetabolism cluster chromosomes array arabidopsisgenetics arabidopsis analysis genome-chromatin us transposable transcription tandem support small by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:31 as along with 1 group ProkaryoteInterestGroup
	Transition nuclear proteins are required for normal chromatin condensation and functional sperm development. [My Copy] Genesis, Vol. 38, No. 4. (2004), pp. 200-13. by M. Zhao, C. R. Shirley, S. Hayashi, et al.L. Marcon, B. Mohapatra, R. Suganuma, R. R. Behringer, G. Boissonneault, R. Yanagimachi, M. L. Meistrich posted to genome fluorescence disassembly developmentmetabolismpathology chromosomal chromatingeneticsmetabolism chromatin assembly animals and agingphysiology genome-chromatin us support spermatozoacytologygrowth spermatogenesis research proteins protaminesmetabolism phs non-us non-histonedeficiencygeneticsmetabolism mutationgenetics microscopy mice malegeneticspathology male knockout infertility histonesmetabolism govt by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:29 as along with 1 group ProkaryoteInterestGroup
	Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila. [My Copy] Methods Mol Biol, Vol. 287 (2004), pp. 151-68. by M. D. Garfinkel, V. E. Sollars, X. Lu, D. M. Ruden posted to genome-chromatin us trait testsmethods techniques support selection research quantitative proteinsantagonists precipitin phs non-us molecular methylation male loci inhibitors hydroxamic hsp90 histonesanalysismetabolism heat-shock govt genetics genetic female epigenesis drosophilagenetics dna disassembly chromatin biologymethods assembly animals and acidspharmacology acetylation by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:26 as along with 1 group ProkaryoteInterestGroup
	FGF2-induced chromatin remodeling regulates CNTF-mediated gene expression and astrocyte differentiation. [My Copy] Nat Neurosci, Vol. 7, No. 3. (2004), pp. 229-35. by M. R. Song, A. Ghosh posted to genome-chromatin us transductiondrug transcription trans-activatorsdrug support stem stat1 signal research regulation regions rats proteinsdrug proteindrug promoter phs non-us neurotrophic methylationdrug lysinemetabolism histonesdrug growth govt glial geneticsdrug gene fibroblast fibrillary fetus factorsdrug factormetabolismpharmacology factor expression effectsmetabolism effectsgeneticsmetabolism effectsgenetics effects dna-binding disassemblydrug differentiationdrug developmentaldrug cultured cortexcytologyembryologymetabolism ciliary chromatin cerebral cellscytologydrug cells cell astrocytescytologydrug assembly animals and acidic 2metabolismpharmacology by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:24 as along with 1 group ProkaryoteInterestGroup
	ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin. [My Copy] J Cell Biochem, Vol. 91, No. 6. (2004), pp. 1087-98. by S. Sif posted to non-us neoplasmsmetabolism humans govt geneticphysiology gene expression drosophila dnametabolism divisionphysiology disassemblyphysiology chromatin cerevisiae cell assembly animals and adenosine genome-chromatin us triphosphatemetabolism transcription support saccharomyces research regulation proteinsmetabolism phs nucleosomesmetabolism nuclear by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:23 as along with 1 group ProkaryoteInterestGroup
	TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. [My Copy] Genes Dev, Vol. 19, No. 8. (2005), pp. 955-64. by N. Bachman, M. E. Gelbart, T. Tsukiyama, J. D. Boeke posted to genome-chromatin us transfergenetics transcription tfiiibgenetics support subunitsgenetics study specificity species saccharomyces rna retroelementsgenetics research recombination reaction proteinsgenetics protein primers polymerase phs nucleosomesgeneticsmetabolism nih immunoprecipitation govt geneticgenetics factorsgenetics factor extramural dna disassemblygenetics comparative chromatin chain cerevisiaegenetics cerevisiae assembly and adenosinetriphosphatasegenetics by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:22 as along with 1 group ProkaryoteInterestGroup
	Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. [My Copy] Curr Biol, Vol. 16, No. 5. (2006), pp. 486-92. by P. E. Jullien, A. Katz, M. Oliva, N. Ohad, F. Berger posted to genome-chromatin us support silencing seedsgeneticsmetabolism research repressor regulation proteinsmetabolismphysiology proteinsgeneticsmetabolism protein processing post-translational plant non-us non-phs models methylation imprinting immunoprecipitation histonesmetabolism govt genomic genetic gene expression disassembly development chromatin assembly arabidopsisembryologygeneticsgrowth arabidopsis and by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:11 as along with 1 group ProkaryoteInterestGroup
	Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome [My Copy] Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300. by M. Zavolan, S. Kondo, C. Schonbach, et al.J. Adachi, D. A. Hume, Y. Hayashizaki, T. Gaasterland posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as
	Integrative annotation of 21,037 human genes validated by full-length cDNA clones [My Copy] PLoS Biol, Vol. 2, No. 6. (Jun 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Yamaguchi Y. Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, Thierry J. Mieg, Thierry D. Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, Bonaldo F. Mde, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, Fukami K. Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, Mariage R. Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, Piatier D. Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as
	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression [My Copy] Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41. by J. Reboul, P. Vaglio, J. F. Rual, et al.P. Lamesch, M. Martinez, C. M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, T. Moore, Hudson, J. L. Hartley, M. A. Brasch, J. Vandenhaute, S. Boulton, G. A. Endress, S. Jenna, E. Chevet, V. Papasotiropoulos, P. P. Tolias, J. Ptacek, M. Snyder, R. Huang, M. R. Chance, H. Lee, Doucette L. Stamm, D. E. Hill, M. Vidal posted to 0500 20030528 alternative animals caenorhabditis cloning complementarygenetics databases dna elegansgenetics exons expressed expression frames gene genes genetic genome genomics govt helminth helminthgenetics humans introns molecular non-us open phs proteinsgenetics proteome proteomics reading research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Genome-wide detection of tissue-specific alternative splicing in the human transcriptome [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766. by Q. Xu, B. Modrek, C. Lee posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as
	Gene structure prediction and alternative splicing analysis using genomically aligned ESTs [My Copy] Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900. by Z. Kan, E. C. Rouchka, W. R. Gish, D. J. States posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	Frequent alternative splicing of human genes [My Copy] Genome Res, Vol. 9, No. 12. (Dec 1999), pp. 1288-1293. by A. A. Mironov, J. W. Fickett, M. S. Gelfand posted to 0001 19991230 5 alignment alternative base contig data databases exonsgenetics expressed factual govt humans intronsgenetics isoformsgenetics mappingmethods molecular non-phs non-us protein regionsgenetics research sequence sequencegenetics splicing support tags untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as
	The transcriptional activity of human Chromosome 22 [My Copy] Genes Dev, Vol. 17, No. 4. (Feb 2003), pp. 529-540. by J. L. Rinn, G. Euskirchen, P. Bertone, et al.R. Martone, N. M. Luscombe, S. Hartman, P. M. Harrison, F. K. Nelson, P. Miller, M. Gerstein, S. Weissman, M. Snyder posted to 0500 20030328 22 a acid amino analysis animals array chromosomes conserved data databases female genetic govt human humans internet introns mice molecular non-us oligonucleotide pair phs placentaphysiology poly research sequence support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:51 as
	Empirical analysis of transcriptional activity in the Arabidopsis genome [My Copy] Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846. by K. Yamada, J. Lim, J. M. Dale, et al.H. Chen, P. Shinn, C. J. Palm, A. M. Southwick, H. C. Wu, C. Kim, M. Nguyen, P. Pham, R. Cheuk, Karlin G. Newmann, S. X. Liu, B. Lam, H. Sakano, T. Wu, G. Yu, M. Miranda, H. L. Quach, M. Tripp, C. H. Chang, J. M. Lee, M. Toriumi, M. M. Chan, C. C. Tang, C. S. Onodera, J. M. Deng, K. Akiyama, Y. Ansari, T. Arakawa, J. Banh, F. Banno, L. Bowser, S. Brooks, P. Carninci, Q. Chao, N. Choy, A. Enju, A. D. Goldsmith, M. Gurjal, N. F. Hansen, Y. Hayashizaki, Johnson C. Hopson, V. W. Hsuan, K. Iida, M. Karnes, S. Khan, E. Koesema, J. Ishida, P. X. Jiang, T. Jones, J. Kawai, A. Kamiya, C. Meyers, M. Nakajima, M. Narusaka, M. Seki, T. Sakurai, M. Satou, R. Tamse, M. Vaysberg, E. K. Wallender, C. Wong, Y. Yamamura, S. Yuan, K. Shinozaki, R. W. Davis, A. Theologis, J. R. Ecker posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as
	Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 [My Copy] Genome Res, Vol. 14, No. 3. (Mar 2004), pp. 331-342. by D. Kampa, J. Cheng, P. Kapranov, et al.M. Yamanaka, S. Brubaker, S. Cawley, J. Drenkow, A. Piccolboni, S. Bekiranov, G. Helt, H. Tammana, T. R. Gingeras posted to 0500 20040318 21genetics 22genetics analysismethods array cell cellschemistrymetabolism chromosome chromosomes data dna expression gene genes geneticgenetics govt human humans jurkat line mappingmethods messengergenetics molecular neoplasmgenetics non-us oligonucleotide pair phs probesgenetics profilingmethods research rna rnagenetics sequence structural structuralgenetics support transcription tumor us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:48 as
	Global identification of human transcribed sequences with genome tiling arrays [My Copy] Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246. by P. Bertone, V. Stolc, T. E. Royce, et al.J. S. Rozowsky, A. E. Urban, X. Zhu, J. L. Rinn, W. Tongprasit, M. Samanta, S. Weissman, M. Gerstein, M. Snyder posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as
	Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication [My Copy] Nature, Vol. 437, No. 7055. (Sep 2005), pp. 94-100. by E. V. Linardopoulou, E. M. Williams, Y. Fan, C. Friedman, J. M. Young, B. J. Trask posted to 0900 20050913 acid animals base biology breakagegenetics chromosome chromosomes computational dna duplication extramural factors gene genetic geneticgenetics genome genomics govt homology human humangenetics humans models nih nucleic phs polymorphism primatesgenetics recombination repair research sequence support telomeregenetics time translocation us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:41 as
	Applications of DNA tiling arrays for whole-genome analysis [My Copy] Genomics, Vol. 85, No. 1. (Jan 2005), pp. 1-15. by T. C. Mockler, S. Chan, A. Sundaresan, H. Chen, S. E. Jacobsen, J. R. Ecker posted to 0900 20050623 analysismethodstrends animals array chromatin dna expression extramural gene geneticgenetics genome genotype govt humans immunoprecipitationmethodstrends methylation nih non-phs oligonucleotide phs polymorphism profilingmethodstrends research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:40 as
	Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping [My Copy] Trends Genet, Vol. 21, No. 8. (Aug 2005), pp. 466-475. by T. E. Royce, J. S. Rozowsky, P. Bertone, et al.M. Samanta, V. Stolc, S. Weissman, M. Snyder, M. Gerstein posted to 0900 20050915 algorithms analysismethodsstatistics array base biology comparative computational data dnagenetics extramural genetic govt humans molecular nih numerical oligonucleotide phs probes research sequence study support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as
	The human genome browser at UCSC [My Copy] Genome Res, Vol. 12, No. 6. (Jun 2002), pp. 996-1006. by W. J. Kent, C. W. Sugnet, T. S. Furey, et al.K. M. Roskin, T. H. Pringle, A. M. Zahler, D. Haussler posted to 1001 20020702 acid california database databases expression gene genes genetic genome govt homology human humans management messenger non-phs non-us nucleic phs research rna sequence software structural support systems universitiestrends us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	The UCSC Genome Browser Database [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (Jan 2003), pp. 51-54. by D. Karolchik, R. Baertsch, M. Diekhans, et al.T. S. Furey, A. Hinrichs, Y. T. Lu, K. M. Roskin, M. Schwartz, C. W. Sugnet, D. J. Thomas, R. J. Weber, D. Haussler, W. J. Kent posted to 0400 20030315 and animals california database databases genetic genome genomics govt human humans information management mice non-us phs research retrieval storage support systems us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as
	Ensembl 2005 [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (Jan 2005), pp. D447-D453. by T. Hubbard, D. Andrews, M. Caccamo, et al.G. Cameron, Y. Chen, M. Clamp, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, Fernandez X. M. Suarez, J. Gilbert, M. Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, F. Kokocinsci, D. London, I. Longden, G. Mcvicker, C. Melsopp, P. Meidl, S. Potter, G. Proctor, M. Rae, D. Rios, M. Schuster, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, S. Trevanion, Ureta A. Vidal, J. Vogel, S. White, C. Woodwark, E. Birney posted to 0900 20050416 acid alignment animals base cattle databases dogs genomics govt humans interface internet mice non-us nucleic phs rats research sequence software support us user-computer by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	A decision tree system for finding genes in DNA [My Copy] J Comput Biol, Vol. 5, No. 4. (Win 1998), pp. 667-680. by S. Salzberg, A. L. Delcher, K. H. Fasman, J. Henderson posted to 0001 19990311 algorithms chains decision dnaclassificationgenetics genes govt markov non-phs phs research support techniques trees us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as
	Identification of protein coding regions in genomic DNA [My Copy] J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted to 0001 19950421 base biosynthesis comparative composition computer dnachemistrymetabolism exons genes govt humans introns models non-phs of phs protein proteinsgenetics reproducibility research results sequence simulation software statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:36 as
	Sequence logos: a new way to display consensus sequences [My Copy] Nucleic Acids Res, Vol. 18, No. 20. (Oct 1990), pp. 6097-6100. by T. D. Schneider, R. M. Stephens posted to 0001 19901025 acid amino bacteriophage base binding chromosome coligenetics data deletion dna dna-directed elements escherichia genes genetic globinsgenetics govt humans lambdagenetics molecular non-us phs polymerasesmetabolism research rna sequence sites support t-phagesenzymologygenetics techniques transposable us viral by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:35 as
	RefSeq and LocusLink: NCBI gene-centered resources [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (Jan 2001), pp. 137-140. by K. D. Pruitt, D. R. Maglott posted to 1001 20010303 alignment animals biotechnology chromosome databases factual genes health humans information institutes internet library mapping medicine messengergenetics national of proteinsgenetics rna sequence services states structuralgenetics united us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:33 as
	Interpolated Markov models for eukaryotic gene finding [My Copy] Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31. by S. L. Salzberg, M. Pertea, A. L. Delcher, M. J. Gardner, H. Tettelin posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as
	Finding genes in DNA with a Hidden Markov Model [My Copy] J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141. by J. Henderson, S. Salzberg, K. H. Fasman posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as
	Systematic identification and analysis of exonic splicing silencers [My Copy] Cell, Vol. 119, No. 6. (Dec 2004), pp. 831-845. by Z. Wang, M. E. Rolish, G. Yeo, V. Tung, M. Mawson, C. B. Burge posted to 0900 20050317 a-bgenetics acidgenetics algorithms analysis animals base cells cluster computer cultured data elements exonsgenetics f-hgenetics gene govt group heterogeneous-nuclear humans library molecular non-phs non-us phs regulatory research ribonucleic ribonucleoprotein rna sequence sequences silencer simulation splicinggeneticsphysiology support transcriptionalgenetics us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:25 as
	Identification and analysis of alternative splicing events conserved in human and mouse [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 8. (Feb 2005), pp. 2850-2855. by G. W. Yeo, E. Van Nostrand, D. Holste, T. Poggio, C. B. Burge posted to 0900 20050325 alternative animals base conserved evolution exons expressed govt humans mice non-phs non-us phs research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:24 as
	Predictive identification of exonic splicing enhancers in human genes [My Copy] Science, Vol. 297, No. 5583. (Aug 2002), pp. 1007-1013. by W. G. Fairbrother, R. F. Yeh, P. A. Sharp, C. B. Burge posted to 1001 20020829 acid analysis biology complementary computational consensus databases dna exons genes genome govt human humans hypoxanthine introns mutation non-us nucleic oligonucleotidesgenetics phosphoribosyltransferasegenetics phs point regulatory research rna sequence sequences splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:23 as
	GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (Jul 2003), pp. 3601-3604. by W. H. Majoros, M. Pertea, C. Antonescu, S. L. Salzberg posted to 0500 20030819 analysis arabidopsisgenetics cells chains dnamethods eukaryotic exons genes govt internet introns markov non-phs phs plant research sequence software support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:21 as
	Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals [My Copy] Nature, Vol. 434, No. 7031. (Mar 2005), pp. 338-345. by X. Xie, J. Lu, E. J. Kulbokas, et al.T. R. Golub, V. Mootha, Lindblad K. Toh, E. S. Lander, M. Kellis posted to 0900 20050331 3 alignment animals base comparative conserved data dogs expression gene geneticsgenetics govt humans mammalsgenetics mice micrornasgeneticsmetabolism molecular organ phs profiling promoter rats regions regionsgenetics research sequence sequencegenetics specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:20 as
	SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model [My Copy] Genome Res, Vol. 13, No. 3. (Mar 2003), pp. 496-502. by M. Alexandersson, S. Cawley, L. Pachter posted to 0500 20030412 alignmentmethodsstatistics animals biologymethodsstatistics chains comparative computational conserved data design dna dnagenetics falciparumgenetics genes govt humans markov mice numerical phs plasmodium protozoangenetics research sequence sequencegenetics software species specificity structural structuralgenetics study support us vivaxgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:19 as
	Improved microbial gene identification with GLIMMER [My Copy] Nucleic Acids Res, Vol. 27, No. 23. (Dec 1999), pp. 4636-4641. by A. L. Delcher, D. Harmon, S. Kasif, O. White, S. L. Salzberg posted to 0001 19991111 algorithms bacterial chains genes genetic govt markov models non-phs phs research support techniquesstandards us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as
	Microbial gene identification using interpolated Markov models [My Copy] Nucleic Acids Res, Vol. 26, No. 2. (Jan 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted to 0001 19980228 algorithms alignment and bacterialanalysischemistry base chains dna frames govt haemophilus helicobacter influenzaegenetics markov non-phs open phs pylorigenetics reading research sensitivity sequence software specificity support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as
	Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions [My Copy] Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582. by C. Wei, P. Lamesch, M. Arumugam, et al.J. Rosenberg, P. Hu, M. Vidal, M. R. Brent posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as
	Recent advances in gene structure prediction [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (Jun 2004), pp. 264-272. by M. R. Brent, R. Guigo posted to 0900 20041230 acid animals base conformation exons genes genomicstrends govt humans introns models molecular non-phs non-us nucleic phs proteinschemistrygeneticsmetabolism research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:12 as
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	Predicting full-length transcripts [My Copy] Trends Biotechnol, Vol. 20, No. 7. (Jul 2002) by M. R. Brent posted to 0400 20021126 algorithms alignmentmethods analysis and animals conserved databases dnamethodstrends exonsgenetics expression gene genome govt humans information mice non-phs phs profilingmethodstrends protein research retrievalmethods sequence sequencegenetics software storage support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:10 as
	Begin at the beginning: predicting genes with 5' UTRs [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 742-747. by R. H. Brown, S. S. Gross, M. R. Brent posted to dna evaluation exonsgenetics extramural genesgenetics genetic genome genomicsmethods govt human humans initiation models molecular nih phs regionsgenetics research sequence 0900 20050610 5 analysis base biologymethods computational data site studies support transcription untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:09 as
	Identification of protein coding regions in the human genome by quadratic discriminant analysis [My Copy] Proc Natl Acad Sci U S A, Vol. 94, No. 2. (Jan 1997), pp. 565-568. by M. Q. Zhang posted to 0001 19970121 analysis base data dnamethods exons genes genome govt human humans molecular multivariate phs project proteinsgenetics research sequence software structural support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:08 as
	A gene expression map for the euchromatic genome of Drosophila melanogaster [My Copy] Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660. by V. Stolc, Z. Gauhar, C. Mason, et al.G. Halasz, M. F. van Batenburg, S. A. Rifkin, S. Hua, T. Herreman, W. Tongprasit, P. E. Barbano, H. J. Bussemaker, K. P. White posted to 0900 20041216 algorithms analysis animals array biology computational cycle development dna drosophila drosophilagenetics evolution exons expression female gene genes genetic genome govt insect intergenic introns life male melanogastergeneticsgrowth molecular non-phs non-us oligonucleotide phs probes profiling proteinsgeneticsphysiology research rna sequence splicing stages support synteny transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:04 as
	Eval: a software package for analysis of genome annotations [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (Oct 2003) by E. Keibler, M. R. Brent posted to 0500 20040724 biologystandardsstatistics comparative computational computer data genome govt graphicsstandardsstatistics non-phs numerical phs research softwareclassification study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:02 as
	The Ensembl automatic gene annotation system [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 942-950. by V. Curwen, E. Eyras, T. D. Andrews, et al.L. Clarke, E. Mongin, S. M. Searle, M. Clamp posted to 0500 biologymethods computational helminth helminthgenetics helminthphysiology mice structural support tandem tests 20040818 acid dnagenetics dosage human proteinsgenetics pseudogenesgenetics sequence tags untranslated us value animals anophelesgenetics caenorhabditisgenetics comparative genome homology insect insectphysiology non-us predictive rats regionsgenetics repeat sequencesgenetics amino dna gene govt of phs software study alignmentmethods automation expressed genes humans research structuralphysiology by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:49 as
	ESTGenes: alternative splicing from ESTs in Ensembl [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 976-987. by E. Eyras, M. Caccamo, V. Curwen, M. Clamp posted to alternative comparative computational rats research animals expressed genetic insect support us caenorhabditis culicidaegenetics elegansgenetics humans mice results structural 0500 20040818 biology caenorhabditisgenetics dna genes govt helminthgenetics non-us phs predictive splicinggenetics value helminth of reproducibility sequence software study tags tests transcription zebrafishgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:38 as

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